Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20360

Experiment: MelonXylem

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MelonXylem
3,872,698	+		LU632_RS20355	0.14	-1.6
3,872,699	-		LU632_RS20355	0.14	+0.7
3,872,740	+		LU632_RS20355	0.18	+0.1
3,872,753	+		LU632_RS20355	0.19	-0.5
3,872,753	+		LU632_RS20355	0.19	+0.7
3,872,782	+		LU632_RS20355	0.22	-0.5
3,872,782	+		LU632_RS20355	0.22	+0.1
3,872,837	+		LU632_RS20355	0.27	-0.3
3,872,838	-		LU632_RS20355	0.27	+0.1
3,872,920	+		LU632_RS20355	0.35	+1.0
3,873,068	-		LU632_RS20355	0.49	-1.3
3,873,068	-		LU632_RS20355	0.49	-1.6
3,873,174	+		LU632_RS20355	0.60	-0.2
3,873,175	-		LU632_RS20355	0.60	+0.4
3,873,274	+		LU632_RS20355	0.69	+1.5
3,873,378	+		LU632_RS20355	0.79	-0.3
3,873,378	+		LU632_RS20355	0.79	-0.3
3,873,379	-		LU632_RS20355	0.80	-0.3
3,873,394	+		LU632_RS20355	0.81	+0.9
3,873,395	-		LU632_RS20355	0.81	+0.2
3,873,534	+				-0.0
3,873,583	+				-0.2
3,873,606	+				-0.3
3,873,606	+				+1.6
3,873,606	+				-0.4
3,873,606	+				+0.0
3,873,607	-				-0.3
3,873,608	+				-0.1
3,873,646	+				+1.6
3,873,647	-				-0.0
3,873,647	-				+2.0
3,873,647	-				+0.1
3,873,647	-				+0.5
3,873,722	-				+0.1
3,873,726	+				+0.8
3,873,727	-				+0.4
3,873,771	+				+0.4
3,873,772	-				+1.0
3,873,781	-				+1.3
3,873,784	+				-0.3
3,873,801	+				-0.2
3,873,802	-				-0.3
3,873,928	-		LU632_RS20360	0.11	+1.0
3,874,065	+		LU632_RS20360	0.17	-0.8
3,874,065	+		LU632_RS20360	0.17	+0.3
3,874,080	+		LU632_RS20360	0.17	+0.3
3,874,081	-		LU632_RS20360	0.18	+0.8
3,874,096	+		LU632_RS20360	0.18	-0.7
3,874,097	-		LU632_RS20360	0.18	+0.1
3,874,105	+		LU632_RS20360	0.19	-0.2
3,874,105	+		LU632_RS20360	0.19	+0.5
3,874,108	-		LU632_RS20360	0.19	-0.0
3,874,191	+		LU632_RS20360	0.22	-0.4
3,874,191	+		LU632_RS20360	0.22	-0.8
3,874,192	-		LU632_RS20360	0.22	-0.4
3,874,195	+		LU632_RS20360	0.22	-0.5
3,874,196	-		LU632_RS20360	0.22	+0.7
3,874,196	-		LU632_RS20360	0.22	-0.1
3,874,196	-		LU632_RS20360	0.22	-0.1
3,874,197	+		LU632_RS20360	0.22	+0.8
3,874,233	+		LU632_RS20360	0.24	-0.6
3,874,233	+		LU632_RS20360	0.24	-0.2
3,874,233	+		LU632_RS20360	0.24	-0.4
3,874,233	+		LU632_RS20360	0.24	+1.0
3,874,234	-		LU632_RS20360	0.24	-0.3
3,874,237	+		LU632_RS20360	0.24	+2.1
3,874,248	-		LU632_RS20360	0.24	-1.2
3,874,282	+		LU632_RS20360	0.26	+1.6
3,874,311	+		LU632_RS20360	0.27	-0.0
3,874,311	+		LU632_RS20360	0.27	-0.3
3,874,312	-		LU632_RS20360	0.27	+0.8
3,874,320	+		LU632_RS20360	0.27	-0.0
3,874,320	+		LU632_RS20360	0.27	+0.9
3,874,447	-		LU632_RS20360	0.33	-0.1
3,874,447	-		LU632_RS20360	0.33	-0.0
3,874,511	-		LU632_RS20360	0.35	+1.0
3,874,512	+		LU632_RS20360	0.36	-0.0
3,874,512	+		LU632_RS20360	0.36	-0.4
3,874,512	+		LU632_RS20360	0.36	+0.7
3,874,512	+		LU632_RS20360	0.36	+0.3
3,874,512	+		LU632_RS20360	0.36	+0.6
3,874,512	+		LU632_RS20360	0.36	+0.6
3,874,513	-		LU632_RS20360	0.36	-0.4
3,874,513	-		LU632_RS20360	0.36	+0.4
3,874,513	-		LU632_RS20360	0.36	+0.4
3,874,513	-		LU632_RS20360	0.36	+0.5
3,874,513	-		LU632_RS20360	0.36	+0.6
3,874,513	-		LU632_RS20360	0.36	-0.7
3,874,513	-		LU632_RS20360	0.36	-0.6
3,874,521	+		LU632_RS20360	0.36	+0.7
3,874,521	+		LU632_RS20360	0.36	+0.1
3,874,521	+		LU632_RS20360	0.36	-0.2
3,874,521	+		LU632_RS20360	0.36	+0.1
3,874,521	+		LU632_RS20360	0.36	-0.6
3,874,541	-		LU632_RS20360	0.37	-0.4
3,874,548	+		LU632_RS20360	0.37	+1.4
3,874,552	+		LU632_RS20360	0.37	-0.5
3,874,553	-		LU632_RS20360	0.37	-0.2
3,874,709	-		LU632_RS20360	0.44	+0.3
3,874,709	-		LU632_RS20360	0.44	+0.4
3,874,765	+		LU632_RS20360	0.46	-0.9
3,874,765	+		LU632_RS20360	0.46	-0.3
3,874,766	-		LU632_RS20360	0.46	-0.3
3,874,766	-		LU632_RS20360	0.46	+0.3
3,874,766	-		LU632_RS20360	0.46	-1.0
3,874,766	-		LU632_RS20360	0.46	+0.7
3,874,766	-		LU632_RS20360	0.46	+0.4
3,874,766	-		LU632_RS20360	0.46	-0.0
3,874,766	-		LU632_RS20360	0.46	+1.3
3,874,767	+		LU632_RS20360	0.46	-0.0
3,874,767	+		LU632_RS20360	0.46	+2.0
3,874,768	-		LU632_RS20360	0.46	-0.0
3,874,768	-		LU632_RS20360	0.46	+0.1
3,874,768	-		LU632_RS20360	0.46	-0.4
3,874,768	-		LU632_RS20360	0.46	-0.0
3,874,924	-		LU632_RS20360	0.53	-0.2
3,874,924	-		LU632_RS20360	0.53	+0.8
3,874,924	-		LU632_RS20360	0.53	+0.6
3,874,928	-		LU632_RS20360	0.53	-0.4
3,874,928	-		LU632_RS20360	0.53	-0.2
3,874,938	+		LU632_RS20360	0.53	-1.0
3,874,938	+		LU632_RS20360	0.53	+0.3
3,874,939	-		LU632_RS20360	0.53	-0.6
3,874,987	+		LU632_RS20360	0.55	-0.2
3,875,013	+		LU632_RS20360	0.56	-0.1
3,875,014	-		LU632_RS20360	0.56	-0.7
3,875,161	+		LU632_RS20360	0.63	-0.3
3,875,162	-		LU632_RS20360	0.63	-0.0
3,875,167	+		LU632_RS20360	0.63	-0.0
3,875,179	-		LU632_RS20360	0.63	+0.4
3,875,182	-		LU632_RS20360	0.63	+0.3
3,875,290	+		LU632_RS20360	0.68	-0.1
3,875,293	+		LU632_RS20360	0.68	+2.0
3,875,421	+		LU632_RS20360	0.73	+0.0
3,875,422	-		LU632_RS20360	0.74	-0.0
3,875,446	-		LU632_RS20360	0.75	-0.1
3,875,544	+		LU632_RS20360	0.79	+0.1
3,875,544	+		LU632_RS20360	0.79	-0.7
3,875,544	+		LU632_RS20360	0.79	-0.3
3,875,544	+		LU632_RS20360	0.79	-0.2
3,875,544	+		LU632_RS20360	0.79	+0.7
3,875,545	-		LU632_RS20360	0.79	+1.6
3,875,545	-		LU632_RS20360	0.79	+0.6
3,875,545	-		LU632_RS20360	0.79	+0.3
3,875,545	-		LU632_RS20360	0.79	-0.2
3,875,545	-		LU632_RS20360	0.79	-0.2
3,875,550	+		LU632_RS20360	0.79	-0.0
3,875,551	-		LU632_RS20360	0.79	+0.5
3,875,551	-		LU632_RS20360	0.79	-0.4
3,875,551	-		LU632_RS20360	0.79	+0.5
3,875,562	+		LU632_RS20360	0.79	+0.2
3,875,563	-		LU632_RS20360	0.79	+1.1
3,875,584	+		LU632_RS20360	0.80	-1.5
3,875,585	-		LU632_RS20360	0.80	-0.9
3,875,585	-		LU632_RS20360	0.80	+0.8
3,875,585	-		LU632_RS20360	0.80	-0.6
3,875,607	+		LU632_RS20360	0.81	-0.5
3,875,608	-		LU632_RS20360	0.81	+0.1
3,875,608	-		LU632_RS20360	0.81	+0.3
3,875,645	+		LU632_RS20360	0.83	-0.6
3,875,646	-		LU632_RS20360	0.83	-0.5
3,875,646	-		LU632_RS20360	0.83	-2.6
3,875,683	+		LU632_RS20360	0.84	+0.1
3,875,686	+		LU632_RS20360	0.85	-0.3
3,875,687	-		LU632_RS20360	0.85	+0.4
3,875,687	-		LU632_RS20360	0.85	-0.2
3,875,688	+		LU632_RS20360	0.85	-0.1
3,875,698	-		LU632_RS20360	0.85	+0.4
3,875,926	+				+0.4
3,875,956	+				+0.8
3,875,956	+				-0.2
3,875,956	+				-0.2
3,875,956	+				-0.3
3,875,957	-				-1.0
3,875,957	-				+0.7
3,876,009	-				-0.1
3,876,058	+				+0.3
3,876,062	-				+0.4
3,876,062	-				+1.6
3,876,078	+				+0.1
3,876,078	+				+0.3
3,876,079	-				-0.2
3,876,079	-				+0.1
3,876,092	+				+0.1
3,876,092	+				+0.4
3,876,092	+				+0.5
3,876,093	-				+0.3
3,876,093	-				-0.3
3,876,112	-				-0.9
3,876,149	+				+0.2
3,876,150	-				+0.3
3,876,150	-				-0.2
3,876,151	+				-0.3
3,876,261	+				+1.0
3,876,261	+				+0.1
3,876,308	+				+0.0
3,876,308	+				-0.4
3,876,308	+				+0.3
3,876,309	-				-0.2
3,876,309	-				-0.2
3,876,357	+		LU632_RS20365	0.16	+0.2
3,876,357	+		LU632_RS20365	0.16	+0.5
3,876,358	-		LU632_RS20365	0.16	-0.1
3,876,541	+		LU632_RS20365	0.81	-0.1
3,876,545	+		LU632_RS20365	0.83	-0.6
3,876,546	-		LU632_RS20365	0.83	-1.0
3,876,626	-				-0.0
3,876,847	-		LU632_RS20370	0.22	-0.2
3,876,946	+		LU632_RS20370	0.46	+0.7
3,876,947	-		LU632_RS20370	0.47	+0.5
3,876,947	-		LU632_RS20370	0.47	+0.1
3,876,958	-		LU632_RS20370	0.49	+0.6