Strain Fitness in Escherichia coli BL21 around ECD_04252

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04251 and ECD_04252 are separated by 108 nucleotidesECD_04252 and ECD_04253 are separated by 121 nucleotides ECD_04251: ECD_04251 - salt-inducible putative ABC transporter periplasmic binding protein, at 4,529,771 to 4,530,376 _04251 ECD_04252: ECD_04252 - uncharacterized protein, at 4,530,485 to 4,530,664 _04252 ECD_04253: ECD_04253 - putative patatin-like family phospholipase, at 4,530,786 to 4,531,859 _04253 Position (kb) 4530 4531Strain fitness (log2 ratio) -3 -2 -1 0 1at 4529.517 kb on + strandat 4529.616 kb on - strandat 4529.616 kb on - strandat 4529.688 kb on - strandat 4529.708 kb on - strandat 4529.757 kb on - strandat 4529.765 kb on - strandat 4529.765 kb on - strandat 4529.815 kb on - strandat 4529.815 kb on - strandat 4529.849 kb on + strand, within ECD_04251at 4529.872 kb on + strand, within ECD_04251at 4529.873 kb on - strand, within ECD_04251at 4529.903 kb on - strand, within ECD_04251at 4529.915 kb on - strand, within ECD_04251at 4530.320 kb on - strandat 4530.334 kb on - strandat 4530.374 kb on + strandat 4530.374 kb on + strandat 4530.374 kb on + strandat 4530.465 kb on - strandat 4530.480 kb on + strandat 4530.481 kb on - strandat 4530.484 kb on + strandat 4530.484 kb on + strandat 4530.485 kb on - strandat 4530.485 kb on - strandat 4530.502 kb on + strandat 4530.502 kb on + strandat 4530.502 kb on + strandat 4530.503 kb on - strand, within ECD_04252at 4530.503 kb on - strand, within ECD_04252at 4530.503 kb on - strand, within ECD_04252at 4530.523 kb on - strand, within ECD_04252at 4530.620 kb on - strand, within ECD_04252at 4530.815 kb on + strandat 4530.819 kb on - strandat 4530.859 kb on + strandat 4530.860 kb on - strandat 4530.860 kb on - strandat 4530.954 kb on + strand, within ECD_04253at 4530.995 kb on + strand, within ECD_04253at 4531.038 kb on + strand, within ECD_04253at 4531.189 kb on - strand, within ECD_04253at 4531.190 kb on + strand, within ECD_04253at 4531.190 kb on + strand, within ECD_04253at 4531.190 kb on + strand, within ECD_04253at 4531.191 kb on - strand, within ECD_04253at 4531.234 kb on + strand, within ECD_04253at 4531.322 kb on + strand, within ECD_04253at 4531.322 kb on + strand, within ECD_04253at 4531.322 kb on + strand, within ECD_04253at 4531.323 kb on - strand, within ECD_04253at 4531.323 kb on - strand, within ECD_04253at 4531.426 kb on - strand, within ECD_04253at 4531.426 kb on - strand, within ECD_04253at 4531.429 kb on - strand, within ECD_04253at 4531.475 kb on + strand, within ECD_04253at 4531.597 kb on + strand, within ECD_04253at 4531.597 kb on + strand, within ECD_04253at 4531.597 kb on + strand, within ECD_04253at 4531.598 kb on - strand, within ECD_04253at 4531.598 kb on - strand, within ECD_04253at 4531.601 kb on + strand, within ECD_04253at 4531.601 kb on + strand, within ECD_04253at 4531.601 kb on + strand, within ECD_04253at 4531.601 kb on + strand, within ECD_04253at 4531.602 kb on - strand, within ECD_04253at 4531.602 kb on - strand, within ECD_04253at 4531.602 kb on - strand, within ECD_04253at 4531.604 kb on + strand, within ECD_04253at 4531.644 kb on + strand, within ECD_04253at 4531.645 kb on - strand, within ECD_04253at 4531.646 kb on + strand, within ECD_04253at 4531.646 kb on + strand, within ECD_04253at 4531.646 kb on + strand, within ECD_04253

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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4,529,517 + -0.3
4,529,616 - -0.5
4,529,616 - -1.1
4,529,688 - -0.4
4,529,708 - -0.8
4,529,757 - -1.6
4,529,765 - -0.7
4,529,765 - +0.5
4,529,815 - +0.4
4,529,815 - +0.5
4,529,849 + ECD_04251 0.13 -0.9
4,529,872 + ECD_04251 0.17 -0.1
4,529,873 - ECD_04251 0.17 +0.5
4,529,903 - ECD_04251 0.22 -1.9
4,529,915 - ECD_04251 0.24 -2.4
4,530,320 - -0.5
4,530,334 - -1.2
4,530,374 + +1.3
4,530,374 + +0.3
4,530,374 + -0.5
4,530,465 - +0.6
4,530,480 + -1.5
4,530,481 - -0.7
4,530,484 + +1.2
4,530,484 + +0.2
4,530,485 - -1.4
4,530,485 - -2.5
4,530,502 + -1.4
4,530,502 + -1.4
4,530,502 + -0.8
4,530,503 - ECD_04252 0.10 -0.2
4,530,503 - ECD_04252 0.10 -0.4
4,530,503 - ECD_04252 0.10 -1.4
4,530,523 - ECD_04252 0.21 -2.5
4,530,620 - ECD_04252 0.75 -0.0
4,530,815 + -0.1
4,530,819 - -0.7
4,530,859 + -1.1
4,530,860 - -2.9
4,530,860 - -0.7
4,530,954 + ECD_04253 0.16 -0.3
4,530,995 + ECD_04253 0.19 +0.2
4,531,038 + ECD_04253 0.23 -0.9
4,531,189 - ECD_04253 0.38 -0.4
4,531,190 + ECD_04253 0.38 -1.4
4,531,190 + ECD_04253 0.38 -1.1
4,531,190 + ECD_04253 0.38 +0.3
4,531,191 - ECD_04253 0.38 -0.1
4,531,234 + ECD_04253 0.42 -0.5
4,531,322 + ECD_04253 0.50 +0.6
4,531,322 + ECD_04253 0.50 -0.2
4,531,322 + ECD_04253 0.50 -1.8
4,531,323 - ECD_04253 0.50 -0.7
4,531,323 - ECD_04253 0.50 -0.1
4,531,426 - ECD_04253 0.60 +0.3
4,531,426 - ECD_04253 0.60 -2.8
4,531,429 - ECD_04253 0.60 -0.8
4,531,475 + ECD_04253 0.64 -0.2
4,531,597 + ECD_04253 0.76 -0.2
4,531,597 + ECD_04253 0.76 -0.0
4,531,597 + ECD_04253 0.76 -1.0
4,531,598 - ECD_04253 0.76 -1.4
4,531,598 - ECD_04253 0.76 -0.7
4,531,601 + ECD_04253 0.76 -0.5
4,531,601 + ECD_04253 0.76 -0.0
4,531,601 + ECD_04253 0.76 +0.6
4,531,601 + ECD_04253 0.76 -0.9
4,531,602 - ECD_04253 0.76 -0.7
4,531,602 - ECD_04253 0.76 -0.3
4,531,602 - ECD_04253 0.76 -0.4
4,531,604 + ECD_04253 0.76 +0.0
4,531,644 + ECD_04253 0.80 -1.4
4,531,645 - ECD_04253 0.80 -1.0
4,531,646 + ECD_04253 0.80 +0.3
4,531,646 + ECD_04253 0.80 +0.2
4,531,646 + ECD_04253 0.80 -0.7

Or see this region's nucleotide sequence