Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04190 and ECD_04191 are separated by 339 nucleotides ECD_04191 and ECD_04192 are separated by 80 nucleotides
ECD_04190: ECD_04190 - fructuronate transporter, at 4,459,232 to 4,460,575
_04190
ECD_04191: ECD_04191 - mannonate hydrolase, at 4,460,915 to 4,462,099
_04191
ECD_04192: ECD_04192 - D-mannonate oxidoreductase, NAD-dependent, at 4,462,180 to 4,463,640
_04192
Position (kb)
4460
4461
4462
4463 Strain fitness (log2 ratio)
-2
-1
0
1 at 4459.916 kb on - strand, within ECD_04190 at 4459.921 kb on + strand, within ECD_04190 at 4459.922 kb on - strand, within ECD_04190 at 4459.922 kb on - strand, within ECD_04190 at 4459.922 kb on - strand, within ECD_04190 at 4459.925 kb on + strand, within ECD_04190 at 4460.010 kb on - strand, within ECD_04190 at 4460.031 kb on - strand, within ECD_04190 at 4460.037 kb on + strand, within ECD_04190 at 4460.037 kb on + strand, within ECD_04190 at 4460.037 kb on + strand, within ECD_04190 at 4460.038 kb on - strand, within ECD_04190 at 4460.043 kb on + strand, within ECD_04190 at 4460.043 kb on + strand, within ECD_04190 at 4460.043 kb on + strand, within ECD_04190 at 4460.044 kb on - strand, within ECD_04190 at 4460.044 kb on - strand, within ECD_04190 at 4460.044 kb on - strand, within ECD_04190 at 4460.067 kb on + strand, within ECD_04190 at 4460.192 kb on - strand, within ECD_04190 at 4460.213 kb on - strand, within ECD_04190 at 4460.226 kb on + strand, within ECD_04190 at 4460.226 kb on + strand, within ECD_04190 at 4460.277 kb on - strand, within ECD_04190 at 4460.277 kb on - strand, within ECD_04190 at 4460.277 kb on - strand, within ECD_04190 at 4460.280 kb on + strand, within ECD_04190 at 4460.309 kb on - strand, within ECD_04190 at 4460.316 kb on - strand, within ECD_04190 at 4460.350 kb on + strand, within ECD_04190 at 4460.419 kb on + strand, within ECD_04190 at 4460.563 kb on + strand at 4460.583 kb on + strand at 4460.588 kb on + strand at 4460.589 kb on - strand at 4460.675 kb on + strand at 4460.675 kb on + strand at 4460.793 kb on - strand at 4460.852 kb on + strand at 4460.852 kb on + strand at 4460.852 kb on + strand at 4460.853 kb on - strand at 4460.853 kb on - strand at 4460.853 kb on - strand at 4460.895 kb on + strand at 4460.896 kb on - strand at 4461.031 kb on - strand at 4461.031 kb on - strand at 4461.124 kb on + strand, within ECD_04191 at 4461.146 kb on + strand, within ECD_04191 at 4461.146 kb on + strand, within ECD_04191 at 4461.147 kb on - strand, within ECD_04191 at 4461.147 kb on - strand, within ECD_04191 at 4461.147 kb on - strand, within ECD_04191 at 4461.147 kb on - strand, within ECD_04191 at 4461.167 kb on + strand, within ECD_04191 at 4461.167 kb on + strand, within ECD_04191 at 4461.167 kb on + strand, within ECD_04191 at 4461.219 kb on - strand, within ECD_04191 at 4461.264 kb on - strand, within ECD_04191 at 4461.406 kb on + strand, within ECD_04191 at 4461.407 kb on - strand, within ECD_04191 at 4461.440 kb on - strand, within ECD_04191 at 4461.476 kb on + strand, within ECD_04191 at 4461.477 kb on - strand, within ECD_04191 at 4461.512 kb on + strand, within ECD_04191 at 4461.513 kb on - strand, within ECD_04191 at 4461.521 kb on - strand, within ECD_04191 at 4461.601 kb on + strand, within ECD_04191 at 4461.673 kb on + strand, within ECD_04191 at 4461.674 kb on - strand, within ECD_04191 at 4461.719 kb on - strand, within ECD_04191 at 4461.770 kb on - strand, within ECD_04191 at 4461.770 kb on - strand, within ECD_04191 at 4461.794 kb on - strand, within ECD_04191 at 4461.797 kb on + strand, within ECD_04191 at 4461.880 kb on + strand, within ECD_04191 at 4461.881 kb on - strand, within ECD_04191 at 4461.881 kb on - strand, within ECD_04191 at 4461.881 kb on - strand, within ECD_04191 at 4461.884 kb on + strand, within ECD_04191 at 4461.884 kb on + strand, within ECD_04191 at 4461.884 kb on + strand, within ECD_04191 at 4461.884 kb on + strand, within ECD_04191 at 4461.885 kb on - strand, within ECD_04191 at 4461.885 kb on - strand, within ECD_04191 at 4461.885 kb on - strand, within ECD_04191 at 4461.885 kb on - strand, within ECD_04191 at 4461.885 kb on - strand, within ECD_04191 at 4462.016 kb on + strand at 4462.016 kb on + strand at 4462.098 kb on - strand at 4462.177 kb on - strand at 4462.185 kb on + strand at 4462.188 kb on + strand at 4462.188 kb on + strand at 4462.188 kb on + strand at 4462.300 kb on + strand at 4462.300 kb on + strand at 4462.301 kb on - strand at 4462.301 kb on - strand at 4462.301 kb on - strand at 4462.353 kb on + strand, within ECD_04192 at 4462.414 kb on + strand, within ECD_04192 at 4462.509 kb on + strand, within ECD_04192 at 4462.509 kb on + strand, within ECD_04192 at 4462.510 kb on - strand, within ECD_04192 at 4462.670 kb on - strand, within ECD_04192 at 4462.720 kb on - strand, within ECD_04192 at 4462.971 kb on + strand, within ECD_04192 at 4462.972 kb on - strand, within ECD_04192 at 4463.058 kb on + strand, within ECD_04192
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,459,916 - ECD_04190 0.51 +0.6 4,459,921 + ECD_04190 0.51 -0.7 4,459,922 - ECD_04190 0.51 -0.1 4,459,922 - ECD_04190 0.51 +0.2 4,459,922 - ECD_04190 0.51 +1.1 4,459,925 + ECD_04190 0.52 +0.1 4,460,010 - ECD_04190 0.58 +0.2 4,460,031 - ECD_04190 0.59 +0.3 4,460,037 + ECD_04190 0.60 +0.5 4,460,037 + ECD_04190 0.60 -0.1 4,460,037 + ECD_04190 0.60 +0.0 4,460,038 - ECD_04190 0.60 +0.5 4,460,043 + ECD_04190 0.60 -2.1 4,460,043 + ECD_04190 0.60 +0.4 4,460,043 + ECD_04190 0.60 +0.1 4,460,044 - ECD_04190 0.60 +1.6 4,460,044 - ECD_04190 0.60 +0.5 4,460,044 - ECD_04190 0.60 +0.2 4,460,067 + ECD_04190 0.62 -1.2 4,460,192 - ECD_04190 0.71 -1.2 4,460,213 - ECD_04190 0.73 -1.0 4,460,226 + ECD_04190 0.74 +0.9 4,460,226 + ECD_04190 0.74 +1.1 4,460,277 - ECD_04190 0.78 -0.2 4,460,277 - ECD_04190 0.78 +0.8 4,460,277 - ECD_04190 0.78 -0.4 4,460,280 + ECD_04190 0.78 -1.2 4,460,309 - ECD_04190 0.80 +0.2 4,460,316 - ECD_04190 0.81 +0.1 4,460,350 + ECD_04190 0.83 +0.1 4,460,419 + ECD_04190 0.88 -0.4 4,460,563 + +1.3 4,460,583 + -1.8 4,460,588 + +0.6 4,460,589 - -0.4 4,460,675 + -1.1 4,460,675 + -1.1 4,460,793 - -1.1 4,460,852 + +0.4 4,460,852 + +0.0 4,460,852 + -0.2 4,460,853 - +0.4 4,460,853 - +0.5 4,460,853 - +0.2 4,460,895 + +1.6 4,460,896 - +0.7 4,461,031 - -0.8 4,461,031 - +0.3 4,461,124 + ECD_04191 0.18 +0.1 4,461,146 + ECD_04191 0.19 +1.3 4,461,146 + ECD_04191 0.19 +1.0 4,461,147 - ECD_04191 0.20 +0.5 4,461,147 - ECD_04191 0.20 +0.3 4,461,147 - ECD_04191 0.20 +1.0 4,461,147 - ECD_04191 0.20 -0.1 4,461,167 + ECD_04191 0.21 +0.6 4,461,167 + ECD_04191 0.21 +0.0 4,461,167 + ECD_04191 0.21 +0.5 4,461,219 - ECD_04191 0.26 +0.1 4,461,264 - ECD_04191 0.29 -0.6 4,461,406 + ECD_04191 0.41 -1.5 4,461,407 - ECD_04191 0.42 +0.9 4,461,440 - ECD_04191 0.44 +0.6 4,461,476 + ECD_04191 0.47 -1.5 4,461,477 - ECD_04191 0.47 +0.6 4,461,512 + ECD_04191 0.50 -1.4 4,461,513 - ECD_04191 0.50 +0.5 4,461,521 - ECD_04191 0.51 -0.6 4,461,601 + ECD_04191 0.58 -0.9 4,461,673 + ECD_04191 0.64 +1.1 4,461,674 - ECD_04191 0.64 +0.2 4,461,719 - ECD_04191 0.68 -0.3 4,461,770 - ECD_04191 0.72 +0.3 4,461,770 - ECD_04191 0.72 -0.7 4,461,794 - ECD_04191 0.74 -0.6 4,461,797 + ECD_04191 0.74 +0.5 4,461,880 + ECD_04191 0.81 -0.2 4,461,881 - ECD_04191 0.82 -0.6 4,461,881 - ECD_04191 0.82 -0.2 4,461,881 - ECD_04191 0.82 -0.3 4,461,884 + ECD_04191 0.82 -0.4 4,461,884 + ECD_04191 0.82 -0.1 4,461,884 + ECD_04191 0.82 +0.2 4,461,884 + ECD_04191 0.82 -0.5 4,461,885 - ECD_04191 0.82 -0.5 4,461,885 - ECD_04191 0.82 +0.5 4,461,885 - ECD_04191 0.82 -2.1 4,461,885 - ECD_04191 0.82 +0.2 4,461,885 - ECD_04191 0.82 -0.1 4,462,016 + +0.3 4,462,016 + -0.2 4,462,098 - -0.9 4,462,177 - +0.7 4,462,185 + +0.6 4,462,188 + +0.3 4,462,188 + +0.9 4,462,188 + +0.7 4,462,300 + +0.8 4,462,300 + +0.4 4,462,301 - +0.7 4,462,301 - -0.1 4,462,301 - +1.3 4,462,353 + ECD_04192 0.12 -1.7 4,462,414 + ECD_04192 0.16 -0.8 4,462,509 + ECD_04192 0.23 +0.4 4,462,509 + ECD_04192 0.23 -0.4 4,462,510 - ECD_04192 0.23 -1.1 4,462,670 - ECD_04192 0.34 +0.6 4,462,720 - ECD_04192 0.37 -0.9 4,462,971 + ECD_04192 0.54 -0.4 4,462,972 - ECD_04192 0.54 -0.1 4,463,058 + ECD_04192 0.60 +0.2
Or see this region's nucleotide sequence