Strain Fitness in Escherichia coli BL21 around ECD_04191

Experiment: Laval1257

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04190 and ECD_04191 are separated by 339 nucleotidesECD_04191 and ECD_04192 are separated by 80 nucleotides ECD_04190: ECD_04190 - fructuronate transporter, at 4,459,232 to 4,460,575 _04190 ECD_04191: ECD_04191 - mannonate hydrolase, at 4,460,915 to 4,462,099 _04191 ECD_04192: ECD_04192 - D-mannonate oxidoreductase, NAD-dependent, at 4,462,180 to 4,463,640 _04192 Position (kb) 4460 4461 4462 4463Strain fitness (log2 ratio) -2 -1 0 1at 4459.916 kb on - strand, within ECD_04190at 4459.921 kb on + strand, within ECD_04190at 4459.922 kb on - strand, within ECD_04190at 4459.922 kb on - strand, within ECD_04190at 4459.922 kb on - strand, within ECD_04190at 4459.925 kb on + strand, within ECD_04190at 4460.010 kb on - strand, within ECD_04190at 4460.031 kb on - strand, within ECD_04190at 4460.037 kb on + strand, within ECD_04190at 4460.037 kb on + strand, within ECD_04190at 4460.037 kb on + strand, within ECD_04190at 4460.038 kb on - strand, within ECD_04190at 4460.043 kb on + strand, within ECD_04190at 4460.043 kb on + strand, within ECD_04190at 4460.043 kb on + strand, within ECD_04190at 4460.044 kb on - strand, within ECD_04190at 4460.044 kb on - strand, within ECD_04190at 4460.044 kb on - strand, within ECD_04190at 4460.067 kb on + strand, within ECD_04190at 4460.192 kb on - strand, within ECD_04190at 4460.213 kb on - strand, within ECD_04190at 4460.226 kb on + strand, within ECD_04190at 4460.226 kb on + strand, within ECD_04190at 4460.277 kb on - strand, within ECD_04190at 4460.277 kb on - strand, within ECD_04190at 4460.277 kb on - strand, within ECD_04190at 4460.280 kb on + strand, within ECD_04190at 4460.309 kb on - strand, within ECD_04190at 4460.316 kb on - strand, within ECD_04190at 4460.350 kb on + strand, within ECD_04190at 4460.419 kb on + strand, within ECD_04190at 4460.563 kb on + strandat 4460.583 kb on + strandat 4460.588 kb on + strandat 4460.589 kb on - strandat 4460.675 kb on + strandat 4460.675 kb on + strandat 4460.793 kb on - strandat 4460.852 kb on + strandat 4460.852 kb on + strandat 4460.852 kb on + strandat 4460.853 kb on - strandat 4460.853 kb on - strandat 4460.853 kb on - strandat 4460.895 kb on + strandat 4460.896 kb on - strandat 4461.031 kb on - strandat 4461.031 kb on - strandat 4461.124 kb on + strand, within ECD_04191at 4461.146 kb on + strand, within ECD_04191at 4461.146 kb on + strand, within ECD_04191at 4461.147 kb on - strand, within ECD_04191at 4461.147 kb on - strand, within ECD_04191at 4461.147 kb on - strand, within ECD_04191at 4461.147 kb on - strand, within ECD_04191at 4461.167 kb on + strand, within ECD_04191at 4461.167 kb on + strand, within ECD_04191at 4461.167 kb on + strand, within ECD_04191at 4461.219 kb on - strand, within ECD_04191at 4461.264 kb on - strand, within ECD_04191at 4461.406 kb on + strand, within ECD_04191at 4461.407 kb on - strand, within ECD_04191at 4461.440 kb on - strand, within ECD_04191at 4461.476 kb on + strand, within ECD_04191at 4461.477 kb on - strand, within ECD_04191at 4461.512 kb on + strand, within ECD_04191at 4461.513 kb on - strand, within ECD_04191at 4461.521 kb on - strand, within ECD_04191at 4461.601 kb on + strand, within ECD_04191at 4461.673 kb on + strand, within ECD_04191at 4461.674 kb on - strand, within ECD_04191at 4461.719 kb on - strand, within ECD_04191at 4461.770 kb on - strand, within ECD_04191at 4461.770 kb on - strand, within ECD_04191at 4461.794 kb on - strand, within ECD_04191at 4461.797 kb on + strand, within ECD_04191at 4461.880 kb on + strand, within ECD_04191at 4461.881 kb on - strand, within ECD_04191at 4461.881 kb on - strand, within ECD_04191at 4461.881 kb on - strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4462.016 kb on + strandat 4462.016 kb on + strandat 4462.098 kb on - strandat 4462.177 kb on - strandat 4462.185 kb on + strandat 4462.188 kb on + strandat 4462.188 kb on + strandat 4462.188 kb on + strandat 4462.300 kb on + strandat 4462.300 kb on + strandat 4462.301 kb on - strandat 4462.301 kb on - strandat 4462.301 kb on - strandat 4462.353 kb on + strand, within ECD_04192at 4462.414 kb on + strand, within ECD_04192at 4462.509 kb on + strand, within ECD_04192at 4462.509 kb on + strand, within ECD_04192at 4462.510 kb on - strand, within ECD_04192at 4462.670 kb on - strand, within ECD_04192at 4462.720 kb on - strand, within ECD_04192at 4462.971 kb on + strand, within ECD_04192at 4462.972 kb on - strand, within ECD_04192at 4463.058 kb on + strand, within ECD_04192

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
remove
4,459,916 - ECD_04190 0.51 +0.6
4,459,921 + ECD_04190 0.51 -0.7
4,459,922 - ECD_04190 0.51 -0.1
4,459,922 - ECD_04190 0.51 +0.2
4,459,922 - ECD_04190 0.51 +1.1
4,459,925 + ECD_04190 0.52 +0.1
4,460,010 - ECD_04190 0.58 +0.2
4,460,031 - ECD_04190 0.59 +0.3
4,460,037 + ECD_04190 0.60 +0.5
4,460,037 + ECD_04190 0.60 -0.1
4,460,037 + ECD_04190 0.60 +0.0
4,460,038 - ECD_04190 0.60 +0.5
4,460,043 + ECD_04190 0.60 -2.1
4,460,043 + ECD_04190 0.60 +0.4
4,460,043 + ECD_04190 0.60 +0.1
4,460,044 - ECD_04190 0.60 +1.6
4,460,044 - ECD_04190 0.60 +0.5
4,460,044 - ECD_04190 0.60 +0.2
4,460,067 + ECD_04190 0.62 -1.2
4,460,192 - ECD_04190 0.71 -1.2
4,460,213 - ECD_04190 0.73 -1.0
4,460,226 + ECD_04190 0.74 +0.9
4,460,226 + ECD_04190 0.74 +1.1
4,460,277 - ECD_04190 0.78 -0.2
4,460,277 - ECD_04190 0.78 +0.8
4,460,277 - ECD_04190 0.78 -0.4
4,460,280 + ECD_04190 0.78 -1.2
4,460,309 - ECD_04190 0.80 +0.2
4,460,316 - ECD_04190 0.81 +0.1
4,460,350 + ECD_04190 0.83 +0.1
4,460,419 + ECD_04190 0.88 -0.4
4,460,563 + +1.3
4,460,583 + -1.8
4,460,588 + +0.6
4,460,589 - -0.4
4,460,675 + -1.1
4,460,675 + -1.1
4,460,793 - -1.1
4,460,852 + +0.4
4,460,852 + +0.0
4,460,852 + -0.2
4,460,853 - +0.4
4,460,853 - +0.5
4,460,853 - +0.2
4,460,895 + +1.6
4,460,896 - +0.7
4,461,031 - -0.8
4,461,031 - +0.3
4,461,124 + ECD_04191 0.18 +0.1
4,461,146 + ECD_04191 0.19 +1.3
4,461,146 + ECD_04191 0.19 +1.0
4,461,147 - ECD_04191 0.20 +0.5
4,461,147 - ECD_04191 0.20 +0.3
4,461,147 - ECD_04191 0.20 +1.0
4,461,147 - ECD_04191 0.20 -0.1
4,461,167 + ECD_04191 0.21 +0.6
4,461,167 + ECD_04191 0.21 +0.0
4,461,167 + ECD_04191 0.21 +0.5
4,461,219 - ECD_04191 0.26 +0.1
4,461,264 - ECD_04191 0.29 -0.6
4,461,406 + ECD_04191 0.41 -1.5
4,461,407 - ECD_04191 0.42 +0.9
4,461,440 - ECD_04191 0.44 +0.6
4,461,476 + ECD_04191 0.47 -1.5
4,461,477 - ECD_04191 0.47 +0.6
4,461,512 + ECD_04191 0.50 -1.4
4,461,513 - ECD_04191 0.50 +0.5
4,461,521 - ECD_04191 0.51 -0.6
4,461,601 + ECD_04191 0.58 -0.9
4,461,673 + ECD_04191 0.64 +1.1
4,461,674 - ECD_04191 0.64 +0.2
4,461,719 - ECD_04191 0.68 -0.3
4,461,770 - ECD_04191 0.72 +0.3
4,461,770 - ECD_04191 0.72 -0.7
4,461,794 - ECD_04191 0.74 -0.6
4,461,797 + ECD_04191 0.74 +0.5
4,461,880 + ECD_04191 0.81 -0.2
4,461,881 - ECD_04191 0.82 -0.6
4,461,881 - ECD_04191 0.82 -0.2
4,461,881 - ECD_04191 0.82 -0.3
4,461,884 + ECD_04191 0.82 -0.4
4,461,884 + ECD_04191 0.82 -0.1
4,461,884 + ECD_04191 0.82 +0.2
4,461,884 + ECD_04191 0.82 -0.5
4,461,885 - ECD_04191 0.82 -0.5
4,461,885 - ECD_04191 0.82 +0.5
4,461,885 - ECD_04191 0.82 -2.1
4,461,885 - ECD_04191 0.82 +0.2
4,461,885 - ECD_04191 0.82 -0.1
4,462,016 + +0.3
4,462,016 + -0.2
4,462,098 - -0.9
4,462,177 - +0.7
4,462,185 + +0.6
4,462,188 + +0.3
4,462,188 + +0.9
4,462,188 + +0.7
4,462,300 + +0.8
4,462,300 + +0.4
4,462,301 - +0.7
4,462,301 - -0.1
4,462,301 - +1.3
4,462,353 + ECD_04192 0.12 -1.7
4,462,414 + ECD_04192 0.16 -0.8
4,462,509 + ECD_04192 0.23 +0.4
4,462,509 + ECD_04192 0.23 -0.4
4,462,510 - ECD_04192 0.23 -1.1
4,462,670 - ECD_04192 0.34 +0.6
4,462,720 - ECD_04192 0.37 -0.9
4,462,971 + ECD_04192 0.54 -0.4
4,462,972 - ECD_04192 0.54 -0.1
4,463,058 + ECD_04192 0.60 +0.2

Or see this region's nucleotide sequence