Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspE and ppdD overlap by 1 nucleotides ppdD and nadC are separated by 195 nucleotides
LU632_RS03030: gspE - type II secretion system protein GspE, at 619,058 to 620,461
gspE
LU632_RS03035: ppdD - prepilin peptidase-dependent pilin, at 620,461 to 620,913
ppdD
LU632_RS03040: nadC - carboxylating nicotinate-nucleotide diphosphorylase, at 621,109 to 621,996
nadC
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1
2 at 619.504 kb on + strand, within gspE at 619.505 kb on - strand, within gspE at 619.508 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.592 kb on - strand, within gspE at 619.595 kb on - strand, within gspE at 619.661 kb on + strand, within gspE at 619.662 kb on - strand, within gspE at 619.662 kb on - strand, within gspE at 619.714 kb on + strand, within gspE at 619.743 kb on + strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.758 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 620.008 kb on + strand, within gspE at 620.009 kb on - strand, within gspE at 620.102 kb on + strand, within gspE at 620.103 kb on - strand, within gspE at 620.105 kb on - strand, within gspE at 620.105 kb on - strand, within gspE at 620.105 kb on - strand, within gspE at 620.134 kb on + strand, within gspE at 620.159 kb on - strand, within gspE at 620.159 kb on - strand, within gspE at 620.189 kb on + strand, within gspE at 620.218 kb on + strand, within gspE at 620.295 kb on + strand, within gspE at 620.305 kb on + strand, within gspE at 620.314 kb on + strand, within gspE at 620.315 kb on - strand, within gspE at 620.324 kb on - strand at 620.342 kb on + strand at 620.342 kb on + strand at 620.343 kb on - strand at 620.392 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.429 kb on - strand at 620.559 kb on + strand, within ppdD at 620.559 kb on + strand, within ppdD at 620.560 kb on - strand, within ppdD at 620.672 kb on + strand, within ppdD at 620.673 kb on - strand, within ppdD at 620.756 kb on - strand, within ppdD at 620.767 kb on - strand, within ppdD at 620.816 kb on + strand, within ppdD at 620.817 kb on - strand, within ppdD at 620.892 kb on + strand at 620.893 kb on - strand at 620.918 kb on + strand at 620.919 kb on - strand at 621.032 kb on - strand at 621.032 kb on - strand at 621.032 kb on - strand at 621.032 kb on - strand at 621.127 kb on + strand at 621.144 kb on + strand at 621.194 kb on + strand at 621.342 kb on + strand, within nadC at 621.343 kb on - strand, within nadC at 621.455 kb on + strand, within nadC at 621.506 kb on + strand, within nadC at 621.507 kb on - strand, within nadC at 621.541 kb on - strand, within nadC at 621.541 kb on - strand, within nadC at 621.587 kb on + strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.654 kb on + strand, within nadC at 621.817 kb on + strand, within nadC at 621.817 kb on + strand, within nadC at 621.850 kb on + strand, within nadC at 621.850 kb on + strand, within nadC at 621.850 kb on + strand, within nadC at 621.851 kb on - strand, within nadC
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 619,504 + gspE LU632_RS03030 0.32 -0.1 619,505 - gspE LU632_RS03030 0.32 +0.0 619,508 + gspE LU632_RS03030 0.32 -0.2 619,513 + gspE LU632_RS03030 0.32 -0.0 619,513 + gspE LU632_RS03030 0.32 -0.1 619,591 + gspE LU632_RS03030 0.38 -0.5 619,591 + gspE LU632_RS03030 0.38 -0.1 619,592 - gspE LU632_RS03030 0.38 +0.7 619,595 - gspE LU632_RS03030 0.38 -0.2 619,661 + gspE LU632_RS03030 0.43 +0.5 619,662 - gspE LU632_RS03030 0.43 -0.3 619,662 - gspE LU632_RS03030 0.43 -1.8 619,714 + gspE LU632_RS03030 0.47 -0.4 619,743 + gspE LU632_RS03030 0.49 +0.4 619,744 - gspE LU632_RS03030 0.49 +0.3 619,744 - gspE LU632_RS03030 0.49 -0.1 619,744 - gspE LU632_RS03030 0.49 +1.5 619,758 + gspE LU632_RS03030 0.50 -0.2 619,903 + gspE LU632_RS03030 0.60 +0.2 619,903 + gspE LU632_RS03030 0.60 +1.0 620,008 + gspE LU632_RS03030 0.68 +0.1 620,009 - gspE LU632_RS03030 0.68 +0.7 620,102 + gspE LU632_RS03030 0.74 +2.4 620,103 - gspE LU632_RS03030 0.74 +1.2 620,105 - gspE LU632_RS03030 0.75 -0.2 620,105 - gspE LU632_RS03030 0.75 +0.3 620,105 - gspE LU632_RS03030 0.75 +1.0 620,134 + gspE LU632_RS03030 0.77 +0.4 620,159 - gspE LU632_RS03030 0.78 -1.1 620,159 - gspE LU632_RS03030 0.78 -0.4 620,189 + gspE LU632_RS03030 0.81 -1.2 620,218 + gspE LU632_RS03030 0.83 -0.2 620,295 + gspE LU632_RS03030 0.88 +0.3 620,305 + gspE LU632_RS03030 0.89 +0.3 620,314 + gspE LU632_RS03030 0.89 +0.7 620,315 - gspE LU632_RS03030 0.90 +0.4 620,324 - -0.6 620,342 + +0.6 620,342 + -0.1 620,343 - -0.6 620,392 + +0.6 620,428 + -0.6 620,428 + +0.8 620,429 - -0.8 620,559 + ppdD LU632_RS03035 0.22 -0.1 620,559 + ppdD LU632_RS03035 0.22 +0.2 620,560 - ppdD LU632_RS03035 0.22 +0.0 620,672 + ppdD LU632_RS03035 0.47 -0.4 620,673 - ppdD LU632_RS03035 0.47 +0.1 620,756 - ppdD LU632_RS03035 0.65 -1.6 620,767 - ppdD LU632_RS03035 0.68 -1.0 620,816 + ppdD LU632_RS03035 0.78 -1.6 620,817 - ppdD LU632_RS03035 0.79 +0.0 620,892 + +0.4 620,893 - -0.2 620,918 + +0.0 620,919 - +1.0 621,032 - -0.2 621,032 - +0.5 621,032 - -0.5 621,032 - -0.4 621,127 + -1.0 621,144 + +0.2 621,194 + +0.0 621,342 + nadC LU632_RS03040 0.26 -0.4 621,343 - nadC LU632_RS03040 0.26 +0.0 621,455 + nadC LU632_RS03040 0.39 +0.2 621,506 + nadC LU632_RS03040 0.45 -1.0 621,507 - nadC LU632_RS03040 0.45 +0.0 621,541 - nadC LU632_RS03040 0.49 -0.1 621,541 - nadC LU632_RS03040 0.49 +0.3 621,587 + nadC LU632_RS03040 0.54 -0.3 621,588 - nadC LU632_RS03040 0.54 -1.0 621,588 - nadC LU632_RS03040 0.54 +0.0 621,588 - nadC LU632_RS03040 0.54 +0.1 621,588 - nadC LU632_RS03040 0.54 -0.7 621,588 - nadC LU632_RS03040 0.54 +0.3 621,654 + nadC LU632_RS03040 0.61 +0.4 621,817 + nadC LU632_RS03040 0.80 +0.0 621,817 + nadC LU632_RS03040 0.80 +1.2 621,850 + nadC LU632_RS03040 0.83 -1.3 621,850 + nadC LU632_RS03040 0.83 +0.0 621,850 + nadC LU632_RS03040 0.83 -0.1 621,851 - nadC LU632_RS03040 0.84 +1.0
Or see this region's nucleotide sequence