Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04198 and ECD_04199 overlap by 4 nucleotides ECD_04199 and ECD_04200 are separated by 249 nucleotides ECD_04200 and ECD_04201 are separated by 12 nucleotides
ECD_04198: ECD_04198 - SpmB family inner membrane protein, at 4,468,818 to 4,469,279
_04198
ECD_04199: ECD_04199 - nucleoside recognition pore and gate family putative inner membrane transporter, at 4,469,276 to 4,469,959
_04199
ECD_04200: ECD_04200 - RNA 2'-phosphotransferase, at 4,470,209 to 4,470,763
_04200
ECD_04201: ECD_04201 - DUF1228 family putative inner membrane MFS superfamily transporter, at 4,470,776 to 4,471,954
_04201
Position (kb) 4470
4471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4469.217 kb on - strand, within ECD_04198 at 4469.247 kb on - strand at 4469.321 kb on - strand at 4469.375 kb on + strand, within ECD_04199 at 4469.382 kb on - strand, within ECD_04199 at 4469.434 kb on - strand, within ECD_04199 at 4469.434 kb on - strand, within ECD_04199 at 4469.434 kb on - strand, within ECD_04199 at 4469.466 kb on + strand, within ECD_04199 at 4469.531 kb on - strand, within ECD_04199 at 4469.663 kb on - strand, within ECD_04199 at 4469.873 kb on + strand, within ECD_04199 at 4469.895 kb on + strand at 4470.218 kb on + strand at 4470.297 kb on + strand, within ECD_04200 at 4470.328 kb on + strand, within ECD_04200 at 4470.336 kb on + strand, within ECD_04200 at 4470.336 kb on + strand, within ECD_04200 at 4470.436 kb on + strand, within ECD_04200 at 4470.587 kb on + strand, within ECD_04200 at 4470.587 kb on + strand, within ECD_04200 at 4470.587 kb on + strand, within ECD_04200 at 4470.588 kb on - strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.591 kb on + strand, within ECD_04200 at 4470.592 kb on - strand, within ECD_04200 at 4470.592 kb on - strand, within ECD_04200 at 4470.592 kb on - strand, within ECD_04200 at 4470.795 kb on - strand at 4470.799 kb on + strand at 4470.934 kb on - strand, within ECD_04201 at 4471.022 kb on - strand, within ECD_04201 at 4471.099 kb on + strand, within ECD_04201 at 4471.260 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.276 kb on + strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.277 kb on - strand, within ECD_04201 at 4471.279 kb on - strand, within ECD_04201 at 4471.328 kb on + strand, within ECD_04201 at 4471.396 kb on + strand, within ECD_04201 at 4471.397 kb on - strand, within ECD_04201 at 4471.485 kb on + strand, within ECD_04201 at 4471.486 kb on - strand, within ECD_04201 at 4471.486 kb on - strand, within ECD_04201 at 4471.564 kb on + strand, within ECD_04201 at 4471.749 kb on - strand, within ECD_04201
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,469,217 - ECD_04198 0.86 -0.3 4,469,247 - -2.0 4,469,321 - +0.6 4,469,375 + ECD_04199 0.14 -3.0 4,469,382 - ECD_04199 0.15 -0.5 4,469,434 - ECD_04199 0.23 -1.1 4,469,434 - ECD_04199 0.23 -0.1 4,469,434 - ECD_04199 0.23 -0.5 4,469,466 + ECD_04199 0.28 -0.8 4,469,531 - ECD_04199 0.37 +0.2 4,469,663 - ECD_04199 0.57 +0.3 4,469,873 + ECD_04199 0.87 -0.9 4,469,895 + -0.0 4,470,218 + +0.0 4,470,297 + ECD_04200 0.16 -0.3 4,470,328 + ECD_04200 0.21 +0.1 4,470,336 + ECD_04200 0.23 +0.4 4,470,336 + ECD_04200 0.23 -0.1 4,470,436 + ECD_04200 0.41 +0.6 4,470,587 + ECD_04200 0.68 +2.1 4,470,587 + ECD_04200 0.68 +0.3 4,470,587 + ECD_04200 0.68 -0.3 4,470,588 - ECD_04200 0.68 +1.1 4,470,591 + ECD_04200 0.69 +0.7 4,470,591 + ECD_04200 0.69 +0.4 4,470,591 + ECD_04200 0.69 -0.5 4,470,591 + ECD_04200 0.69 -2.2 4,470,591 + ECD_04200 0.69 -1.3 4,470,592 - ECD_04200 0.69 +0.9 4,470,592 - ECD_04200 0.69 +0.9 4,470,592 - ECD_04200 0.69 +0.8 4,470,795 - +2.2 4,470,799 + +0.1 4,470,934 - ECD_04201 0.13 +0.3 4,471,022 - ECD_04201 0.21 -0.6 4,471,099 + ECD_04201 0.27 +0.7 4,471,260 + ECD_04201 0.41 -0.7 4,471,276 + ECD_04201 0.42 -1.5 4,471,276 + ECD_04201 0.42 -0.2 4,471,276 + ECD_04201 0.42 +0.0 4,471,276 + ECD_04201 0.42 +0.2 4,471,277 - ECD_04201 0.42 +0.7 4,471,277 - ECD_04201 0.42 -0.2 4,471,277 - ECD_04201 0.42 +1.1 4,471,277 - ECD_04201 0.42 -0.2 4,471,277 - ECD_04201 0.42 +1.2 4,471,279 - ECD_04201 0.43 -1.0 4,471,328 + ECD_04201 0.47 -0.6 4,471,396 + ECD_04201 0.53 +0.3 4,471,397 - ECD_04201 0.53 -1.0 4,471,485 + ECD_04201 0.60 -0.2 4,471,486 - ECD_04201 0.60 +0.2 4,471,486 - ECD_04201 0.60 -0.3 4,471,564 + ECD_04201 0.67 -1.9 4,471,749 - ECD_04201 0.83 +0.7
Or see this region's nucleotide sequence