Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtnK and LU632_RS01125 are separated by 74 nucleotides LU632_RS01125 and LU632_RS01130 are separated by 130 nucleotides
LU632_RS01120: mtnK - S-methyl-5-thioribose kinase, at 238,847 to 240,032
mtnK
LU632_RS01125: LU632_RS01125 - IS5/IS1182 family transposase, at 240,107 to 240,743
_RS01125
LU632_RS01130: LU632_RS01130 - acyl-CoA dehydrogenase family protein, at 240,874 to 241,640
_RS01130
Position (kb) 240
241 Strain fitness (log2 ratio) -1
0
1 at 239.114 kb on + strand, within mtnK at 239.114 kb on + strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.155 kb on + strand, within mtnK at 239.247 kb on + strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.284 kb on - strand, within mtnK at 239.393 kb on + strand, within mtnK at 239.586 kb on + strand, within mtnK at 239.587 kb on - strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.894 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.984 kb on + strand at 239.985 kb on - strand at 240.084 kb on - strand at 240.084 kb on - strand at 240.119 kb on - strand at 240.841 kb on - strand at 240.841 kb on - strand at 240.989 kb on + strand, within LU632_RS01130 at 241.077 kb on + strand, within LU632_RS01130 at 241.078 kb on - strand, within LU632_RS01130 at 241.185 kb on - strand, within LU632_RS01130 at 241.303 kb on - strand, within LU632_RS01130 at 241.573 kb on - strand at 241.589 kb on - strand at 241.640 kb on + strand at 241.641 kb on - strand at 241.641 kb on - strand at 241.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 239,114 + mtnK LU632_RS01120 0.23 +1.1 239,114 + mtnK LU632_RS01120 0.23 -0.3 239,115 - mtnK LU632_RS01120 0.23 -0.4 239,115 - mtnK LU632_RS01120 0.23 +0.2 239,155 + mtnK LU632_RS01120 0.26 -0.3 239,247 + mtnK LU632_RS01120 0.34 +0.4 239,269 - mtnK LU632_RS01120 0.36 -0.4 239,269 - mtnK LU632_RS01120 0.36 -0.0 239,284 - mtnK LU632_RS01120 0.37 -0.1 239,393 + mtnK LU632_RS01120 0.46 -0.1 239,586 + mtnK LU632_RS01120 0.62 +0.1 239,587 - mtnK LU632_RS01120 0.62 +0.3 239,640 + mtnK LU632_RS01120 0.67 +1.7 239,640 + mtnK LU632_RS01120 0.67 +0.2 239,640 + mtnK LU632_RS01120 0.67 -0.2 239,894 + mtnK LU632_RS01120 0.88 +0.5 239,896 + mtnK LU632_RS01120 0.88 -0.3 239,896 + mtnK LU632_RS01120 0.88 +0.1 239,896 + mtnK LU632_RS01120 0.88 -0.7 239,897 - mtnK LU632_RS01120 0.89 -1.7 239,897 - mtnK LU632_RS01120 0.89 -0.9 239,897 - mtnK LU632_RS01120 0.89 +0.8 239,984 + +0.7 239,985 - -0.5 240,084 - +0.0 240,084 - -0.5 240,119 - -0.1 240,841 - +0.9 240,841 - -0.3 240,989 + LU632_RS01130 0.15 +1.3 241,077 + LU632_RS01130 0.26 +0.8 241,078 - LU632_RS01130 0.27 -0.4 241,185 - LU632_RS01130 0.41 +0.1 241,303 - LU632_RS01130 0.56 -0.6 241,573 - +0.1 241,589 - -0.3 241,640 + +0.3 241,641 - -0.1 241,641 - -0.5 241,720 + -0.0
Or see this region's nucleotide sequence