Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiaK and LU632_RS04255 are separated by 13 nucleotides LU632_RS04255 and LU632_RS04260 are separated by 14 nucleotides LU632_RS04260 and LU632_RS04265 overlap by 4 nucleotides
LU632_RS04250: yiaK - 3-dehydro-L-gulonate 2-dehydrogenase, at 845,408 to 846,406
yiaK
LU632_RS04255: LU632_RS04255 - YhcH/YjgK/YiaL family protein, at 846,420 to 846,887
_RS04255
LU632_RS04260: LU632_RS04260 - MFS transporter, at 846,902 to 848,200
_RS04260
LU632_RS04265: LU632_RS04265 - carbohydrate kinase, at 848,197 to 849,681
_RS04265
Position (kb) 846
847
848
849 Strain fitness (log2 ratio) -2
-1
0
1
2 at 845.923 kb on + strand, within yiaK at 846.021 kb on - strand, within yiaK at 846.097 kb on + strand, within yiaK at 846.130 kb on + strand, within yiaK at 846.434 kb on + strand at 846.489 kb on + strand, within LU632_RS04255 at 846.490 kb on - strand, within LU632_RS04255 at 846.636 kb on + strand, within LU632_RS04255 at 846.636 kb on + strand, within LU632_RS04255 at 846.821 kb on + strand, within LU632_RS04255 at 846.821 kb on + strand, within LU632_RS04255 at 846.901 kb on + strand at 846.901 kb on + strand at 846.902 kb on - strand at 846.913 kb on - strand at 846.985 kb on + strand at 846.995 kb on - strand at 847.002 kb on - strand at 847.578 kb on + strand, within LU632_RS04260 at 847.579 kb on - strand, within LU632_RS04260 at 847.646 kb on - strand, within LU632_RS04260 at 847.664 kb on + strand, within LU632_RS04260 at 847.688 kb on - strand, within LU632_RS04260 at 847.767 kb on - strand, within LU632_RS04260 at 847.898 kb on + strand, within LU632_RS04260 at 847.898 kb on + strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.899 kb on - strand, within LU632_RS04260 at 847.914 kb on - strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.063 kb on + strand, within LU632_RS04260 at 848.064 kb on - strand, within LU632_RS04260 at 848.064 kb on - strand, within LU632_RS04260 at 848.065 kb on + strand, within LU632_RS04260 at 848.065 kb on + strand, within LU632_RS04260 at 848.109 kb on + strand at 848.235 kb on + strand at 848.252 kb on - strand at 848.370 kb on - strand, within LU632_RS04265 at 848.678 kb on - strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.724 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.741 kb on + strand, within LU632_RS04265 at 848.743 kb on + strand, within LU632_RS04265 at 848.749 kb on - strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.853 kb on + strand, within LU632_RS04265 at 848.854 kb on - strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.076 kb on + strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.077 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.079 kb on - strand, within LU632_RS04265 at 849.162 kb on - strand, within LU632_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 845,923 + yiaK LU632_RS04250 0.52 -0.6 846,021 - yiaK LU632_RS04250 0.61 -0.7 846,097 + yiaK LU632_RS04250 0.69 -0.6 846,130 + yiaK LU632_RS04250 0.72 -1.3 846,434 + -0.1 846,489 + LU632_RS04255 0.15 +0.5 846,490 - LU632_RS04255 0.15 -0.5 846,636 + LU632_RS04255 0.46 -2.0 846,636 + LU632_RS04255 0.46 -0.3 846,821 + LU632_RS04255 0.86 -0.5 846,821 + LU632_RS04255 0.86 -1.4 846,901 + -0.7 846,901 + -0.2 846,902 - +0.0 846,913 - -0.1 846,985 + -0.1 846,995 - -0.4 847,002 - +0.1 847,578 + LU632_RS04260 0.52 -0.4 847,579 - LU632_RS04260 0.52 +0.1 847,646 - LU632_RS04260 0.57 -1.1 847,664 + LU632_RS04260 0.59 -1.7 847,688 - LU632_RS04260 0.61 -0.7 847,767 - LU632_RS04260 0.67 +1.9 847,898 + LU632_RS04260 0.77 +0.1 847,898 + LU632_RS04260 0.77 +0.0 847,899 - LU632_RS04260 0.77 -0.3 847,899 - LU632_RS04260 0.77 -0.7 847,899 - LU632_RS04260 0.77 +0.3 847,914 - LU632_RS04260 0.78 +0.0 848,063 + LU632_RS04260 0.89 -0.5 848,063 + LU632_RS04260 0.89 +0.0 848,063 + LU632_RS04260 0.89 -0.3 848,063 + LU632_RS04260 0.89 -0.6 848,063 + LU632_RS04260 0.89 +0.2 848,064 - LU632_RS04260 0.89 -0.9 848,064 - LU632_RS04260 0.89 +0.5 848,065 + LU632_RS04260 0.90 -0.5 848,065 + LU632_RS04260 0.90 +0.5 848,109 + -0.1 848,235 + -0.2 848,252 - +0.2 848,370 - LU632_RS04265 0.12 +0.2 848,678 - LU632_RS04265 0.32 -0.1 848,724 + LU632_RS04265 0.35 +0.4 848,724 + LU632_RS04265 0.35 +0.7 848,724 + LU632_RS04265 0.35 +0.0 848,724 + LU632_RS04265 0.35 -0.1 848,741 + LU632_RS04265 0.37 +0.0 848,741 + LU632_RS04265 0.37 +0.7 848,743 + LU632_RS04265 0.37 +0.9 848,749 - LU632_RS04265 0.37 -0.4 848,853 + LU632_RS04265 0.44 -0.6 848,853 + LU632_RS04265 0.44 -0.6 848,854 - LU632_RS04265 0.44 +0.0 849,076 + LU632_RS04265 0.59 +0.1 849,076 + LU632_RS04265 0.59 -2.4 849,076 + LU632_RS04265 0.59 -0.5 849,077 - LU632_RS04265 0.59 +1.9 849,077 - LU632_RS04265 0.59 +0.3 849,077 - LU632_RS04265 0.59 -2.4 849,077 - LU632_RS04265 0.59 -0.9 849,079 - LU632_RS04265 0.59 +0.1 849,079 - LU632_RS04265 0.59 -0.7 849,162 - LU632_RS04265 0.65 -0.2
Or see this region's nucleotide sequence