Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS20770 and LU632_RS20775 are separated by 52 nucleotides LU632_RS20775 and LU632_RS20780 are separated by 97 nucleotides LU632_RS20780 and LU632_RS20785 are separated by 9 nucleotides LU632_RS20785 and LU632_RS20790 are separated by 15 nucleotides
LU632_RS20770: LU632_RS20770 - cell wall-binding protein, at 3,965,145 to 3,965,459
_RS20770
LU632_RS20775: LU632_RS20775 - membrane protein, at 3,965,512 to 3,965,937
_RS20775
LU632_RS20780: LU632_RS20780 - hypothetical protein, at 3,966,035 to 3,966,433
_RS20780
LU632_RS20785: LU632_RS20785 - hypothetical protein, at 3,966,443 to 3,968,047
_RS20785
LU632_RS20790: LU632_RS20790 - tyrosine-type recombinase/integrase, at 3,968,063 to 3,969,388
_RS20790
Position (kb) 3966
3967
3968
3969 Strain fitness (log2 ratio) -1
0
1 at 3965.466 kb on - strand at 3965.868 kb on + strand, within LU632_RS20775 at 3966.086 kb on - strand, within LU632_RS20780 at 3966.676 kb on + strand, within LU632_RS20785 at 3967.580 kb on - strand, within LU632_RS20785 at 3967.848 kb on - strand, within LU632_RS20785 at 3968.541 kb on + strand, within LU632_RS20790 at 3968.638 kb on - strand, within LU632_RS20790
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 3,965,466 - +0.1 3,965,868 + LU632_RS20775 0.84 +0.0 3,966,086 - LU632_RS20780 0.13 +0.2 3,966,676 + LU632_RS20785 0.15 +1.4 3,967,580 - LU632_RS20785 0.71 -0.1 3,967,848 - LU632_RS20785 0.88 +0.2 3,968,541 + LU632_RS20790 0.36 -0.3 3,968,638 - LU632_RS20790 0.43 +0.5
Or see this region's nucleotide sequence