Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hflK and hflC are separated by 3 nucleotides hflC and LU632_RS02075 are separated by 481 nucleotides LU632_RS02075 and LU632_RS02080 are separated by 146 nucleotides
LU632_RS02065: hflK - FtsH protease activity modulator HflK, at 405,933 to 407,174
hflK
LU632_RS02070: hflC - protease modulator HflC, at 407,178 to 408,188
hflC
LU632_RS02075: LU632_RS02075 - transposase, at 408,670 to 409,005
_RS02075
LU632_RS02080: LU632_RS02080 - hypothetical protein, at 409,152 to 409,565
_RS02080
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 406.398 kb on + strand, within hflK at 406.423 kb on - strand, within hflK at 406.480 kb on + strand, within hflK at 406.613 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.695 kb on + strand, within hflK at 406.696 kb on - strand, within hflK at 406.782 kb on + strand, within hflK at 406.885 kb on - strand, within hflK at 407.307 kb on - strand, within hflC at 407.317 kb on + strand, within hflC at 407.452 kb on - strand, within hflC at 407.622 kb on - strand, within hflC at 407.847 kb on + strand, within hflC at 408.057 kb on + strand, within hflC at 408.058 kb on - strand, within hflC at 408.065 kb on + strand, within hflC at 408.179 kb on + strand at 408.186 kb on + strand at 408.187 kb on - strand at 408.222 kb on + strand at 408.223 kb on - strand at 408.314 kb on + strand at 408.337 kb on + strand at 408.347 kb on + strand at 408.348 kb on - strand at 408.402 kb on + strand at 408.425 kb on + strand at 408.425 kb on + strand at 408.425 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.557 kb on + strand at 408.557 kb on + strand at 408.558 kb on - strand at 408.581 kb on - strand at 408.600 kb on + strand at 408.659 kb on - strand at 408.705 kb on + strand, within LU632_RS02075 at 408.878 kb on + strand, within LU632_RS02075 at 408.878 kb on + strand, within LU632_RS02075 at 408.956 kb on - strand, within LU632_RS02075 at 409.065 kb on - strand at 409.068 kb on + strand at 409.069 kb on - strand at 409.069 kb on - strand at 409.069 kb on - strand at 409.098 kb on - strand at 409.106 kb on + strand at 409.130 kb on + strand at 409.138 kb on - strand at 409.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 406,398 + hflK LU632_RS02065 0.37 -1.8 406,423 - hflK LU632_RS02065 0.39 +1.1 406,480 + hflK LU632_RS02065 0.44 -3.1 406,613 + hflK LU632_RS02065 0.55 +0.1 406,695 + hflK LU632_RS02065 0.61 -1.3 406,695 + hflK LU632_RS02065 0.61 -0.5 406,696 - hflK LU632_RS02065 0.61 +1.1 406,782 + hflK LU632_RS02065 0.68 -1.1 406,885 - hflK LU632_RS02065 0.77 -0.3 407,307 - hflC LU632_RS02070 0.13 -0.9 407,317 + hflC LU632_RS02070 0.14 -1.5 407,452 - hflC LU632_RS02070 0.27 -1.3 407,622 - hflC LU632_RS02070 0.44 -1.3 407,847 + hflC LU632_RS02070 0.66 -1.7 408,057 + hflC LU632_RS02070 0.87 -0.5 408,058 - hflC LU632_RS02070 0.87 -1.7 408,065 + hflC LU632_RS02070 0.88 -2.3 408,179 + -0.8 408,186 + +0.1 408,187 - -0.3 408,222 + -0.8 408,223 - +0.3 408,314 + -0.1 408,337 + -2.5 408,347 + +0.1 408,348 - +0.1 408,402 + +1.1 408,425 + -0.4 408,425 + +0.1 408,425 - -0.2 408,426 - +0.0 408,426 - +0.1 408,426 - -0.3 408,426 - +0.3 408,426 - -0.5 408,426 - +0.2 408,557 + -0.3 408,557 + +0.1 408,558 - -0.2 408,581 - +0.1 408,600 + +0.9 408,659 - +0.5 408,705 + LU632_RS02075 0.10 +0.0 408,878 + LU632_RS02075 0.62 +1.7 408,878 + LU632_RS02075 0.62 -0.4 408,956 - LU632_RS02075 0.85 +0.8 409,065 - -0.3 409,068 + -0.2 409,069 - -0.5 409,069 - -0.4 409,069 - -0.1 409,098 - -0.5 409,106 + +0.7 409,130 + +0.5 409,138 - -0.5 409,165 - +1.1
Or see this region's nucleotide sequence