Strain Fitness in Escherichia coli BL21 around ECD_04071

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04068 and ECD_04069 are separated by 4 nucleotidesECD_04069 and ECD_04070 are separated by 41 nucleotidesECD_04070 and ECD_04071 are separated by 101 nucleotidesECD_04071 and ECD_04072 are separated by 92 nucleotides ECD_04068: ECD_04068 - primosomal protein N, at 4,332,040 to 4,332,354 _04068 ECD_04069: ECD_04069 - 30S ribosomal subunit protein S18, at 4,332,359 to 4,332,586 _04069 ECD_04070: ECD_04070 - 50S ribosomal subunit protein L9, at 4,332,628 to 4,333,077 _04070 ECD_04071: ECD_04071 - Hexuronate transporter, at 4,333,179 to 4,334,456 _04071 ECD_04072: ECD_04072 - putative oxidoreductase, at 4,334,549 to 4,336,621 _04072 Position (kb) 4333 4334 4335Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4332.626 kb on + strandat 4332.636 kb on + strandat 4332.636 kb on + strandat 4332.795 kb on + strand, within ECD_04070at 4332.822 kb on + strand, within ECD_04070at 4332.861 kb on + strand, within ECD_04070at 4332.861 kb on + strand, within ECD_04070at 4332.891 kb on + strand, within ECD_04070at 4332.891 kb on + strand, within ECD_04070at 4332.935 kb on + strand, within ECD_04070at 4333.097 kb on + strandat 4333.131 kb on - strandat 4333.131 kb on - strandat 4333.154 kb on - strandat 4333.156 kb on + strandat 4333.157 kb on - strandat 4333.157 kb on - strandat 4333.159 kb on - strandat 4333.170 kb on - strandat 4333.170 kb on - strandat 4333.173 kb on + strandat 4333.174 kb on - strandat 4333.174 kb on - strandat 4333.174 kb on - strandat 4333.197 kb on + strandat 4333.197 kb on + strandat 4333.384 kb on - strand, within ECD_04071at 4333.384 kb on - strand, within ECD_04071at 4333.425 kb on + strand, within ECD_04071at 4333.461 kb on - strand, within ECD_04071at 4333.499 kb on + strand, within ECD_04071at 4333.539 kb on - strand, within ECD_04071at 4333.547 kb on + strand, within ECD_04071at 4333.677 kb on - strand, within ECD_04071at 4333.817 kb on + strand, within ECD_04071at 4333.855 kb on + strand, within ECD_04071at 4333.973 kb on + strand, within ECD_04071at 4334.036 kb on + strand, within ECD_04071at 4334.148 kb on - strand, within ECD_04071at 4334.283 kb on - strand, within ECD_04071at 4334.367 kb on - strandat 4334.371 kb on - strandat 4334.371 kb on - strandat 4334.371 kb on - strandat 4334.413 kb on - strandat 4334.776 kb on + strand, within ECD_04072at 4334.780 kb on + strand, within ECD_04072at 4334.781 kb on - strand, within ECD_04072at 4334.815 kb on + strand, within ECD_04072at 4334.815 kb on + strand, within ECD_04072at 4334.817 kb on + strand, within ECD_04072at 4334.817 kb on + strand, within ECD_04072at 4334.817 kb on + strand, within ECD_04072at 4334.817 kb on + strand, within ECD_04072at 4334.817 kb on + strand, within ECD_04072at 4334.817 kb on + strand, within ECD_04072at 4334.818 kb on - strand, within ECD_04072at 4334.872 kb on + strand, within ECD_04072at 4334.872 kb on + strand, within ECD_04072at 4335.073 kb on + strand, within ECD_04072at 4335.086 kb on + strand, within ECD_04072at 4335.088 kb on + strand, within ECD_04072at 4335.089 kb on - strand, within ECD_04072at 4335.119 kb on + strand, within ECD_04072at 4335.120 kb on - strand, within ECD_04072at 4335.121 kb on + strand, within ECD_04072at 4335.122 kb on - strand, within ECD_04072at 4335.133 kb on + strand, within ECD_04072at 4335.311 kb on - strand, within ECD_04072at 4335.320 kb on - strand, within ECD_04072at 4335.320 kb on - strand, within ECD_04072at 4335.370 kb on + strand, within ECD_04072at 4335.382 kb on + strand, within ECD_04072at 4335.382 kb on + strand, within ECD_04072at 4335.383 kb on - strand, within ECD_04072at 4335.450 kb on + strand, within ECD_04072

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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4,332,626 + +0.2
4,332,636 + +1.8
4,332,636 + +2.5
4,332,795 + ECD_04070 0.37 +1.7
4,332,822 + ECD_04070 0.43 +1.7
4,332,861 + ECD_04070 0.52 +1.6
4,332,861 + ECD_04070 0.52 +3.3
4,332,891 + ECD_04070 0.58 +1.4
4,332,891 + ECD_04070 0.58 +1.1
4,332,935 + ECD_04070 0.68 +2.7
4,333,097 + -0.3
4,333,131 - +0.7
4,333,131 - -0.6
4,333,154 - +0.1
4,333,156 + +0.2
4,333,157 - -0.9
4,333,157 - +0.7
4,333,159 - +0.4
4,333,170 - +0.0
4,333,170 - -0.2
4,333,173 + -0.8
4,333,174 - -0.2
4,333,174 - +0.2
4,333,174 - +0.1
4,333,197 + -0.0
4,333,197 + +0.3
4,333,384 - ECD_04071 0.16 +0.3
4,333,384 - ECD_04071 0.16 +0.3
4,333,425 + ECD_04071 0.19 -0.2
4,333,461 - ECD_04071 0.22 +1.0
4,333,499 + ECD_04071 0.25 -0.1
4,333,539 - ECD_04071 0.28 +0.1
4,333,547 + ECD_04071 0.29 -1.3
4,333,677 - ECD_04071 0.39 +0.2
4,333,817 + ECD_04071 0.50 +0.8
4,333,855 + ECD_04071 0.53 -0.3
4,333,973 + ECD_04071 0.62 -1.1
4,334,036 + ECD_04071 0.67 -0.8
4,334,148 - ECD_04071 0.76 -0.2
4,334,283 - ECD_04071 0.86 +1.3
4,334,367 - +0.3
4,334,371 - +0.2
4,334,371 - +0.6
4,334,371 - +1.1
4,334,413 - -0.2
4,334,776 + ECD_04072 0.11 +0.3
4,334,780 + ECD_04072 0.11 +1.6
4,334,781 - ECD_04072 0.11 -1.1
4,334,815 + ECD_04072 0.13 -1.0
4,334,815 + ECD_04072 0.13 -2.0
4,334,817 + ECD_04072 0.13 +0.8
4,334,817 + ECD_04072 0.13 +0.1
4,334,817 + ECD_04072 0.13 -0.4
4,334,817 + ECD_04072 0.13 -0.1
4,334,817 + ECD_04072 0.13 -0.3
4,334,817 + ECD_04072 0.13 -1.7
4,334,818 - ECD_04072 0.13 +1.2
4,334,872 + ECD_04072 0.16 -1.2
4,334,872 + ECD_04072 0.16 -0.3
4,335,073 + ECD_04072 0.25 +0.7
4,335,086 + ECD_04072 0.26 -0.3
4,335,088 + ECD_04072 0.26 +2.7
4,335,089 - ECD_04072 0.26 +1.0
4,335,119 + ECD_04072 0.27 -0.0
4,335,120 - ECD_04072 0.28 -0.2
4,335,121 + ECD_04072 0.28 -0.3
4,335,122 - ECD_04072 0.28 +2.4
4,335,133 + ECD_04072 0.28 -2.2
4,335,311 - ECD_04072 0.37 +0.8
4,335,320 - ECD_04072 0.37 -0.5
4,335,320 - ECD_04072 0.37 -0.6
4,335,370 + ECD_04072 0.40 +0.1
4,335,382 + ECD_04072 0.40 +0.6
4,335,382 + ECD_04072 0.40 -0.5
4,335,383 - ECD_04072 0.40 -0.2
4,335,450 + ECD_04072 0.43 +2.1

Or see this region's nucleotide sequence