Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04251 and ECD_04252 are separated by 108 nucleotides ECD_04252 and ECD_04253 are separated by 121 nucleotides
ECD_04251: ECD_04251 - salt-inducible putative ABC transporter periplasmic binding protein, at 4,529,771 to 4,530,376
_04251
ECD_04252: ECD_04252 - uncharacterized protein, at 4,530,485 to 4,530,664
_04252
ECD_04253: ECD_04253 - putative patatin-like family phospholipase, at 4,530,786 to 4,531,859
_04253
Position (kb)
4530
4531 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4529.517 kb on + strand at 4529.616 kb on - strand at 4529.616 kb on - strand at 4529.688 kb on - strand at 4529.708 kb on - strand at 4529.757 kb on - strand at 4529.765 kb on - strand at 4529.765 kb on - strand at 4529.815 kb on - strand at 4529.815 kb on - strand at 4529.849 kb on + strand, within ECD_04251 at 4529.872 kb on + strand, within ECD_04251 at 4529.873 kb on - strand, within ECD_04251 at 4529.903 kb on - strand, within ECD_04251 at 4529.915 kb on - strand, within ECD_04251 at 4530.320 kb on - strand at 4530.334 kb on - strand at 4530.374 kb on + strand at 4530.374 kb on + strand at 4530.374 kb on + strand at 4530.465 kb on - strand at 4530.480 kb on + strand at 4530.481 kb on - strand at 4530.484 kb on + strand at 4530.484 kb on + strand at 4530.485 kb on - strand at 4530.485 kb on - strand at 4530.502 kb on + strand at 4530.502 kb on + strand at 4530.502 kb on + strand at 4530.503 kb on - strand, within ECD_04252 at 4530.503 kb on - strand, within ECD_04252 at 4530.503 kb on - strand, within ECD_04252 at 4530.523 kb on - strand, within ECD_04252 at 4530.620 kb on - strand, within ECD_04252 at 4530.815 kb on + strand at 4530.819 kb on - strand at 4530.859 kb on + strand at 4530.860 kb on - strand at 4530.860 kb on - strand at 4530.954 kb on + strand, within ECD_04253 at 4530.995 kb on + strand, within ECD_04253 at 4531.038 kb on + strand, within ECD_04253 at 4531.189 kb on - strand, within ECD_04253 at 4531.190 kb on + strand, within ECD_04253 at 4531.190 kb on + strand, within ECD_04253 at 4531.190 kb on + strand, within ECD_04253 at 4531.191 kb on - strand, within ECD_04253 at 4531.234 kb on + strand, within ECD_04253 at 4531.322 kb on + strand, within ECD_04253 at 4531.322 kb on + strand, within ECD_04253 at 4531.322 kb on + strand, within ECD_04253 at 4531.323 kb on - strand, within ECD_04253 at 4531.323 kb on - strand, within ECD_04253 at 4531.426 kb on - strand, within ECD_04253 at 4531.426 kb on - strand, within ECD_04253 at 4531.429 kb on - strand, within ECD_04253 at 4531.475 kb on + strand, within ECD_04253 at 4531.597 kb on + strand, within ECD_04253 at 4531.597 kb on + strand, within ECD_04253 at 4531.597 kb on + strand, within ECD_04253 at 4531.598 kb on - strand, within ECD_04253 at 4531.598 kb on - strand, within ECD_04253 at 4531.601 kb on + strand, within ECD_04253 at 4531.601 kb on + strand, within ECD_04253 at 4531.601 kb on + strand, within ECD_04253 at 4531.601 kb on + strand, within ECD_04253 at 4531.602 kb on - strand, within ECD_04253 at 4531.602 kb on - strand, within ECD_04253 at 4531.602 kb on - strand, within ECD_04253 at 4531.604 kb on + strand, within ECD_04253 at 4531.644 kb on + strand, within ECD_04253 at 4531.645 kb on - strand, within ECD_04253 at 4531.646 kb on + strand, within ECD_04253 at 4531.646 kb on + strand, within ECD_04253 at 4531.646 kb on + strand, within ECD_04253
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,529,517 + -0.3 4,529,616 - -0.5 4,529,616 - -1.1 4,529,688 - -0.4 4,529,708 - -0.8 4,529,757 - -1.6 4,529,765 - -0.7 4,529,765 - +0.5 4,529,815 - +0.4 4,529,815 - +0.5 4,529,849 + ECD_04251 0.13 -0.9 4,529,872 + ECD_04251 0.17 -0.1 4,529,873 - ECD_04251 0.17 +0.5 4,529,903 - ECD_04251 0.22 -1.9 4,529,915 - ECD_04251 0.24 -2.4 4,530,320 - -0.5 4,530,334 - -1.2 4,530,374 + +1.3 4,530,374 + +0.3 4,530,374 + -0.5 4,530,465 - +0.6 4,530,480 + -1.5 4,530,481 - -0.7 4,530,484 + +1.2 4,530,484 + +0.2 4,530,485 - -1.4 4,530,485 - -2.5 4,530,502 + -1.4 4,530,502 + -1.4 4,530,502 + -0.8 4,530,503 - ECD_04252 0.10 -0.2 4,530,503 - ECD_04252 0.10 -0.4 4,530,503 - ECD_04252 0.10 -1.4 4,530,523 - ECD_04252 0.21 -2.5 4,530,620 - ECD_04252 0.75 -0.0 4,530,815 + -0.1 4,530,819 - -0.7 4,530,859 + -1.1 4,530,860 - -2.9 4,530,860 - -0.7 4,530,954 + ECD_04253 0.16 -0.3 4,530,995 + ECD_04253 0.19 +0.2 4,531,038 + ECD_04253 0.23 -0.9 4,531,189 - ECD_04253 0.38 -0.4 4,531,190 + ECD_04253 0.38 -1.4 4,531,190 + ECD_04253 0.38 -1.1 4,531,190 + ECD_04253 0.38 +0.3 4,531,191 - ECD_04253 0.38 -0.1 4,531,234 + ECD_04253 0.42 -0.5 4,531,322 + ECD_04253 0.50 +0.6 4,531,322 + ECD_04253 0.50 -0.2 4,531,322 + ECD_04253 0.50 -1.8 4,531,323 - ECD_04253 0.50 -0.7 4,531,323 - ECD_04253 0.50 -0.1 4,531,426 - ECD_04253 0.60 +0.3 4,531,426 - ECD_04253 0.60 -2.8 4,531,429 - ECD_04253 0.60 -0.8 4,531,475 + ECD_04253 0.64 -0.2 4,531,597 + ECD_04253 0.76 -0.2 4,531,597 + ECD_04253 0.76 -0.0 4,531,597 + ECD_04253 0.76 -1.0 4,531,598 - ECD_04253 0.76 -1.4 4,531,598 - ECD_04253 0.76 -0.7 4,531,601 + ECD_04253 0.76 -0.5 4,531,601 + ECD_04253 0.76 -0.0 4,531,601 + ECD_04253 0.76 +0.6 4,531,601 + ECD_04253 0.76 -0.9 4,531,602 - ECD_04253 0.76 -0.7 4,531,602 - ECD_04253 0.76 -0.3 4,531,602 - ECD_04253 0.76 -0.4 4,531,604 + ECD_04253 0.76 +0.0 4,531,644 + ECD_04253 0.80 -1.4 4,531,645 - ECD_04253 0.80 -1.0 4,531,646 + ECD_04253 0.80 +0.3 4,531,646 + ECD_04253 0.80 +0.2 4,531,646 + ECD_04253 0.80 -0.7
Or see this region's nucleotide sequence