Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt garL and garR are separated by 22 nucleotides garR and LU632_RS06335 are separated by 70 nucleotides LU632_RS06335 and barA are separated by 42 nucleotides
LU632_RS06325: garL - 2-dehydro-3-deoxyglucarate aldolase, at 1,212,443 to 1,213,213
garL
LU632_RS06330: garR - 2-hydroxy-3-oxopropionate reductase, at 1,213,236 to 1,214,120
garR
LU632_RS06335: LU632_RS06335 - glycerate kinase, at 1,214,191 to 1,215,336
_RS06335
LU632_RS06340: barA - two-component sensor histidine kinase BarA, at 1,215,379 to 1,218,106
barA
Position (kb) 1214
1215
1216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1213.191 kb on + strand at 1213.415 kb on + strand, within garR at 1213.415 kb on + strand, within garR at 1213.497 kb on - strand, within garR at 1213.506 kb on - strand, within garR at 1213.512 kb on - strand, within garR at 1213.674 kb on + strand, within garR at 1213.734 kb on - strand, within garR at 1213.776 kb on - strand, within garR at 1213.911 kb on - strand, within garR at 1213.911 kb on - strand, within garR at 1213.944 kb on - strand, within garR at 1213.946 kb on + strand, within garR at 1213.947 kb on - strand, within garR at 1214.188 kb on + strand at 1214.188 kb on + strand at 1214.189 kb on - strand at 1214.189 kb on - strand at 1214.189 kb on - strand at 1214.190 kb on + strand at 1214.191 kb on - strand at 1214.191 kb on - strand at 1214.191 kb on - strand at 1214.218 kb on + strand at 1214.219 kb on - strand at 1214.221 kb on - strand at 1214.420 kb on - strand, within LU632_RS06335 at 1214.450 kb on - strand, within LU632_RS06335 at 1214.547 kb on + strand, within LU632_RS06335 at 1214.648 kb on + strand, within LU632_RS06335 at 1214.697 kb on - strand, within LU632_RS06335 at 1214.697 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1215.122 kb on + strand, within LU632_RS06335 at 1215.127 kb on - strand, within LU632_RS06335 at 1215.134 kb on - strand, within LU632_RS06335 at 1215.139 kb on - strand, within LU632_RS06335 at 1215.153 kb on + strand, within LU632_RS06335 at 1215.153 kb on + strand, within LU632_RS06335 at 1215.154 kb on - strand, within LU632_RS06335 at 1215.294 kb on + strand at 1215.334 kb on + strand at 1215.335 kb on - strand at 1216.035 kb on + strand, within barA at 1216.036 kb on - strand, within barA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,213,191 + +0.1 1,213,415 + garR LU632_RS06330 0.20 -0.6 1,213,415 + garR LU632_RS06330 0.20 -1.1 1,213,497 - garR LU632_RS06330 0.29 -0.7 1,213,506 - garR LU632_RS06330 0.31 -0.9 1,213,512 - garR LU632_RS06330 0.31 -0.3 1,213,674 + garR LU632_RS06330 0.49 +0.2 1,213,734 - garR LU632_RS06330 0.56 +1.9 1,213,776 - garR LU632_RS06330 0.61 -0.9 1,213,911 - garR LU632_RS06330 0.76 -0.7 1,213,911 - garR LU632_RS06330 0.76 +0.6 1,213,944 - garR LU632_RS06330 0.80 -1.0 1,213,946 + garR LU632_RS06330 0.80 -0.4 1,213,947 - garR LU632_RS06330 0.80 -0.9 1,214,188 + +0.1 1,214,188 + -0.9 1,214,189 - +0.3 1,214,189 - -1.3 1,214,189 - -1.4 1,214,190 + +0.9 1,214,191 - -0.3 1,214,191 - -1.0 1,214,191 - -1.9 1,214,218 + -0.7 1,214,219 - -0.3 1,214,221 - -1.7 1,214,420 - LU632_RS06335 0.20 -2.4 1,214,450 - LU632_RS06335 0.23 -1.2 1,214,547 + LU632_RS06335 0.31 -0.5 1,214,648 + LU632_RS06335 0.40 -2.9 1,214,697 - LU632_RS06335 0.44 -0.5 1,214,697 - LU632_RS06335 0.44 -0.7 1,214,913 - LU632_RS06335 0.63 -2.2 1,214,913 - LU632_RS06335 0.63 -1.4 1,214,913 - LU632_RS06335 0.63 -0.7 1,214,913 - LU632_RS06335 0.63 -1.8 1,214,913 - LU632_RS06335 0.63 -1.8 1,215,122 + LU632_RS06335 0.81 -2.8 1,215,127 - LU632_RS06335 0.82 -1.8 1,215,134 - LU632_RS06335 0.82 -0.9 1,215,139 - LU632_RS06335 0.83 -1.6 1,215,153 + LU632_RS06335 0.84 -3.1 1,215,153 + LU632_RS06335 0.84 -0.7 1,215,154 - LU632_RS06335 0.84 -2.1 1,215,294 + -1.1 1,215,334 + -0.2 1,215,335 - +3.2 1,216,035 + barA LU632_RS06340 0.24 -0.1 1,216,036 - barA LU632_RS06340 0.24 +0.3
Or see this region's nucleotide sequence