Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02640 and LU632_RS02645 are separated by 79 nucleotides LU632_RS02645 and satP are separated by 408 nucleotides
LU632_RS02640: LU632_RS02640 - MFS transporter, at 527,828 to 529,147
_RS02640
LU632_RS02645: LU632_RS02645 - IS1 family transposase, at 529,227 to 529,924
_RS02645
LU632_RS02650: satP - acetate uptake transporter, at 530,333 to 530,902
satP
Position (kb) 529
530 Strain fitness (log2 ratio) -1
0
1
2 at 528.281 kb on - strand, within LU632_RS02640 at 528.547 kb on + strand, within LU632_RS02640 at 528.568 kb on + strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.699 kb on + strand, within LU632_RS02640 at 528.761 kb on - strand, within LU632_RS02640 at 528.804 kb on - strand, within LU632_RS02640 at 528.891 kb on - strand, within LU632_RS02640 at 528.947 kb on + strand, within LU632_RS02640 at 528.947 kb on + strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.949 kb on + strand, within LU632_RS02640 at 528.960 kb on - strand, within LU632_RS02640 at 528.989 kb on - strand, within LU632_RS02640 at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.038 kb on + strand at 529.039 kb on - strand at 529.076 kb on + strand at 529.076 kb on + strand at 529.076 kb on + strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.093 kb on + strand at 529.158 kb on - strand at 529.202 kb on - strand at 529.202 kb on - strand at 529.943 kb on + strand at 529.956 kb on + strand at 529.999 kb on + strand at 530.065 kb on - strand at 530.081 kb on + strand at 530.117 kb on + strand at 530.267 kb on - strand at 530.270 kb on + strand at 530.271 kb on - strand at 530.294 kb on + strand at 530.294 kb on + strand at 530.302 kb on - strand at 530.334 kb on + strand at 530.373 kb on - strand at 530.428 kb on + strand, within satP at 530.429 kb on - strand, within satP at 530.457 kb on - strand, within satP at 530.462 kb on - strand, within satP at 530.504 kb on + strand, within satP at 530.504 kb on + strand, within satP at 530.656 kb on + strand, within satP at 530.729 kb on - strand, within satP at 530.902 kb on + strand at 530.903 kb on - strand at 530.903 kb on - strand at 530.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 528,281 - LU632_RS02640 0.34 +1.8 528,547 + LU632_RS02640 0.54 +0.3 528,568 + LU632_RS02640 0.56 -0.1 528,680 - LU632_RS02640 0.65 +1.5 528,680 - LU632_RS02640 0.65 +1.2 528,680 - LU632_RS02640 0.65 +0.6 528,680 - LU632_RS02640 0.65 +0.7 528,699 + LU632_RS02640 0.66 +0.5 528,761 - LU632_RS02640 0.71 -0.3 528,804 - LU632_RS02640 0.74 -0.6 528,891 - LU632_RS02640 0.81 +0.7 528,947 + LU632_RS02640 0.85 -0.2 528,947 + LU632_RS02640 0.85 +0.2 528,948 - LU632_RS02640 0.85 +0.2 528,948 - LU632_RS02640 0.85 +1.0 528,948 - LU632_RS02640 0.85 +0.9 528,949 + LU632_RS02640 0.85 -0.3 528,960 - LU632_RS02640 0.86 -1.6 528,989 - LU632_RS02640 0.88 +1.0 529,034 + -0.0 529,034 + +0.4 529,034 + +1.4 529,034 + -0.6 529,034 + -0.9 529,035 - +1.4 529,035 - -0.2 529,035 - +0.1 529,035 - +0.7 529,038 + +0.8 529,039 - +0.8 529,076 + -0.4 529,076 + +0.3 529,076 + -1.1 529,077 - -0.9 529,077 - +0.4 529,077 - +0.3 529,077 - +0.1 529,077 - -1.5 529,077 - +1.0 529,077 - +0.2 529,077 - +0.3 529,093 + +1.8 529,158 - +0.3 529,202 - +0.6 529,202 - +0.6 529,943 + +0.7 529,956 + -0.3 529,999 + -0.3 530,065 - -0.1 530,081 + +0.1 530,117 + +0.8 530,267 - -0.2 530,270 + -0.5 530,271 - -0.3 530,294 + -1.3 530,294 + +0.6 530,302 - -0.5 530,334 + -0.3 530,373 - +1.2 530,428 + satP LU632_RS02650 0.17 +1.2 530,429 - satP LU632_RS02650 0.17 +0.5 530,457 - satP LU632_RS02650 0.22 -1.1 530,462 - satP LU632_RS02650 0.23 -0.6 530,504 + satP LU632_RS02650 0.30 +0.4 530,504 + satP LU632_RS02650 0.30 -0.4 530,656 + satP LU632_RS02650 0.57 +0.2 530,729 - satP LU632_RS02650 0.69 +1.5 530,902 + -0.2 530,903 - -0.3 530,903 - -0.2 530,903 - +0.6
Or see this region's nucleotide sequence