Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03785 and tssM are separated by 3 nucleotides tssM and tagF are separated by 16 nucleotides tagF and tssA are separated by 15 nucleotides
LU632_RS03785: LU632_RS03785 - DotU family type VI secretion system protein, at 752,625 to 753,860
_RS03785
LU632_RS03790: tssM - type VI secretion system membrane subunit TssM, at 753,864 to 757,487
tssM
LU632_RS03795: tagF - type VI secretion system-associated protein TagF, at 757,504 to 758,217
tagF
LU632_RS03800: tssA - type VI secretion system protein TssA, at 758,233 to 759,252
tssA
Position (kb) 753
754
755
756
757
758 Strain fitness (log2 ratio) -2
-1
0
1
2 at 753.045 kb on + strand, within LU632_RS03785 at 753.045 kb on + strand, within LU632_RS03785 at 753.046 kb on - strand, within LU632_RS03785 at 753.046 kb on - strand, within LU632_RS03785 at 753.130 kb on + strand, within LU632_RS03785 at 753.131 kb on - strand, within LU632_RS03785 at 753.276 kb on + strand, within LU632_RS03785 at 753.277 kb on - strand, within LU632_RS03785 at 753.277 kb on - strand, within LU632_RS03785 at 753.529 kb on - strand, within LU632_RS03785 at 753.642 kb on + strand, within LU632_RS03785 at 753.642 kb on + strand, within LU632_RS03785 at 753.643 kb on - strand, within LU632_RS03785 at 753.793 kb on + strand at 753.800 kb on + strand at 753.872 kb on + strand at 753.923 kb on + strand at 753.938 kb on + strand at 753.939 kb on - strand at 753.939 kb on - strand at 754.000 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.030 kb on - strand at 754.030 kb on - strand at 754.031 kb on + strand at 754.069 kb on - strand at 754.273 kb on - strand, within tssM at 754.287 kb on + strand, within tssM at 754.287 kb on + strand, within tssM at 754.288 kb on - strand, within tssM at 754.288 kb on - strand, within tssM at 754.288 kb on - strand, within tssM at 754.463 kb on + strand, within tssM at 754.464 kb on - strand, within tssM at 754.508 kb on + strand, within tssM at 754.529 kb on + strand, within tssM at 754.529 kb on + strand, within tssM at 754.530 kb on - strand, within tssM at 754.842 kb on + strand, within tssM at 754.843 kb on - strand, within tssM at 755.035 kb on - strand, within tssM at 755.102 kb on - strand, within tssM at 755.177 kb on + strand, within tssM at 755.333 kb on - strand, within tssM at 755.333 kb on - strand, within tssM at 755.367 kb on + strand, within tssM at 755.368 kb on - strand, within tssM at 755.423 kb on - strand, within tssM at 755.510 kb on + strand, within tssM at 755.511 kb on - strand, within tssM at 755.511 kb on - strand, within tssM at 755.598 kb on - strand, within tssM at 755.649 kb on - strand, within tssM at 755.649 kb on - strand, within tssM at 755.674 kb on - strand, within tssM at 755.709 kb on + strand, within tssM at 755.762 kb on + strand, within tssM at 755.833 kb on + strand, within tssM at 755.834 kb on - strand, within tssM at 755.884 kb on - strand, within tssM at 756.088 kb on - strand, within tssM at 756.216 kb on + strand, within tssM at 756.216 kb on + strand, within tssM at 756.216 kb on + strand, within tssM at 756.217 kb on - strand, within tssM at 756.228 kb on + strand, within tssM at 756.264 kb on - strand, within tssM at 756.366 kb on + strand, within tssM at 756.366 kb on + strand, within tssM at 756.367 kb on - strand, within tssM at 756.367 kb on - strand, within tssM at 756.743 kb on + strand, within tssM at 756.743 kb on + strand, within tssM at 756.744 kb on - strand, within tssM at 756.744 kb on - strand, within tssM at 756.809 kb on + strand, within tssM at 757.026 kb on - strand, within tssM at 757.026 kb on - strand, within tssM at 757.296 kb on - strand at 757.296 kb on - strand at 757.877 kb on + strand, within tagF at 757.877 kb on + strand, within tagF at 758.059 kb on + strand, within tagF at 758.059 kb on + strand, within tagF at 758.059 kb on + strand, within tagF at 758.060 kb on - strand, within tagF at 758.060 kb on - strand, within tagF at 758.065 kb on - strand, within tagF at 758.065 kb on - strand, within tagF at 758.065 kb on - strand, within tagF at 758.104 kb on + strand, within tagF at 758.104 kb on + strand, within tagF at 758.104 kb on + strand, within tagF at 758.105 kb on - strand, within tagF at 758.105 kb on - strand, within tagF at 758.107 kb on - strand, within tagF at 758.225 kb on + strand at 758.226 kb on - strand at 758.238 kb on + strand at 758.239 kb on - strand at 758.239 kb on - strand at 758.296 kb on + strand at 758.297 kb on - strand at 758.297 kb on - strand at 758.297 kb on - strand at 758.308 kb on + strand at 758.308 kb on + strand at 758.308 kb on + strand at 758.309 kb on - strand at 758.309 kb on - strand at 758.309 kb on - strand at 758.309 kb on - strand at 758.399 kb on + strand, within tssA at 758.400 kb on - strand, within tssA at 758.400 kb on - strand, within tssA at 758.480 kb on + strand, within tssA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 753,045 + LU632_RS03785 0.34 -0.4 753,045 + LU632_RS03785 0.34 -0.1 753,046 - LU632_RS03785 0.34 +1.4 753,046 - LU632_RS03785 0.34 +1.7 753,130 + LU632_RS03785 0.41 -0.3 753,131 - LU632_RS03785 0.41 +0.8 753,276 + LU632_RS03785 0.53 +0.1 753,277 - LU632_RS03785 0.53 +0.0 753,277 - LU632_RS03785 0.53 +0.1 753,529 - LU632_RS03785 0.73 -0.1 753,642 + LU632_RS03785 0.82 +0.5 753,642 + LU632_RS03785 0.82 +0.1 753,643 - LU632_RS03785 0.82 -1.7 753,793 + -0.2 753,800 + -0.5 753,872 + +0.0 753,923 + -0.5 753,938 + +0.1 753,939 - +0.6 753,939 - -0.2 754,000 + -0.4 754,029 + +0.6 754,029 + -0.2 754,029 + -0.1 754,029 + +1.7 754,029 + -0.3 754,030 - -0.6 754,030 - -1.4 754,031 + +0.4 754,069 - -0.2 754,273 - tssM LU632_RS03790 0.11 -0.6 754,287 + tssM LU632_RS03790 0.12 -0.3 754,287 + tssM LU632_RS03790 0.12 -0.7 754,288 - tssM LU632_RS03790 0.12 +0.0 754,288 - tssM LU632_RS03790 0.12 -0.8 754,288 - tssM LU632_RS03790 0.12 -0.4 754,463 + tssM LU632_RS03790 0.17 -0.2 754,464 - tssM LU632_RS03790 0.17 -0.3 754,508 + tssM LU632_RS03790 0.18 +0.2 754,529 + tssM LU632_RS03790 0.18 +0.2 754,529 + tssM LU632_RS03790 0.18 -0.3 754,530 - tssM LU632_RS03790 0.18 -0.1 754,842 + tssM LU632_RS03790 0.27 -0.9 754,843 - tssM LU632_RS03790 0.27 +0.2 755,035 - tssM LU632_RS03790 0.32 -1.0 755,102 - tssM LU632_RS03790 0.34 -1.6 755,177 + tssM LU632_RS03790 0.36 -0.0 755,333 - tssM LU632_RS03790 0.41 -0.5 755,333 - tssM LU632_RS03790 0.41 -0.6 755,367 + tssM LU632_RS03790 0.41 +0.0 755,368 - tssM LU632_RS03790 0.42 +0.7 755,423 - tssM LU632_RS03790 0.43 -1.2 755,510 + tssM LU632_RS03790 0.45 +0.9 755,511 - tssM LU632_RS03790 0.45 +0.3 755,511 - tssM LU632_RS03790 0.45 +0.1 755,598 - tssM LU632_RS03790 0.48 -0.2 755,649 - tssM LU632_RS03790 0.49 +0.1 755,649 - tssM LU632_RS03790 0.49 +0.6 755,674 - tssM LU632_RS03790 0.50 +0.4 755,709 + tssM LU632_RS03790 0.51 -0.6 755,762 + tssM LU632_RS03790 0.52 -0.5 755,833 + tssM LU632_RS03790 0.54 -0.4 755,834 - tssM LU632_RS03790 0.54 +0.9 755,884 - tssM LU632_RS03790 0.56 +0.0 756,088 - tssM LU632_RS03790 0.61 +0.5 756,216 + tssM LU632_RS03790 0.65 -1.4 756,216 + tssM LU632_RS03790 0.65 -0.7 756,216 + tssM LU632_RS03790 0.65 -0.3 756,217 - tssM LU632_RS03790 0.65 +0.2 756,228 + tssM LU632_RS03790 0.65 -0.5 756,264 - tssM LU632_RS03790 0.66 +0.1 756,366 + tssM LU632_RS03790 0.69 +0.1 756,366 + tssM LU632_RS03790 0.69 -0.4 756,367 - tssM LU632_RS03790 0.69 +0.3 756,367 - tssM LU632_RS03790 0.69 -1.1 756,743 + tssM LU632_RS03790 0.79 -0.3 756,743 + tssM LU632_RS03790 0.79 +0.3 756,744 - tssM LU632_RS03790 0.79 -1.1 756,744 - tssM LU632_RS03790 0.79 -0.3 756,809 + tssM LU632_RS03790 0.81 +0.6 757,026 - tssM LU632_RS03790 0.87 -0.2 757,026 - tssM LU632_RS03790 0.87 -0.1 757,296 - -0.8 757,296 - -0.2 757,877 + tagF LU632_RS03795 0.52 -1.1 757,877 + tagF LU632_RS03795 0.52 -0.4 758,059 + tagF LU632_RS03795 0.78 -0.3 758,059 + tagF LU632_RS03795 0.78 -1.4 758,059 + tagF LU632_RS03795 0.78 -0.3 758,060 - tagF LU632_RS03795 0.78 -0.1 758,060 - tagF LU632_RS03795 0.78 -0.4 758,065 - tagF LU632_RS03795 0.79 +0.1 758,065 - tagF LU632_RS03795 0.79 -0.8 758,065 - tagF LU632_RS03795 0.79 +0.5 758,104 + tagF LU632_RS03795 0.84 -0.8 758,104 + tagF LU632_RS03795 0.84 +0.2 758,104 + tagF LU632_RS03795 0.84 -0.1 758,105 - tagF LU632_RS03795 0.84 -0.5 758,105 - tagF LU632_RS03795 0.84 -0.7 758,107 - tagF LU632_RS03795 0.84 +0.2 758,225 + +0.1 758,226 - +1.2 758,238 + -1.8 758,239 - -0.2 758,239 - -0.1 758,296 + +1.8 758,297 - +0.2 758,297 - -0.4 758,297 - -1.0 758,308 + -0.5 758,308 + -0.4 758,308 + -1.4 758,309 - -0.5 758,309 - +0.4 758,309 - +1.5 758,309 - -0.8 758,399 + tssA LU632_RS03800 0.16 -1.1 758,400 - tssA LU632_RS03800 0.16 +0.3 758,400 - tssA LU632_RS03800 0.16 +0.6 758,480 + tssA LU632_RS03800 0.24 -0.0
Or see this region's nucleotide sequence