Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt radA and nadR are separated by 105 nucleotides nadR and LU632_RS02560 are separated by 23 nucleotides LU632_RS02560 and ettA are separated by 317 nucleotides
LU632_RS02550: radA - DNA repair protein RadA, at 506,272 to 507,654
radA
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
LU632_RS02560: LU632_RS02560 - zinc-binding dehydrogenase, at 509,010 to 509,411
_RS02560
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1 at 506.784 kb on + strand, within radA at 506.878 kb on + strand, within radA at 506.879 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 507.037 kb on - strand, within radA at 507.037 kb on - strand, within radA at 507.043 kb on - strand, within radA at 507.604 kb on + strand at 507.667 kb on + strand at 507.720 kb on + strand at 507.720 kb on + strand at 507.721 kb on - strand at 507.735 kb on - strand at 507.776 kb on - strand at 507.851 kb on - strand at 507.879 kb on + strand at 508.000 kb on + strand, within nadR at 508.000 kb on - strand, within nadR at 508.003 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.044 kb on + strand, within nadR at 508.152 kb on + strand, within nadR at 508.174 kb on - strand, within nadR at 508.286 kb on - strand, within nadR at 508.287 kb on + strand, within nadR at 508.384 kb on - strand, within nadR at 508.420 kb on + strand, within nadR at 508.506 kb on - strand, within nadR at 508.507 kb on - strand, within nadR at 508.524 kb on + strand, within nadR at 508.525 kb on - strand, within nadR at 508.527 kb on + strand, within nadR at 508.547 kb on + strand, within nadR at 508.559 kb on - strand, within nadR at 508.601 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.843 kb on - strand, within nadR at 508.854 kb on + strand, within nadR at 508.897 kb on - strand at 508.926 kb on + strand at 508.930 kb on + strand at 508.930 kb on + strand at 508.930 kb on - strand at 508.931 kb on - strand at 509.196 kb on + strand, within LU632_RS02560 at 509.197 kb on - strand, within LU632_RS02560 at 509.248 kb on - strand, within LU632_RS02560 at 509.314 kb on - strand, within LU632_RS02560 at 509.363 kb on + strand, within LU632_RS02560 at 509.365 kb on + strand, within LU632_RS02560 at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.485 kb on + strand at 509.533 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.637 kb on + strand at 509.638 kb on - strand at 509.660 kb on + strand at 509.660 kb on + strand at 509.661 kb on - strand at 509.676 kb on - strand at 509.731 kb on - strand at 509.731 kb on - strand at 509.753 kb on - strand at 509.753 kb on - strand at 509.755 kb on + strand at 509.756 kb on - strand at 509.798 kb on - strand at 509.867 kb on - strand at 509.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 506,784 + radA LU632_RS02550 0.37 +0.4 506,878 + radA LU632_RS02550 0.44 -1.3 506,879 - radA LU632_RS02550 0.44 +0.0 506,934 - radA LU632_RS02550 0.48 -0.4 506,934 - radA LU632_RS02550 0.48 -0.6 506,934 - radA LU632_RS02550 0.48 -0.4 506,979 + radA LU632_RS02550 0.51 -0.0 506,979 + radA LU632_RS02550 0.51 +0.2 506,979 + radA LU632_RS02550 0.51 -0.0 507,037 - radA LU632_RS02550 0.55 -0.7 507,037 - radA LU632_RS02550 0.55 +0.1 507,043 - radA LU632_RS02550 0.56 -0.1 507,604 + -0.4 507,667 + +1.0 507,720 + +0.2 507,720 + +0.2 507,721 - +0.3 507,735 - -0.2 507,776 - -1.2 507,851 - -0.2 507,879 + +0.4 508,000 + nadR LU632_RS02555 0.20 -1.0 508,000 - nadR LU632_RS02555 0.20 -0.2 508,003 + nadR LU632_RS02555 0.20 -0.3 508,023 + nadR LU632_RS02555 0.21 -0.6 508,023 + nadR LU632_RS02555 0.21 -0.3 508,044 + nadR LU632_RS02555 0.23 -0.9 508,152 + nadR LU632_RS02555 0.32 -0.2 508,174 - nadR LU632_RS02555 0.34 -0.2 508,286 - nadR LU632_RS02555 0.43 -0.1 508,287 + nadR LU632_RS02555 0.43 -1.0 508,384 - nadR LU632_RS02555 0.51 -0.4 508,420 + nadR LU632_RS02555 0.54 -1.1 508,506 - nadR LU632_RS02555 0.61 -1.6 508,507 - nadR LU632_RS02555 0.61 -0.1 508,524 + nadR LU632_RS02555 0.62 -2.0 508,525 - nadR LU632_RS02555 0.62 -0.3 508,527 + nadR LU632_RS02555 0.63 -2.0 508,547 + nadR LU632_RS02555 0.64 +0.0 508,559 - nadR LU632_RS02555 0.65 -0.5 508,601 - nadR LU632_RS02555 0.69 -1.6 508,681 - nadR LU632_RS02555 0.75 +0.2 508,681 - nadR LU632_RS02555 0.75 +0.3 508,800 + nadR LU632_RS02555 0.85 -0.7 508,800 + nadR LU632_RS02555 0.85 -1.2 508,800 + nadR LU632_RS02555 0.85 +1.7 508,843 - nadR LU632_RS02555 0.88 -2.6 508,854 + nadR LU632_RS02555 0.89 -0.9 508,897 - -0.8 508,926 + -0.6 508,930 + -1.2 508,930 + +0.1 508,930 - -0.4 508,931 - -0.1 509,196 + LU632_RS02560 0.46 +0.0 509,197 - LU632_RS02560 0.47 -1.1 509,248 - LU632_RS02560 0.59 -0.1 509,314 - LU632_RS02560 0.76 +0.0 509,363 + LU632_RS02560 0.88 +0.4 509,365 + LU632_RS02560 0.88 -0.5 509,443 + +0.7 509,443 + -0.3 509,443 + +1.0 509,444 - -0.3 509,485 + -0.1 509,533 + +0.5 509,537 + -0.1 509,537 + -1.5 509,537 + +0.5 509,637 + -0.3 509,638 - +0.5 509,660 + +0.5 509,660 + +0.1 509,661 - -0.2 509,676 - +0.8 509,731 - +0.5 509,731 - +1.2 509,753 - +0.2 509,753 - +0.1 509,755 + +1.6 509,756 - +0.5 509,798 - +0.0 509,867 - -0.8 509,879 - +0.0
Or see this region's nucleotide sequence