Strain Fitness in Escherichia coli BL21 around ECD_04037

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04036 and ECD_04037 are separated by 9 nucleotidesECD_04037 and ECD_04038 overlap by 8 nucleotides ECD_04036: ECD_04036 - N-acetylmuramoyl-l-alanine amidase II, at 4,302,585 to 4,303,922 _04036 ECD_04037: ECD_04037 - methyl-directed mismatch repair protein, at 4,303,932 to 4,305,779 _04037 ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722 _04038 Position (kb) 4303 4304 4305 4306Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4302.939 kb on + strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.939 kb on + strand, within ECD_04036at 4302.940 kb on - strand, within ECD_04036at 4302.940 kb on - strand, within ECD_04036at 4303.080 kb on - strand, within ECD_04036at 4303.106 kb on + strand, within ECD_04036at 4303.107 kb on - strand, within ECD_04036at 4303.107 kb on - strand, within ECD_04036at 4303.110 kb on - strand, within ECD_04036at 4303.110 kb on - strand, within ECD_04036at 4303.154 kb on + strand, within ECD_04036at 4303.160 kb on + strand, within ECD_04036at 4303.293 kb on - strand, within ECD_04036at 4303.325 kb on + strand, within ECD_04036at 4303.325 kb on + strand, within ECD_04036at 4303.358 kb on + strand, within ECD_04036at 4303.358 kb on + strand, within ECD_04036at 4303.359 kb on - strand, within ECD_04036at 4303.559 kb on - strand, within ECD_04036at 4303.603 kb on + strand, within ECD_04036at 4303.608 kb on + strand, within ECD_04036at 4303.608 kb on + strand, within ECD_04036at 4303.608 kb on + strand, within ECD_04036at 4303.615 kb on + strand, within ECD_04036at 4303.616 kb on - strand, within ECD_04036at 4303.625 kb on + strand, within ECD_04036at 4303.657 kb on + strand, within ECD_04036at 4303.657 kb on + strand, within ECD_04036at 4303.657 kb on + strand, within ECD_04036at 4303.658 kb on - strand, within ECD_04036at 4303.658 kb on - strand, within ECD_04036at 4303.661 kb on + strand, within ECD_04036at 4303.662 kb on - strand, within ECD_04036at 4303.740 kb on - strand, within ECD_04036at 4303.810 kb on - strandat 4303.810 kb on - strandat 4303.887 kb on - strandat 4303.920 kb on + strandat 4303.949 kb on - strandat 4304.054 kb on + strandat 4304.055 kb on - strandat 4304.058 kb on + strandat 4304.301 kb on + strand, within ECD_04037at 4304.301 kb on + strand, within ECD_04037at 4304.332 kb on + strand, within ECD_04037at 4304.385 kb on + strand, within ECD_04037at 4304.385 kb on + strand, within ECD_04037at 4304.386 kb on - strand, within ECD_04037at 4304.435 kb on + strand, within ECD_04037at 4304.567 kb on - strand, within ECD_04037at 4304.695 kb on - strand, within ECD_04037at 4304.700 kb on + strand, within ECD_04037at 4304.802 kb on + strand, within ECD_04037at 4304.803 kb on - strand, within ECD_04037at 4304.894 kb on + strand, within ECD_04037at 4304.898 kb on + strand, within ECD_04037at 4304.899 kb on - strand, within ECD_04037at 4304.920 kb on + strand, within ECD_04037at 4304.920 kb on + strand, within ECD_04037at 4304.921 kb on - strand, within ECD_04037at 4305.057 kb on + strand, within ECD_04037at 4305.057 kb on + strand, within ECD_04037at 4305.251 kb on + strand, within ECD_04037at 4305.305 kb on - strand, within ECD_04037at 4305.431 kb on - strand, within ECD_04037at 4305.431 kb on - strand, within ECD_04037at 4305.559 kb on + strand, within ECD_04037at 4305.559 kb on + strand, within ECD_04037at 4305.560 kb on - strand, within ECD_04037at 4305.691 kb on + strandat 4305.731 kb on - strandat 4305.878 kb on + strand, within ECD_04038at 4305.906 kb on + strand, within ECD_04038at 4305.906 kb on + strand, within ECD_04038at 4305.984 kb on + strand, within ECD_04038at 4306.710 kb on + strandat 4306.741 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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4,302,939 + ECD_04036 0.26 +0.1
4,302,939 + ECD_04036 0.26 +0.1
4,302,939 + ECD_04036 0.26 -2.3
4,302,939 + ECD_04036 0.26 -0.9
4,302,940 - ECD_04036 0.27 +0.7
4,302,940 - ECD_04036 0.27 -1.8
4,303,080 - ECD_04036 0.37 -0.5
4,303,106 + ECD_04036 0.39 -0.5
4,303,107 - ECD_04036 0.39 -2.5
4,303,107 - ECD_04036 0.39 -0.5
4,303,110 - ECD_04036 0.39 -0.4
4,303,110 - ECD_04036 0.39 -1.1
4,303,154 + ECD_04036 0.43 -1.0
4,303,160 + ECD_04036 0.43 -0.8
4,303,293 - ECD_04036 0.53 -2.5
4,303,325 + ECD_04036 0.55 -0.2
4,303,325 + ECD_04036 0.55 -1.1
4,303,358 + ECD_04036 0.58 -0.9
4,303,358 + ECD_04036 0.58 +0.2
4,303,359 - ECD_04036 0.58 -1.1
4,303,559 - ECD_04036 0.73 -0.1
4,303,603 + ECD_04036 0.76 +0.8
4,303,608 + ECD_04036 0.76 +0.4
4,303,608 + ECD_04036 0.76 -1.1
4,303,608 + ECD_04036 0.76 -0.0
4,303,615 + ECD_04036 0.77 +1.1
4,303,616 - ECD_04036 0.77 -1.8
4,303,625 + ECD_04036 0.78 -0.6
4,303,657 + ECD_04036 0.80 +0.2
4,303,657 + ECD_04036 0.80 -0.9
4,303,657 + ECD_04036 0.80 -0.7
4,303,658 - ECD_04036 0.80 -1.7
4,303,658 - ECD_04036 0.80 +0.3
4,303,661 + ECD_04036 0.80 +0.1
4,303,662 - ECD_04036 0.80 -1.0
4,303,740 - ECD_04036 0.86 -1.0
4,303,810 - +0.1
4,303,810 - -1.1
4,303,887 - -0.5
4,303,920 + +0.7
4,303,949 - -0.8
4,304,054 + -0.5
4,304,055 - -0.7
4,304,058 + +0.0
4,304,301 + ECD_04037 0.20 -0.9
4,304,301 + ECD_04037 0.20 +0.0
4,304,332 + ECD_04037 0.22 -1.2
4,304,385 + ECD_04037 0.25 +0.1
4,304,385 + ECD_04037 0.25 +0.7
4,304,386 - ECD_04037 0.25 -0.2
4,304,435 + ECD_04037 0.27 -0.7
4,304,567 - ECD_04037 0.34 +0.5
4,304,695 - ECD_04037 0.41 -0.2
4,304,700 + ECD_04037 0.42 +0.6
4,304,802 + ECD_04037 0.47 +0.6
4,304,803 - ECD_04037 0.47 +0.7
4,304,894 + ECD_04037 0.52 -1.2
4,304,898 + ECD_04037 0.52 +0.2
4,304,899 - ECD_04037 0.52 -0.8
4,304,920 + ECD_04037 0.53 -0.4
4,304,920 + ECD_04037 0.53 -1.2
4,304,921 - ECD_04037 0.54 -0.5
4,305,057 + ECD_04037 0.61 +2.7
4,305,057 + ECD_04037 0.61 +1.1
4,305,251 + ECD_04037 0.71 -0.6
4,305,305 - ECD_04037 0.74 -0.5
4,305,431 - ECD_04037 0.81 +0.2
4,305,431 - ECD_04037 0.81 -1.9
4,305,559 + ECD_04037 0.88 +0.1
4,305,559 + ECD_04037 0.88 +5.1
4,305,560 - ECD_04037 0.88 -0.2
4,305,691 + +0.5
4,305,731 - +0.5
4,305,878 + ECD_04038 0.11 +2.8
4,305,906 + ECD_04038 0.14 +4.9
4,305,906 + ECD_04038 0.14 +1.4
4,305,984 + ECD_04038 0.22 +1.5
4,306,710 + -0.4
4,306,741 + -0.1

Or see this region's nucleotide sequence