Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04036 and ECD_04037 are separated by 9 nucleotides ECD_04037 and ECD_04038 overlap by 8 nucleotides
ECD_04036: ECD_04036 - N-acetylmuramoyl-l-alanine amidase II, at 4,302,585 to 4,303,922
_04036
ECD_04037: ECD_04037 - methyl-directed mismatch repair protein, at 4,303,932 to 4,305,779
_04037
ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722
_04038
Position (kb)
4303
4304
4305
4306 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4303.080 kb on - strand, within ECD_04036 at 4303.106 kb on + strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.154 kb on + strand, within ECD_04036 at 4303.160 kb on + strand, within ECD_04036 at 4303.293 kb on - strand, within ECD_04036 at 4303.325 kb on + strand, within ECD_04036 at 4303.325 kb on + strand, within ECD_04036 at 4303.358 kb on + strand, within ECD_04036 at 4303.358 kb on + strand, within ECD_04036 at 4303.359 kb on - strand, within ECD_04036 at 4303.559 kb on - strand, within ECD_04036 at 4303.603 kb on + strand, within ECD_04036 at 4303.608 kb on + strand, within ECD_04036 at 4303.608 kb on + strand, within ECD_04036 at 4303.608 kb on + strand, within ECD_04036 at 4303.615 kb on + strand, within ECD_04036 at 4303.616 kb on - strand, within ECD_04036 at 4303.625 kb on + strand, within ECD_04036 at 4303.657 kb on + strand, within ECD_04036 at 4303.657 kb on + strand, within ECD_04036 at 4303.657 kb on + strand, within ECD_04036 at 4303.658 kb on - strand, within ECD_04036 at 4303.658 kb on - strand, within ECD_04036 at 4303.661 kb on + strand, within ECD_04036 at 4303.662 kb on - strand, within ECD_04036 at 4303.740 kb on - strand, within ECD_04036 at 4303.810 kb on - strand at 4303.810 kb on - strand at 4303.887 kb on - strand at 4303.920 kb on + strand at 4303.949 kb on - strand at 4304.054 kb on + strand at 4304.055 kb on - strand at 4304.058 kb on + strand at 4304.301 kb on + strand, within ECD_04037 at 4304.301 kb on + strand, within ECD_04037 at 4304.332 kb on + strand, within ECD_04037 at 4304.385 kb on + strand, within ECD_04037 at 4304.385 kb on + strand, within ECD_04037 at 4304.386 kb on - strand, within ECD_04037 at 4304.435 kb on + strand, within ECD_04037 at 4304.567 kb on - strand, within ECD_04037 at 4304.695 kb on - strand, within ECD_04037 at 4304.700 kb on + strand, within ECD_04037 at 4304.802 kb on + strand, within ECD_04037 at 4304.803 kb on - strand, within ECD_04037 at 4304.894 kb on + strand, within ECD_04037 at 4304.898 kb on + strand, within ECD_04037 at 4304.899 kb on - strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.921 kb on - strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.251 kb on + strand, within ECD_04037 at 4305.305 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.560 kb on - strand, within ECD_04037 at 4305.691 kb on + strand at 4305.731 kb on - strand at 4305.878 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.984 kb on + strand, within ECD_04038 at 4306.710 kb on + strand at 4306.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,302,939 + ECD_04036 0.26 +0.1 4,302,939 + ECD_04036 0.26 +0.1 4,302,939 + ECD_04036 0.26 -2.3 4,302,939 + ECD_04036 0.26 -0.9 4,302,940 - ECD_04036 0.27 +0.7 4,302,940 - ECD_04036 0.27 -1.8 4,303,080 - ECD_04036 0.37 -0.5 4,303,106 + ECD_04036 0.39 -0.5 4,303,107 - ECD_04036 0.39 -2.5 4,303,107 - ECD_04036 0.39 -0.5 4,303,110 - ECD_04036 0.39 -0.4 4,303,110 - ECD_04036 0.39 -1.1 4,303,154 + ECD_04036 0.43 -1.0 4,303,160 + ECD_04036 0.43 -0.8 4,303,293 - ECD_04036 0.53 -2.5 4,303,325 + ECD_04036 0.55 -0.2 4,303,325 + ECD_04036 0.55 -1.1 4,303,358 + ECD_04036 0.58 -0.9 4,303,358 + ECD_04036 0.58 +0.2 4,303,359 - ECD_04036 0.58 -1.1 4,303,559 - ECD_04036 0.73 -0.1 4,303,603 + ECD_04036 0.76 +0.8 4,303,608 + ECD_04036 0.76 +0.4 4,303,608 + ECD_04036 0.76 -1.1 4,303,608 + ECD_04036 0.76 -0.0 4,303,615 + ECD_04036 0.77 +1.1 4,303,616 - ECD_04036 0.77 -1.8 4,303,625 + ECD_04036 0.78 -0.6 4,303,657 + ECD_04036 0.80 +0.2 4,303,657 + ECD_04036 0.80 -0.9 4,303,657 + ECD_04036 0.80 -0.7 4,303,658 - ECD_04036 0.80 -1.7 4,303,658 - ECD_04036 0.80 +0.3 4,303,661 + ECD_04036 0.80 +0.1 4,303,662 - ECD_04036 0.80 -1.0 4,303,740 - ECD_04036 0.86 -1.0 4,303,810 - +0.1 4,303,810 - -1.1 4,303,887 - -0.5 4,303,920 + +0.7 4,303,949 - -0.8 4,304,054 + -0.5 4,304,055 - -0.7 4,304,058 + +0.0 4,304,301 + ECD_04037 0.20 -0.9 4,304,301 + ECD_04037 0.20 +0.0 4,304,332 + ECD_04037 0.22 -1.2 4,304,385 + ECD_04037 0.25 +0.1 4,304,385 + ECD_04037 0.25 +0.7 4,304,386 - ECD_04037 0.25 -0.2 4,304,435 + ECD_04037 0.27 -0.7 4,304,567 - ECD_04037 0.34 +0.5 4,304,695 - ECD_04037 0.41 -0.2 4,304,700 + ECD_04037 0.42 +0.6 4,304,802 + ECD_04037 0.47 +0.6 4,304,803 - ECD_04037 0.47 +0.7 4,304,894 + ECD_04037 0.52 -1.2 4,304,898 + ECD_04037 0.52 +0.2 4,304,899 - ECD_04037 0.52 -0.8 4,304,920 + ECD_04037 0.53 -0.4 4,304,920 + ECD_04037 0.53 -1.2 4,304,921 - ECD_04037 0.54 -0.5 4,305,057 + ECD_04037 0.61 +2.7 4,305,057 + ECD_04037 0.61 +1.1 4,305,251 + ECD_04037 0.71 -0.6 4,305,305 - ECD_04037 0.74 -0.5 4,305,431 - ECD_04037 0.81 +0.2 4,305,431 - ECD_04037 0.81 -1.9 4,305,559 + ECD_04037 0.88 +0.1 4,305,559 + ECD_04037 0.88 +5.1 4,305,560 - ECD_04037 0.88 -0.2 4,305,691 + +0.5 4,305,731 - +0.5 4,305,878 + ECD_04038 0.11 +2.8 4,305,906 + ECD_04038 0.14 +4.9 4,305,906 + ECD_04038 0.14 +1.4 4,305,984 + ECD_04038 0.22 +1.5 4,306,710 + -0.4 4,306,741 + -0.1
Or see this region's nucleotide sequence