Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00340

Experiment: MelonXylem

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS00335 and LU632_RS00340 are separated by 50 nucleotidesLU632_RS00340 and LU632_RS00345 are separated by 174 nucleotides LU632_RS00335: LU632_RS00335 - insulinase family protein, at 70,967 to 72,460 _RS00335 LU632_RS00340: LU632_RS00340 - alpha/beta hydrolase, at 72,511 to 73,386 _RS00340 LU632_RS00345: LU632_RS00345 - IS6 family transposase, at 73,561 to 74,240 _RS00345 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 71.591 kb on + strand, within LU632_RS00335at 71.591 kb on + strand, within LU632_RS00335at 71.592 kb on - strand, within LU632_RS00335at 71.604 kb on - strand, within LU632_RS00335at 71.672 kb on - strand, within LU632_RS00335at 71.771 kb on - strand, within LU632_RS00335at 71.771 kb on - strand, within LU632_RS00335at 71.771 kb on - strand, within LU632_RS00335at 71.958 kb on - strand, within LU632_RS00335at 71.958 kb on - strand, within LU632_RS00335at 71.980 kb on - strand, within LU632_RS00335at 71.995 kb on + strand, within LU632_RS00335at 72.019 kb on + strand, within LU632_RS00335at 72.020 kb on - strand, within LU632_RS00335at 72.131 kb on + strand, within LU632_RS00335at 72.131 kb on + strand, within LU632_RS00335at 72.132 kb on - strand, within LU632_RS00335at 72.132 kb on - strand, within LU632_RS00335at 72.309 kb on + strand, within LU632_RS00335at 72.310 kb on - strand, within LU632_RS00335at 72.614 kb on + strand, within LU632_RS00340at 72.649 kb on + strand, within LU632_RS00340at 72.675 kb on + strand, within LU632_RS00340at 72.693 kb on + strand, within LU632_RS00340at 72.694 kb on - strand, within LU632_RS00340at 72.911 kb on + strand, within LU632_RS00340at 72.954 kb on - strand, within LU632_RS00340at 72.979 kb on - strand, within LU632_RS00340at 72.985 kb on - strand, within LU632_RS00340at 73.116 kb on + strand, within LU632_RS00340at 73.170 kb on + strand, within LU632_RS00340at 73.209 kb on + strand, within LU632_RS00340at 73.210 kb on - strand, within LU632_RS00340at 73.210 kb on - strand, within LU632_RS00340at 73.258 kb on + strand, within LU632_RS00340at 73.372 kb on + strandat 73.419 kb on + strandat 73.420 kb on - strandat 73.420 kb on - strandat 73.420 kb on - strandat 73.420 kb on - strandat 73.519 kb on - strandat 73.538 kb on - strandat 73.553 kb on - strandat 73.611 kb on + strandat 74.319 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MelonXylem
remove
71,591 + LU632_RS00335 0.42 -0.9
71,591 + LU632_RS00335 0.42 -0.4
71,592 - LU632_RS00335 0.42 -0.6
71,604 - LU632_RS00335 0.43 -0.5
71,672 - LU632_RS00335 0.47 -0.5
71,771 - LU632_RS00335 0.54 -0.4
71,771 - LU632_RS00335 0.54 -0.2
71,771 - LU632_RS00335 0.54 -0.4
71,958 - LU632_RS00335 0.66 -0.4
71,958 - LU632_RS00335 0.66 -0.6
71,980 - LU632_RS00335 0.68 -0.5
71,995 + LU632_RS00335 0.69 -0.2
72,019 + LU632_RS00335 0.70 -0.5
72,020 - LU632_RS00335 0.70 -0.6
72,131 + LU632_RS00335 0.78 -0.3
72,131 + LU632_RS00335 0.78 -0.1
72,132 - LU632_RS00335 0.78 -0.1
72,132 - LU632_RS00335 0.78 -0.6
72,309 + LU632_RS00335 0.90 -0.8
72,310 - LU632_RS00335 0.90 -0.0
72,614 + LU632_RS00340 0.12 -2.0
72,649 + LU632_RS00340 0.16 +0.0
72,675 + LU632_RS00340 0.19 -0.2
72,693 + LU632_RS00340 0.21 -1.0
72,694 - LU632_RS00340 0.21 -1.7
72,911 + LU632_RS00340 0.46 +0.2
72,954 - LU632_RS00340 0.51 -0.6
72,979 - LU632_RS00340 0.53 -0.5
72,985 - LU632_RS00340 0.54 +0.0
73,116 + LU632_RS00340 0.69 -0.5
73,170 + LU632_RS00340 0.75 +0.4
73,209 + LU632_RS00340 0.80 -0.8
73,210 - LU632_RS00340 0.80 -0.1
73,210 - LU632_RS00340 0.80 -1.3
73,258 + LU632_RS00340 0.85 -0.5
73,372 + -1.3
73,419 + +0.8
73,420 - +0.4
73,420 - +0.3
73,420 - -0.4
73,420 - -0.1
73,519 - +0.1
73,538 - +0.0
73,553 - -0.8
73,611 + +0.1
74,319 - +0.6

Or see this region's nucleotide sequence