Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04199 and ECD_04200 are separated by 249 nucleotides ECD_04200 and ECD_04201 are separated by 12 nucleotides ECD_04201 and ECD_04202 are separated by 67 nucleotides ECD_04202 and ECD_04392 are separated by 64 nucleotides
ECD_04199: ECD_04199 - nucleoside recognition pore and gate family putative inner membrane transporter, at 4,469,276 to 4,469,959
_04199
ECD_04200: ECD_04200 - RNA 2'-phosphotransferase, at 4,470,209 to 4,470,763
_04200
ECD_04201: ECD_04201 - DUF1228 family putative inner membrane MFS superfamily transporter, at 4,470,776 to 4,471,954
_04201
ECD_04202: ECD_04202 - SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase, at 4,472,022 to 4,472,882
_04202
ECD_04392: ECD_04392 - uncharacterized protein, at 4,472,947 to 4,473,204
_04392
Position (kb)
4470
4471
4472 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4469.873 kb on + strand, within ECD_04199 at 4469.895 kb on + strand at 4470.218 kb on + strand at 4470.297 kb on + strand, within ECD_04200 at 4470.328 kb on + strand, within ECD_04200 at 4470.336 kb on + strand, within ECD_04200 at 4470.336 kb on + strand, within ECD_04200 at 4470.436 kb on + strand, within ECD_04200 at 4470.587 kb on + strand, within ECD_04200 at 4470.587 kb on + strand, within ECD_04200 at 4470.587 kb on + strand, within ECD_04200 at 4470.588 kb on - strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.592 kb on - strand, within ECD_04200 at 4470.592 kb on - strand, within ECD_04200 at 4470.592 kb on - strand, within ECD_04200 at 4470.795 kb on - strand at 4470.799 kb on + strand at 4470.934 kb on - strand, within ECD_04201 at 4471.022 kb on - strand, within ECD_04201 at 4471.099 kb on + strand, within ECD_04201 at 4471.260 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.279 kb on - strand, within ECD_04201 at 4471.328 kb on + strand, within ECD_04201 at 4471.396 kb on + strand, within ECD_04201 at 4471.397 kb on - strand, within ECD_04201 at 4471.485 kb on + strand, within ECD_04201 at 4471.486 kb on - strand, within ECD_04201 at 4471.486 kb on - strand, within ECD_04201 at 4471.564 kb on + strand, within ECD_04201 at 4471.749 kb on - strand, within ECD_04201 at 4471.777 kb on - strand, within ECD_04201 at 4471.777 kb on - strand, within ECD_04201 at 4471.777 kb on - strand, within ECD_04201 at 4471.846 kb on + strand at 4471.846 kb on + strand at 4471.847 kb on - strand at 4471.847 kb on - strand at 4471.852 kb on + strand at 4471.853 kb on - strand at 4471.869 kb on - strand at 4471.876 kb on + strand at 4471.881 kb on - strand at 4471.881 kb on - strand at 4471.881 kb on - strand at 4471.881 kb on - strand at 4472.050 kb on + strand at 4472.077 kb on + strand at 4472.077 kb on + strand at 4472.078 kb on - strand at 4472.081 kb on + strand at 4472.126 kb on + strand, within ECD_04202 at 4472.250 kb on - strand, within ECD_04202 at 4472.292 kb on + strand, within ECD_04202 at 4472.328 kb on - strand, within ECD_04202 at 4472.332 kb on - strand, within ECD_04202 at 4472.375 kb on + strand, within ECD_04202 at 4472.510 kb on - strand, within ECD_04202 at 4472.561 kb on - strand, within ECD_04202 at 4472.663 kb on + strand, within ECD_04202 at 4472.663 kb on + strand, within ECD_04202 at 4472.672 kb on + strand, within ECD_04202 at 4472.673 kb on - strand, within ECD_04202 at 4472.705 kb on + strand, within ECD_04202 at 4472.708 kb on + strand, within ECD_04202 at 4472.810 kb on + strand at 4472.895 kb on - strand at 4472.907 kb on + strand at 4472.922 kb on + strand at 4472.925 kb on - strand at 4472.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,469,873 + ECD_04199 0.87 -0.9 4,469,895 + -0.0 4,470,218 + +0.0 4,470,297 + ECD_04200 0.16 -0.3 4,470,328 + ECD_04200 0.21 +0.1 4,470,336 + ECD_04200 0.23 +0.4 4,470,336 + ECD_04200 0.23 -0.1 4,470,436 + ECD_04200 0.41 +0.6 4,470,587 + ECD_04200 0.68 +2.1 4,470,587 + ECD_04200 0.68 +0.3 4,470,587 + ECD_04200 0.68 -0.3 4,470,588 - ECD_04200 0.68 +1.1 4,470,591 + ECD_04200 0.69 +0.7 4,470,591 + ECD_04200 0.69 +0.4 4,470,591 + ECD_04200 0.69 -0.5 4,470,591 + ECD_04200 0.69 -2.2 4,470,591 + ECD_04200 0.69 -1.3 4,470,592 - ECD_04200 0.69 +0.9 4,470,592 - ECD_04200 0.69 +0.9 4,470,592 - ECD_04200 0.69 +0.8 4,470,795 - +2.2 4,470,799 + +0.1 4,470,934 - ECD_04201 0.13 +0.3 4,471,022 - ECD_04201 0.21 -0.6 4,471,099 + ECD_04201 0.27 +0.7 4,471,260 + ECD_04201 0.41 -0.7 4,471,276 + ECD_04201 0.42 -1.5 4,471,276 + ECD_04201 0.42 -0.2 4,471,276 + ECD_04201 0.42 +0.0 4,471,276 + ECD_04201 0.42 +0.2 4,471,277 - ECD_04201 0.42 +0.7 4,471,277 - ECD_04201 0.42 -0.2 4,471,277 - ECD_04201 0.42 +1.1 4,471,277 - ECD_04201 0.42 -0.2 4,471,277 - ECD_04201 0.42 +1.2 4,471,279 - ECD_04201 0.43 -1.0 4,471,328 + ECD_04201 0.47 -0.6 4,471,396 + ECD_04201 0.53 +0.3 4,471,397 - ECD_04201 0.53 -1.0 4,471,485 + ECD_04201 0.60 -0.2 4,471,486 - ECD_04201 0.60 +0.2 4,471,486 - ECD_04201 0.60 -0.3 4,471,564 + ECD_04201 0.67 -1.9 4,471,749 - ECD_04201 0.83 +0.7 4,471,777 - ECD_04201 0.85 -1.1 4,471,777 - ECD_04201 0.85 -0.6 4,471,777 - ECD_04201 0.85 -0.5 4,471,846 + +0.3 4,471,846 + +0.4 4,471,847 - -0.2 4,471,847 - -0.5 4,471,852 + -0.2 4,471,853 - -0.2 4,471,869 - -0.4 4,471,876 + +0.1 4,471,881 - +0.6 4,471,881 - +0.6 4,471,881 - +2.1 4,471,881 - +0.7 4,472,050 + -0.4 4,472,077 + +0.9 4,472,077 + +0.9 4,472,078 - -1.9 4,472,081 + -1.6 4,472,126 + ECD_04202 0.12 +0.3 4,472,250 - ECD_04202 0.26 -0.4 4,472,292 + ECD_04202 0.31 +0.4 4,472,328 - ECD_04202 0.36 -0.3 4,472,332 - ECD_04202 0.36 -1.0 4,472,375 + ECD_04202 0.41 +0.1 4,472,510 - ECD_04202 0.57 +0.0 4,472,561 - ECD_04202 0.63 -0.1 4,472,663 + ECD_04202 0.74 -0.0 4,472,663 + ECD_04202 0.74 -0.1 4,472,672 + ECD_04202 0.75 -0.7 4,472,673 - ECD_04202 0.76 -0.5 4,472,705 + ECD_04202 0.79 +1.5 4,472,708 + ECD_04202 0.80 -1.6 4,472,810 + +1.0 4,472,895 - +0.8 4,472,907 + -1.6 4,472,922 + -0.6 4,472,925 - +0.5 4,472,925 - +0.7
Or see this region's nucleotide sequence