Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00290 and LU632_RS00295 are separated by 31 nucleotides LU632_RS00295 and LU632_RS00300 are separated by 218 nucleotides
LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620
_RS00290
LU632_RS00295: LU632_RS00295 - IS1 family transposase, at 59,652 to 60,349
_RS00295
LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599
_RS00300
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.002 kb on - strand, within LU632_RS00290 at 59.131 kb on - strand, within LU632_RS00290 at 59.160 kb on + strand, within LU632_RS00290 at 59.166 kb on - strand, within LU632_RS00290 at 59.250 kb on - strand, within LU632_RS00290 at 59.293 kb on + strand, within LU632_RS00290 at 59.356 kb on - strand, within LU632_RS00290 at 59.540 kb on + strand at 59.540 kb on + strand at 59.563 kb on + strand at 59.570 kb on - strand at 59.582 kb on - strand at 60.380 kb on + strand at 60.381 kb on - strand at 60.383 kb on + strand at 60.383 kb on + strand at 60.384 kb on - strand at 60.387 kb on + strand at 60.405 kb on - strand at 60.428 kb on + strand at 60.428 kb on + strand at 60.428 kb on + strand at 60.432 kb on - strand at 60.432 kb on - strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.499 kb on - strand at 60.519 kb on - strand at 60.735 kb on - strand, within LU632_RS00300 at 60.735 kb on - strand, within LU632_RS00300 at 60.735 kb on - strand, within LU632_RS00300 at 60.748 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.890 kb on - strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.026 kb on - strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.183 kb on + strand, within LU632_RS00300 at 61.184 kb on - strand, within LU632_RS00300 at 61.243 kb on - strand, within LU632_RS00300 at 61.274 kb on + strand, within LU632_RS00300 at 61.275 kb on - strand, within LU632_RS00300 at 61.277 kb on - strand, within LU632_RS00300 at 61.284 kb on + strand, within LU632_RS00300
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 59,002 - LU632_RS00290 0.40 +0.1 59,131 - LU632_RS00290 0.52 +0.1 59,160 + LU632_RS00290 0.55 -0.1 59,166 - LU632_RS00290 0.56 -0.5 59,250 - LU632_RS00290 0.64 +0.1 59,293 + LU632_RS00290 0.68 -1.1 59,356 - LU632_RS00290 0.74 +0.8 59,540 + +0.4 59,540 + -1.2 59,563 + -0.1 59,570 - -0.7 59,582 - +0.4 60,380 + +0.1 60,381 - -2.3 60,383 + +1.1 60,383 + -0.4 60,384 - -0.6 60,387 + -0.0 60,405 - +0.4 60,428 + -0.3 60,428 + +0.3 60,428 + -0.6 60,432 - +0.8 60,432 - -0.5 60,470 - +0.2 60,470 - -1.0 60,499 - +0.1 60,519 - +2.0 60,735 - LU632_RS00300 0.16 +1.1 60,735 - LU632_RS00300 0.16 +0.4 60,735 - LU632_RS00300 0.16 -0.0 60,748 + LU632_RS00300 0.17 -0.2 60,889 + LU632_RS00300 0.31 -0.5 60,889 + LU632_RS00300 0.31 -0.5 60,889 + LU632_RS00300 0.31 -0.1 60,889 + LU632_RS00300 0.31 +1.4 60,889 + LU632_RS00300 0.31 +0.3 60,890 - LU632_RS00300 0.31 -0.0 60,918 + LU632_RS00300 0.34 -0.3 60,918 + LU632_RS00300 0.34 -0.3 61,025 + LU632_RS00300 0.44 -1.2 61,025 + LU632_RS00300 0.44 -0.3 61,025 + LU632_RS00300 0.44 -0.5 61,025 + LU632_RS00300 0.44 -0.6 61,025 + LU632_RS00300 0.44 +0.3 61,026 - LU632_RS00300 0.44 +0.2 61,181 + LU632_RS00300 0.59 -0.9 61,181 + LU632_RS00300 0.59 -0.0 61,181 + LU632_RS00300 0.59 -0.3 61,183 + LU632_RS00300 0.60 +0.5 61,184 - LU632_RS00300 0.60 -0.4 61,243 - LU632_RS00300 0.65 -0.2 61,274 + LU632_RS00300 0.68 -0.5 61,275 - LU632_RS00300 0.69 +1.2 61,277 - LU632_RS00300 0.69 -0.4 61,284 + LU632_RS00300 0.69 -2.5
Or see this region's nucleotide sequence