Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04725 and LU632_RS04730 are separated by 126 nucleotides LU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides LU632_RS04735 and LU632_RS04740 are separated by 69 nucleotides LU632_RS04740 and LU632_RS04745 are separated by 52 nucleotides
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020
_RS04730
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
LU632_RS04740: LU632_RS04740 - DNA topoisomerase IV subunit B, at 932,268 to 932,570
_RS04740
LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792
_RS04745
Position (kb) 930
931
932
933 Strain fitness (log2 ratio) -1
0
1
2 at 929.395 kb on + strand at 929.413 kb on + strand at 929.469 kb on + strand at 929.470 kb on - strand at 929.470 kb on - strand at 929.518 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.631 kb on - strand, within LU632_RS04730 at 929.631 kb on - strand, within LU632_RS04730 at 929.727 kb on - strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.783 kb on + strand, within LU632_RS04730 at 929.892 kb on - strand, within LU632_RS04730 at 929.904 kb on - strand, within LU632_RS04730 at 930.014 kb on + strand at 930.014 kb on + strand at 930.019 kb on - strand at 930.173 kb on + strand at 930.173 kb on + strand at 930.449 kb on + strand, within LU632_RS04735 at 930.471 kb on - strand, within LU632_RS04735 at 930.539 kb on + strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.679 kb on - strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.812 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735 at 931.029 kb on - strand, within LU632_RS04735 at 931.112 kb on - strand, within LU632_RS04735 at 931.112 kb on - strand, within LU632_RS04735 at 931.172 kb on + strand, within LU632_RS04735 at 931.570 kb on - strand, within LU632_RS04735 at 931.579 kb on - strand, within LU632_RS04735 at 931.622 kb on + strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.707 kb on + strand, within LU632_RS04735 at 931.708 kb on - strand, within LU632_RS04735 at 931.716 kb on - strand, within LU632_RS04735 at 931.743 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.848 kb on - strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.907 kb on - strand, within LU632_RS04735 at 931.995 kb on - strand at 932.312 kb on + strand, within LU632_RS04740 at 932.313 kb on - strand, within LU632_RS04740 at 932.555 kb on - strand at 932.578 kb on - strand at 932.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 929,395 + -0.7 929,413 + -0.5 929,469 + +0.9 929,470 - +0.1 929,470 - +0.2 929,518 + -0.1 929,563 + -0.3 929,563 + +1.3 929,563 + -0.1 929,563 + -0.7 929,631 - LU632_RS04730 0.10 +0.2 929,631 - LU632_RS04730 0.10 +1.2 929,727 - LU632_RS04730 0.32 -1.4 929,780 + LU632_RS04730 0.45 -0.2 929,780 + LU632_RS04730 0.45 +0.4 929,781 - LU632_RS04730 0.45 +0.1 929,781 - LU632_RS04730 0.45 +1.3 929,783 + LU632_RS04730 0.45 -1.1 929,892 - LU632_RS04730 0.70 +0.2 929,904 - LU632_RS04730 0.73 -0.0 930,014 + +0.3 930,014 + -0.6 930,019 - +0.8 930,173 + -0.8 930,173 + +0.3 930,449 + LU632_RS04735 0.14 +0.5 930,471 - LU632_RS04735 0.16 -0.5 930,539 + LU632_RS04735 0.19 +1.6 930,573 - LU632_RS04735 0.21 +0.6 930,573 - LU632_RS04735 0.21 -0.2 930,679 - LU632_RS04735 0.26 -0.4 930,680 + LU632_RS04735 0.26 +0.4 930,680 + LU632_RS04735 0.26 -0.5 930,680 + LU632_RS04735 0.26 +0.0 930,681 - LU632_RS04735 0.26 +0.1 930,681 - LU632_RS04735 0.26 -0.3 930,704 + LU632_RS04735 0.27 +1.7 930,704 + LU632_RS04735 0.27 -0.1 930,704 + LU632_RS04735 0.27 -0.2 930,704 + LU632_RS04735 0.27 -0.8 930,705 - LU632_RS04735 0.27 +1.9 930,705 - LU632_RS04735 0.27 +1.6 930,812 + LU632_RS04735 0.32 +0.2 930,992 + LU632_RS04735 0.41 +0.0 930,992 + LU632_RS04735 0.41 +0.5 931,029 - LU632_RS04735 0.43 -0.4 931,112 - LU632_RS04735 0.47 -0.3 931,112 - LU632_RS04735 0.47 +1.5 931,172 + LU632_RS04735 0.50 +0.7 931,570 - LU632_RS04735 0.69 +0.6 931,579 - LU632_RS04735 0.70 -0.7 931,622 + LU632_RS04735 0.72 -0.1 931,704 - LU632_RS04735 0.76 +0.7 931,704 - LU632_RS04735 0.76 +0.3 931,704 - LU632_RS04735 0.76 +0.0 931,707 + LU632_RS04735 0.76 +0.1 931,708 - LU632_RS04735 0.76 -0.4 931,716 - LU632_RS04735 0.76 +0.4 931,743 + LU632_RS04735 0.78 +0.5 931,775 + LU632_RS04735 0.79 +0.6 931,775 + LU632_RS04735 0.79 +0.2 931,821 + LU632_RS04735 0.82 +0.9 931,821 + LU632_RS04735 0.82 -0.5 931,821 + LU632_RS04735 0.82 -0.5 931,821 + LU632_RS04735 0.82 +2.3 931,821 + LU632_RS04735 0.82 +0.0 931,821 + LU632_RS04735 0.82 -0.0 931,822 - LU632_RS04735 0.82 +1.2 931,822 - LU632_RS04735 0.82 -0.4 931,848 - LU632_RS04735 0.83 -0.2 931,906 + LU632_RS04735 0.86 +0.4 931,906 + LU632_RS04735 0.86 +1.8 931,906 + LU632_RS04735 0.86 +0.9 931,907 - LU632_RS04735 0.86 +0.4 931,995 - +0.0 932,312 + LU632_RS04740 0.15 +0.8 932,313 - LU632_RS04740 0.15 +0.5 932,555 - +0.4 932,578 - -0.3 932,578 - +0.7
Or see this region's nucleotide sequence