Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07700 and LU632_RS07705 are separated by 2 nucleotides LU632_RS07705 and LU632_RS07710 are separated by 17 nucleotides LU632_RS07710 and LU632_RS07715 are separated by 76 nucleotides LU632_RS07715 and LU632_RS07720 are separated by 2 nucleotides LU632_RS07720 and LU632_RS07725 are separated by 3 nucleotides
LU632_RS07700: LU632_RS07700 - AAA family ATPase, at 1,441,002 to 1,442,168
_RS07700
LU632_RS07705: LU632_RS07705 - hypothetical protein, at 1,442,171 to 1,442,443
_RS07705
LU632_RS07710: LU632_RS07710 - DUF3164 family protein, at 1,442,461 to 1,443,072
_RS07710
LU632_RS07715: LU632_RS07715 - hypothetical protein, at 1,443,149 to 1,443,550
_RS07715
LU632_RS07720: LU632_RS07720 - hypothetical protein, at 1,443,553 to 1,443,741
_RS07720
LU632_RS07725: LU632_RS07725 - DUF2786 domain-containing protein, at 1,443,745 to 1,444,437
_RS07725
Position (kb)
1442
1443
1444 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1441.543 kb on - strand, within LU632_RS07700 at 1441.614 kb on - strand, within LU632_RS07700 at 1442.069 kb on - strand at 1442.069 kb on - strand at 1442.069 kb on - strand at 1442.069 kb on - strand at 1442.224 kb on - strand, within LU632_RS07705 at 1442.346 kb on - strand, within LU632_RS07705 at 1442.351 kb on - strand, within LU632_RS07705 at 1442.352 kb on - strand, within LU632_RS07705 at 1442.434 kb on - strand at 1442.438 kb on - strand at 1442.486 kb on - strand at 1442.536 kb on + strand, within LU632_RS07710 at 1442.638 kb on + strand, within LU632_RS07710 at 1442.649 kb on - strand, within LU632_RS07710 at 1442.669 kb on - strand, within LU632_RS07710 at 1442.736 kb on + strand, within LU632_RS07710 at 1443.002 kb on - strand, within LU632_RS07710 at 1443.002 kb on - strand, within LU632_RS07710 at 1443.004 kb on - strand, within LU632_RS07710 at 1443.057 kb on + strand at 1443.058 kb on - strand at 1443.060 kb on - strand at 1443.060 kb on - strand at 1443.060 kb on - strand at 1443.060 kb on - strand at 1443.077 kb on - strand at 1443.148 kb on + strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.232 kb on + strand, within LU632_RS07715 at 1443.252 kb on + strand, within LU632_RS07715 at 1443.253 kb on - strand, within LU632_RS07715 at 1443.284 kb on + strand, within LU632_RS07715 at 1443.285 kb on - strand, within LU632_RS07715 at 1443.285 kb on - strand, within LU632_RS07715 at 1443.340 kb on + strand, within LU632_RS07715 at 1443.481 kb on - strand, within LU632_RS07715 at 1443.535 kb on + strand at 1443.536 kb on - strand at 1443.565 kb on - strand at 1443.630 kb on - strand, within LU632_RS07720 at 1443.633 kb on + strand, within LU632_RS07720 at 1443.634 kb on - strand, within LU632_RS07720 at 1443.707 kb on - strand, within LU632_RS07720 at 1443.722 kb on + strand, within LU632_RS07720 at 1443.722 kb on + strand, within LU632_RS07720 at 1443.723 kb on - strand at 1443.904 kb on - strand, within LU632_RS07725 at 1443.958 kb on + strand, within LU632_RS07725 at 1443.959 kb on - strand, within LU632_RS07725 at 1443.982 kb on - strand, within LU632_RS07725 at 1444.003 kb on - strand, within LU632_RS07725 at 1444.011 kb on + strand, within LU632_RS07725 at 1444.011 kb on + strand, within LU632_RS07725 at 1444.012 kb on - strand, within LU632_RS07725 at 1444.045 kb on + strand, within LU632_RS07725 at 1444.054 kb on - strand, within LU632_RS07725
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,441,543 - LU632_RS07700 0.46 -0.0 1,441,614 - LU632_RS07700 0.52 -1.1 1,442,069 - +1.9 1,442,069 - -0.2 1,442,069 - -0.8 1,442,069 - +0.3 1,442,224 - LU632_RS07705 0.19 -0.5 1,442,346 - LU632_RS07705 0.64 +0.6 1,442,351 - LU632_RS07705 0.66 +0.7 1,442,352 - LU632_RS07705 0.66 -0.1 1,442,434 - -0.8 1,442,438 - +0.7 1,442,486 - +0.6 1,442,536 + LU632_RS07710 0.12 -2.1 1,442,638 + LU632_RS07710 0.29 -0.8 1,442,649 - LU632_RS07710 0.31 -0.0 1,442,669 - LU632_RS07710 0.34 -0.6 1,442,736 + LU632_RS07710 0.45 +0.2 1,443,002 - LU632_RS07710 0.88 -0.1 1,443,002 - LU632_RS07710 0.88 +0.0 1,443,004 - LU632_RS07710 0.89 -0.3 1,443,057 + -0.1 1,443,058 - -0.0 1,443,060 - +1.3 1,443,060 - -0.3 1,443,060 - -0.2 1,443,060 - -0.5 1,443,077 - -0.4 1,443,148 + -0.1 1,443,149 - -0.2 1,443,149 - -0.2 1,443,149 - -0.3 1,443,149 - -0.1 1,443,149 - -0.1 1,443,149 - -0.0 1,443,232 + LU632_RS07715 0.21 -0.8 1,443,252 + LU632_RS07715 0.26 -0.7 1,443,253 - LU632_RS07715 0.26 -0.8 1,443,284 + LU632_RS07715 0.34 -0.6 1,443,285 - LU632_RS07715 0.34 +0.1 1,443,285 - LU632_RS07715 0.34 -0.4 1,443,340 + LU632_RS07715 0.48 -1.3 1,443,481 - LU632_RS07715 0.83 +0.1 1,443,535 + -2.8 1,443,536 - -0.4 1,443,565 - +0.4 1,443,630 - LU632_RS07720 0.41 +0.8 1,443,633 + LU632_RS07720 0.42 -1.7 1,443,634 - LU632_RS07720 0.43 +0.8 1,443,707 - LU632_RS07720 0.81 +0.2 1,443,722 + LU632_RS07720 0.89 +0.3 1,443,722 + LU632_RS07720 0.89 -2.3 1,443,723 - -0.7 1,443,904 - LU632_RS07725 0.23 -0.5 1,443,958 + LU632_RS07725 0.31 +0.1 1,443,959 - LU632_RS07725 0.31 -0.3 1,443,982 - LU632_RS07725 0.34 +0.2 1,444,003 - LU632_RS07725 0.37 -0.6 1,444,011 + LU632_RS07725 0.38 -0.2 1,444,011 + LU632_RS07725 0.38 -0.2 1,444,012 - LU632_RS07725 0.39 -2.0 1,444,045 + LU632_RS07725 0.43 +0.2 1,444,054 - LU632_RS07725 0.45 +0.9
Or see this region's nucleotide sequence