Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04360

Experiment: MelonXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04350 and LU632_RS04355 are separated by 446 nucleotidesLU632_RS04355 and LU632_RS04360 overlap by 11 nucleotidesLU632_RS04360 and LU632_RS04365 are separated by 20 nucleotidesLU632_RS04365 and LU632_RS04370 are separated by 608 nucleotides LU632_RS04350: LU632_RS04350 - hypothetical protein, at 861,989 to 862,129 _RS04350 LU632_RS04355: LU632_RS04355 - IS6 family transposase, at 862,576 to 862,905 _RS04355 LU632_RS04360: LU632_RS04360 - VRR-NUC domain-containing protein, at 862,895 to 863,426 _RS04360 LU632_RS04365: LU632_RS04365 - IS5/IS1182 family transposase, at 863,447 to 863,548 _RS04365 LU632_RS04370: LU632_RS04370 - hypothetical protein, at 864,157 to 864,387 _RS04370 Position (kb) 862 863 864Strain fitness (log2 ratio) -2 -1 0 1 2at 861.959 kb on + strandat 861.989 kb on - strandat 862.023 kb on + strand, within LU632_RS04350at 862.023 kb on + strand, within LU632_RS04350at 862.024 kb on - strand, within LU632_RS04350at 862.492 kb on + strandat 862.492 kb on + strandat 862.546 kb on + strandat 862.627 kb on - strand, within LU632_RS04355at 862.628 kb on + strand, within LU632_RS04355at 862.628 kb on + strand, within LU632_RS04355at 862.628 kb on + strand, within LU632_RS04355at 862.629 kb on - strand, within LU632_RS04355at 862.641 kb on + strand, within LU632_RS04355at 862.641 kb on + strand, within LU632_RS04355at 862.641 kb on + strand, within LU632_RS04355at 862.657 kb on + strand, within LU632_RS04355at 862.748 kb on + strand, within LU632_RS04355at 862.816 kb on + strand, within LU632_RS04355at 862.843 kb on + strand, within LU632_RS04355at 862.843 kb on + strand, within LU632_RS04355at 862.844 kb on - strand, within LU632_RS04355at 863.060 kb on + strand, within LU632_RS04360at 863.077 kb on + strand, within LU632_RS04360at 863.098 kb on + strand, within LU632_RS04360at 863.098 kb on + strand, within LU632_RS04360at 863.236 kb on + strand, within LU632_RS04360at 863.236 kb on + strand, within LU632_RS04360at 863.237 kb on - strand, within LU632_RS04360at 863.237 kb on - strand, within LU632_RS04360at 863.237 kb on - strand, within LU632_RS04360at 863.288 kb on + strand, within LU632_RS04360at 863.292 kb on + strand, within LU632_RS04360at 863.423 kb on + strandat 863.424 kb on - strandat 863.480 kb on - strand, within LU632_RS04365at 863.612 kb on + strandat 863.612 kb on + strandat 863.655 kb on - strandat 863.655 kb on - strandat 863.659 kb on - strandat 863.659 kb on - strandat 863.663 kb on + strandat 863.663 kb on + strandat 863.664 kb on - strandat 863.683 kb on - strandat 863.795 kb on + strandat 863.806 kb on + strandat 863.972 kb on - strandat 864.042 kb on - strandat 864.042 kb on - strandat 864.042 kb on - strandat 864.075 kb on + strandat 864.075 kb on + strandat 864.076 kb on - strandat 864.102 kb on - strandat 864.122 kb on + strandat 864.122 kb on + strandat 864.122 kb on + strandat 864.123 kb on - strandat 864.126 kb on + strandat 864.126 kb on + strandat 864.177 kb on + strandat 864.229 kb on - strand, within LU632_RS04370at 864.252 kb on + strand, within LU632_RS04370at 864.272 kb on + strand, within LU632_RS04370at 864.342 kb on - strand, within LU632_RS04370at 864.342 kb on - strand, within LU632_RS04370at 864.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MelonXylem
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861,959 + -0.9
861,989 - -0.9
862,023 + LU632_RS04350 0.24 -0.1
862,023 + LU632_RS04350 0.24 -0.1
862,024 - LU632_RS04350 0.25 +0.1
862,492 + -1.0
862,492 + +0.1
862,546 + -0.1
862,627 - LU632_RS04355 0.15 -0.1
862,628 + LU632_RS04355 0.16 -0.3
862,628 + LU632_RS04355 0.16 -1.9
862,628 + LU632_RS04355 0.16 -0.5
862,629 - LU632_RS04355 0.16 +0.8
862,641 + LU632_RS04355 0.20 -0.0
862,641 + LU632_RS04355 0.20 -1.3
862,641 + LU632_RS04355 0.20 +0.9
862,657 + LU632_RS04355 0.25 +0.0
862,748 + LU632_RS04355 0.52 +0.9
862,816 + LU632_RS04355 0.73 +0.1
862,843 + LU632_RS04355 0.81 +0.4
862,843 + LU632_RS04355 0.81 +0.0
862,844 - LU632_RS04355 0.81 -0.1
863,060 + LU632_RS04360 0.31 +0.7
863,077 + LU632_RS04360 0.34 +0.2
863,098 + LU632_RS04360 0.38 -0.2
863,098 + LU632_RS04360 0.38 -0.4
863,236 + LU632_RS04360 0.64 -1.2
863,236 + LU632_RS04360 0.64 +0.3
863,237 - LU632_RS04360 0.64 +0.2
863,237 - LU632_RS04360 0.64 -0.8
863,237 - LU632_RS04360 0.64 -1.7
863,288 + LU632_RS04360 0.74 -1.1
863,292 + LU632_RS04360 0.75 -0.9
863,423 + -0.7
863,424 - +0.4
863,480 - LU632_RS04365 0.32 +0.0
863,612 + +0.4
863,612 + +0.5
863,655 - -0.2
863,655 - -0.1
863,659 - -0.2
863,659 - +0.3
863,663 + -0.9
863,663 + +0.5
863,664 - -0.9
863,683 - -0.1
863,795 + -0.2
863,806 + +0.7
863,972 - +0.0
864,042 - -0.3
864,042 - +0.9
864,042 - -0.2
864,075 + +2.5
864,075 + -2.3
864,076 - -0.4
864,102 - +0.3
864,122 + +0.1
864,122 + -1.9
864,122 + -0.7
864,123 - -1.0
864,126 + -0.4
864,126 + +0.7
864,177 + -1.0
864,229 - LU632_RS04370 0.31 -0.7
864,252 + LU632_RS04370 0.41 +0.1
864,272 + LU632_RS04370 0.50 +0.3
864,342 - LU632_RS04370 0.80 -0.1
864,342 - LU632_RS04370 0.80 +0.3
864,415 - +0.1

Or see this region's nucleotide sequence