Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04068 and ECD_04069 are separated by 4 nucleotides ECD_04069 and ECD_04070 are separated by 41 nucleotides ECD_04070 and ECD_04071 are separated by 101 nucleotides ECD_04071 and ECD_04072 are separated by 92 nucleotides
ECD_04068: ECD_04068 - primosomal protein N, at 4,332,040 to 4,332,354
_04068
ECD_04069: ECD_04069 - 30S ribosomal subunit protein S18, at 4,332,359 to 4,332,586
_04069
ECD_04070: ECD_04070 - 50S ribosomal subunit protein L9, at 4,332,628 to 4,333,077
_04070
ECD_04071: ECD_04071 - Hexuronate transporter, at 4,333,179 to 4,334,456
_04071
ECD_04072: ECD_04072 - putative oxidoreductase, at 4,334,549 to 4,336,621
_04072
Position (kb)
4333
4334
4335 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4332.626 kb on + strand at 4332.636 kb on + strand at 4332.636 kb on + strand at 4332.795 kb on + strand, within ECD_04070 at 4332.822 kb on + strand, within ECD_04070 at 4332.861 kb on + strand, within ECD_04070 at 4332.861 kb on + strand, within ECD_04070 at 4332.891 kb on + strand, within ECD_04070 at 4332.891 kb on + strand, within ECD_04070 at 4332.935 kb on + strand, within ECD_04070 at 4333.097 kb on + strand at 4333.131 kb on - strand at 4333.131 kb on - strand at 4333.154 kb on - strand at 4333.156 kb on + strand at 4333.157 kb on - strand at 4333.157 kb on - strand at 4333.159 kb on - strand at 4333.170 kb on - strand at 4333.170 kb on - strand at 4333.173 kb on + strand at 4333.174 kb on - strand at 4333.174 kb on - strand at 4333.174 kb on - strand at 4333.197 kb on + strand at 4333.197 kb on + strand at 4333.384 kb on - strand, within ECD_04071 at 4333.384 kb on - strand, within ECD_04071 at 4333.425 kb on + strand, within ECD_04071 at 4333.461 kb on - strand, within ECD_04071 at 4333.499 kb on + strand, within ECD_04071 at 4333.539 kb on - strand, within ECD_04071 at 4333.547 kb on + strand, within ECD_04071 at 4333.677 kb on - strand, within ECD_04071 at 4333.817 kb on + strand, within ECD_04071 at 4333.855 kb on + strand, within ECD_04071 at 4333.973 kb on + strand, within ECD_04071 at 4334.036 kb on + strand, within ECD_04071 at 4334.148 kb on - strand, within ECD_04071 at 4334.283 kb on - strand, within ECD_04071 at 4334.367 kb on - strand at 4334.371 kb on - strand at 4334.371 kb on - strand at 4334.371 kb on - strand at 4334.413 kb on - strand at 4334.776 kb on + strand, within ECD_04072 at 4334.780 kb on + strand, within ECD_04072 at 4334.781 kb on - strand, within ECD_04072 at 4334.815 kb on + strand, within ECD_04072 at 4334.815 kb on + strand, within ECD_04072 at 4334.817 kb on + strand, within ECD_04072 at 4334.817 kb on + strand, within ECD_04072 at 4334.817 kb on + strand, within ECD_04072 at 4334.817 kb on + strand, within ECD_04072 at 4334.817 kb on + strand, within ECD_04072 at 4334.817 kb on + strand, within ECD_04072 at 4334.818 kb on - strand, within ECD_04072 at 4334.872 kb on + strand, within ECD_04072 at 4334.872 kb on + strand, within ECD_04072 at 4335.073 kb on + strand, within ECD_04072 at 4335.086 kb on + strand, within ECD_04072 at 4335.088 kb on + strand, within ECD_04072 at 4335.089 kb on - strand, within ECD_04072 at 4335.119 kb on + strand, within ECD_04072 at 4335.120 kb on - strand, within ECD_04072 at 4335.121 kb on + strand, within ECD_04072 at 4335.122 kb on - strand, within ECD_04072 at 4335.133 kb on + strand, within ECD_04072 at 4335.311 kb on - strand, within ECD_04072 at 4335.320 kb on - strand, within ECD_04072 at 4335.320 kb on - strand, within ECD_04072 at 4335.370 kb on + strand, within ECD_04072 at 4335.382 kb on + strand, within ECD_04072 at 4335.382 kb on + strand, within ECD_04072 at 4335.383 kb on - strand, within ECD_04072 at 4335.450 kb on + strand, within ECD_04072
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,332,626 + +0.2 4,332,636 + +1.8 4,332,636 + +2.5 4,332,795 + ECD_04070 0.37 +1.7 4,332,822 + ECD_04070 0.43 +1.7 4,332,861 + ECD_04070 0.52 +1.6 4,332,861 + ECD_04070 0.52 +3.3 4,332,891 + ECD_04070 0.58 +1.4 4,332,891 + ECD_04070 0.58 +1.1 4,332,935 + ECD_04070 0.68 +2.7 4,333,097 + -0.3 4,333,131 - +0.7 4,333,131 - -0.6 4,333,154 - +0.1 4,333,156 + +0.2 4,333,157 - -0.9 4,333,157 - +0.7 4,333,159 - +0.4 4,333,170 - +0.0 4,333,170 - -0.2 4,333,173 + -0.8 4,333,174 - -0.2 4,333,174 - +0.2 4,333,174 - +0.1 4,333,197 + -0.0 4,333,197 + +0.3 4,333,384 - ECD_04071 0.16 +0.3 4,333,384 - ECD_04071 0.16 +0.3 4,333,425 + ECD_04071 0.19 -0.2 4,333,461 - ECD_04071 0.22 +1.0 4,333,499 + ECD_04071 0.25 -0.1 4,333,539 - ECD_04071 0.28 +0.1 4,333,547 + ECD_04071 0.29 -1.3 4,333,677 - ECD_04071 0.39 +0.2 4,333,817 + ECD_04071 0.50 +0.8 4,333,855 + ECD_04071 0.53 -0.3 4,333,973 + ECD_04071 0.62 -1.1 4,334,036 + ECD_04071 0.67 -0.8 4,334,148 - ECD_04071 0.76 -0.2 4,334,283 - ECD_04071 0.86 +1.3 4,334,367 - +0.3 4,334,371 - +0.2 4,334,371 - +0.6 4,334,371 - +1.1 4,334,413 - -0.2 4,334,776 + ECD_04072 0.11 +0.3 4,334,780 + ECD_04072 0.11 +1.6 4,334,781 - ECD_04072 0.11 -1.1 4,334,815 + ECD_04072 0.13 -1.0 4,334,815 + ECD_04072 0.13 -2.0 4,334,817 + ECD_04072 0.13 +0.8 4,334,817 + ECD_04072 0.13 +0.1 4,334,817 + ECD_04072 0.13 -0.4 4,334,817 + ECD_04072 0.13 -0.1 4,334,817 + ECD_04072 0.13 -0.3 4,334,817 + ECD_04072 0.13 -1.7 4,334,818 - ECD_04072 0.13 +1.2 4,334,872 + ECD_04072 0.16 -1.2 4,334,872 + ECD_04072 0.16 -0.3 4,335,073 + ECD_04072 0.25 +0.7 4,335,086 + ECD_04072 0.26 -0.3 4,335,088 + ECD_04072 0.26 +2.7 4,335,089 - ECD_04072 0.26 +1.0 4,335,119 + ECD_04072 0.27 -0.0 4,335,120 - ECD_04072 0.28 -0.2 4,335,121 + ECD_04072 0.28 -0.3 4,335,122 - ECD_04072 0.28 +2.4 4,335,133 + ECD_04072 0.28 -2.2 4,335,311 - ECD_04072 0.37 +0.8 4,335,320 - ECD_04072 0.37 -0.5 4,335,320 - ECD_04072 0.37 -0.6 4,335,370 + ECD_04072 0.40 +0.1 4,335,382 + ECD_04072 0.40 +0.6 4,335,382 + ECD_04072 0.40 -0.5 4,335,383 - ECD_04072 0.40 -0.2 4,335,450 + ECD_04072 0.43 +2.1
Or see this region's nucleotide sequence