Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS03905 overlap by 4 nucleotides LU632_RS03905 and LU632_RS03910 are separated by 3 nucleotides
LU632_RS03900: vgrG - type VI secretion system tip protein VgrG, at 781,439 to 783,370
vgrG
LU632_RS03905: LU632_RS03905 - DUF1795 domain-containing protein, at 783,367 to 783,798
_RS03905
LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896
_RS03910
Position (kb) 783
784 Strain fitness (log2 ratio) -1
0
1
2 at 782.387 kb on + strand, within vgrG at 782.388 kb on - strand, within vgrG at 782.408 kb on + strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.474 kb on - strand, within vgrG at 782.474 kb on - strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.594 kb on + strand, within vgrG at 782.595 kb on - strand, within vgrG at 782.740 kb on - strand, within vgrG at 782.747 kb on - strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.790 kb on - strand, within vgrG at 782.954 kb on - strand, within vgrG at 783.093 kb on - strand, within vgrG at 783.271 kb on + strand at 783.347 kb on - strand at 783.520 kb on + strand, within LU632_RS03905 at 783.521 kb on - strand, within LU632_RS03905 at 783.895 kb on + strand at 783.908 kb on + strand at 783.966 kb on - strand at 784.105 kb on - strand at 784.105 kb on - strand at 784.324 kb on + strand, within LU632_RS03910 at 784.337 kb on + strand, within LU632_RS03910 at 784.338 kb on - strand, within LU632_RS03910 at 784.401 kb on + strand, within LU632_RS03910 at 784.404 kb on + strand, within LU632_RS03910 at 784.405 kb on - strand, within LU632_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 782,387 + vgrG LU632_RS03900 0.49 -0.1 782,388 - vgrG LU632_RS03900 0.49 +0.7 782,408 + vgrG LU632_RS03900 0.50 +0.6 782,409 - vgrG LU632_RS03900 0.50 +0.1 782,409 - vgrG LU632_RS03900 0.50 +1.0 782,429 + vgrG LU632_RS03900 0.51 -0.1 782,429 + vgrG LU632_RS03900 0.51 -0.4 782,474 - vgrG LU632_RS03900 0.54 +0.9 782,474 - vgrG LU632_RS03900 0.54 +0.0 782,498 + vgrG LU632_RS03900 0.55 +0.7 782,498 + vgrG LU632_RS03900 0.55 +0.3 782,594 + vgrG LU632_RS03900 0.60 -0.3 782,595 - vgrG LU632_RS03900 0.60 +0.3 782,740 - vgrG LU632_RS03900 0.67 +0.4 782,747 - vgrG LU632_RS03900 0.68 -0.1 782,789 + vgrG LU632_RS03900 0.70 -0.1 782,789 + vgrG LU632_RS03900 0.70 +0.4 782,790 - vgrG LU632_RS03900 0.70 +0.3 782,954 - vgrG LU632_RS03900 0.78 +0.6 783,093 - vgrG LU632_RS03900 0.86 -0.1 783,271 + +0.6 783,347 - -0.7 783,520 + LU632_RS03905 0.35 -0.2 783,521 - LU632_RS03905 0.36 +0.6 783,895 + -0.0 783,908 + -1.1 783,966 - -0.7 784,105 - +0.3 784,105 - +0.0 784,324 + LU632_RS03910 0.13 +0.2 784,337 + LU632_RS03910 0.13 +1.5 784,338 - LU632_RS03910 0.13 +0.4 784,401 + LU632_RS03910 0.15 -0.6 784,404 + LU632_RS03910 0.15 +1.8 784,405 - LU632_RS03910 0.15 +0.5
Or see this region's nucleotide sequence