Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03994 and ECD_03995 are separated by 570 nucleotides
ECD_03994: ECD_03994 - C4-dicarboxylate transporter, anaerobic; DcuS co-sensor, at 4,254,484 to 4,255,824
_03994
ECD_03995: ECD_03995 - response regulator in two-component regulatory system with DcuS, at 4,256,395 to 4,257,114
_03995
Position (kb)
4256
4257
4258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4255.458 kb on + strand, within ECD_03994 at 4255.472 kb on + strand, within ECD_03994 at 4255.472 kb on + strand, within ECD_03994 at 4255.473 kb on - strand, within ECD_03994 at 4255.473 kb on - strand, within ECD_03994 at 4255.530 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.563 kb on - strand, within ECD_03994 at 4255.690 kb on - strand, within ECD_03994 at 4255.741 kb on + strand at 4255.745 kb on - strand at 4255.778 kb on + strand at 4255.790 kb on - strand at 4255.796 kb on - strand at 4255.951 kb on - strand at 4256.292 kb on + strand at 4256.522 kb on + strand, within ECD_03995 at 4256.527 kb on - strand, within ECD_03995 at 4256.623 kb on + strand, within ECD_03995 at 4256.692 kb on + strand, within ECD_03995 at 4256.718 kb on - strand, within ECD_03995 at 4256.720 kb on + strand, within ECD_03995 at 4256.915 kb on - strand, within ECD_03995 at 4256.940 kb on + strand, within ECD_03995 at 4256.942 kb on + strand, within ECD_03995 at 4256.942 kb on + strand, within ECD_03995 at 4256.942 kb on + strand, within ECD_03995 at 4256.946 kb on + strand, within ECD_03995 at 4257.052 kb on + strand at 4257.096 kb on + strand at 4257.100 kb on + strand at 4257.323 kb on + strand at 4257.324 kb on - strand at 4257.363 kb on + strand at 4257.503 kb on + strand at 4257.601 kb on + strand at 4257.625 kb on + strand at 4257.684 kb on - strand at 4257.724 kb on + strand at 4257.724 kb on + strand at 4257.758 kb on + strand at 4257.758 kb on + strand at 4257.763 kb on - strand at 4257.840 kb on + strand at 4257.840 kb on + strand at 4257.843 kb on + strand at 4257.855 kb on - strand at 4257.860 kb on + strand at 4257.917 kb on + strand at 4257.917 kb on + strand at 4257.918 kb on - strand at 4257.918 kb on - strand at 4257.979 kb on - strand at 4257.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,255,458 + ECD_03994 0.73 -0.0 4,255,472 + ECD_03994 0.74 +0.0 4,255,472 + ECD_03994 0.74 +2.0 4,255,473 - ECD_03994 0.74 -0.2 4,255,473 - ECD_03994 0.74 +0.3 4,255,530 + ECD_03994 0.78 -0.6 4,255,562 + ECD_03994 0.80 +1.0 4,255,562 + ECD_03994 0.80 +0.6 4,255,562 + ECD_03994 0.80 +1.4 4,255,563 - ECD_03994 0.80 +0.9 4,255,690 - ECD_03994 0.90 -0.6 4,255,741 + +0.4 4,255,745 - -0.3 4,255,778 + +0.2 4,255,790 - +0.7 4,255,796 - +1.5 4,255,951 - -0.6 4,256,292 + +0.7 4,256,522 + ECD_03995 0.18 +0.7 4,256,527 - ECD_03995 0.18 +0.8 4,256,623 + ECD_03995 0.32 +0.5 4,256,692 + ECD_03995 0.41 +0.6 4,256,718 - ECD_03995 0.45 +1.2 4,256,720 + ECD_03995 0.45 +0.6 4,256,915 - ECD_03995 0.72 +0.6 4,256,940 + ECD_03995 0.76 -1.8 4,256,942 + ECD_03995 0.76 -2.8 4,256,942 + ECD_03995 0.76 -1.0 4,256,942 + ECD_03995 0.76 -0.3 4,256,946 + ECD_03995 0.77 +0.0 4,257,052 + -0.1 4,257,096 + +0.3 4,257,100 + -0.2 4,257,323 + -0.1 4,257,324 - +0.1 4,257,363 + +0.0 4,257,503 + +0.8 4,257,601 + +0.2 4,257,625 + +0.0 4,257,684 - -0.4 4,257,724 + -0.1 4,257,724 + -0.5 4,257,758 + +0.0 4,257,758 + +0.3 4,257,763 - +0.1 4,257,840 + -0.6 4,257,840 + +1.9 4,257,843 + +0.5 4,257,855 - +0.9 4,257,860 + -1.0 4,257,917 + +0.2 4,257,917 + +2.6 4,257,918 - -0.2 4,257,918 - -2.2 4,257,979 - -0.7 4,257,979 - +1.3
Or see this region's nucleotide sequence