Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01130 and lpcA are separated by 213 nucleotides lpcA and LU632_RS01140 are separated by 43 nucleotides LU632_RS01140 and dpaA overlap by 30 nucleotides
LU632_RS01130: LU632_RS01130 - acyl-CoA dehydrogenase family protein, at 240,874 to 241,640
_RS01130
LU632_RS01135: lpcA - D-sedoheptulose 7-phosphate isomerase, at 241,854 to 242,432
lpcA
LU632_RS01140: LU632_RS01140 - class II glutamine amidotransferase, at 242,476 to 243,243
_RS01140
LU632_RS01145: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 243,214 to 243,957
dpaA
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1
2 at 240.989 kb on + strand, within LU632_RS01130 at 241.077 kb on + strand, within LU632_RS01130 at 241.078 kb on - strand, within LU632_RS01130 at 241.185 kb on - strand, within LU632_RS01130 at 241.303 kb on - strand, within LU632_RS01130 at 241.573 kb on - strand at 241.589 kb on - strand at 241.640 kb on + strand at 241.641 kb on - strand at 241.641 kb on - strand at 241.720 kb on + strand at 241.753 kb on - strand at 242.163 kb on + strand, within lpcA at 242.379 kb on - strand at 242.430 kb on + strand at 242.469 kb on + strand at 242.469 kb on + strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.470 kb on - strand at 242.476 kb on - strand at 242.622 kb on + strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.623 kb on - strand, within LU632_RS01140 at 242.719 kb on - strand, within LU632_RS01140 at 242.745 kb on + strand, within LU632_RS01140 at 242.768 kb on + strand, within LU632_RS01140 at 242.769 kb on - strand, within LU632_RS01140 at 242.778 kb on + strand, within LU632_RS01140 at 242.788 kb on + strand, within LU632_RS01140 at 242.788 kb on + strand, within LU632_RS01140 at 242.789 kb on - strand, within LU632_RS01140 at 242.808 kb on - strand, within LU632_RS01140 at 242.808 kb on - strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.994 kb on + strand, within LU632_RS01140 at 242.995 kb on - strand, within LU632_RS01140 at 242.995 kb on - strand, within LU632_RS01140 at 243.022 kb on - strand, within LU632_RS01140 at 243.022 kb on - strand, within LU632_RS01140 at 243.274 kb on - strand at 243.290 kb on - strand, within dpaA at 243.294 kb on - strand, within dpaA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 240,989 + LU632_RS01130 0.15 +1.3 241,077 + LU632_RS01130 0.26 +0.8 241,078 - LU632_RS01130 0.27 -0.4 241,185 - LU632_RS01130 0.41 +0.1 241,303 - LU632_RS01130 0.56 -0.6 241,573 - +0.1 241,589 - -0.3 241,640 + +0.3 241,641 - -0.1 241,641 - -0.5 241,720 + -0.0 241,753 - -1.0 242,163 + lpcA LU632_RS01135 0.53 +1.1 242,379 - -0.9 242,430 + -0.1 242,469 + +1.1 242,469 + -0.2 242,470 - +0.4 242,470 - +0.6 242,470 - +2.1 242,476 - +1.4 242,622 + LU632_RS01140 0.19 +0.4 242,623 - LU632_RS01140 0.19 +1.1 242,623 - LU632_RS01140 0.19 +0.7 242,623 - LU632_RS01140 0.19 +0.5 242,623 - LU632_RS01140 0.19 +2.7 242,719 - LU632_RS01140 0.32 -1.2 242,745 + LU632_RS01140 0.35 +0.6 242,768 + LU632_RS01140 0.38 +1.5 242,769 - LU632_RS01140 0.38 -0.2 242,778 + LU632_RS01140 0.39 +0.1 242,788 + LU632_RS01140 0.41 -0.2 242,788 + LU632_RS01140 0.41 -0.2 242,789 - LU632_RS01140 0.41 -0.2 242,808 - LU632_RS01140 0.43 -0.2 242,808 - LU632_RS01140 0.43 -0.4 242,994 + LU632_RS01140 0.67 +0.9 242,994 + LU632_RS01140 0.67 -0.1 242,994 + LU632_RS01140 0.67 -0.6 242,995 - LU632_RS01140 0.68 +0.2 242,995 - LU632_RS01140 0.68 +0.2 243,022 - LU632_RS01140 0.71 -0.1 243,022 - LU632_RS01140 0.71 +0.0 243,274 - -0.5 243,290 - dpaA LU632_RS01145 0.10 -0.1 243,294 - dpaA LU632_RS01145 0.11 -0.7
Or see this region's nucleotide sequence