Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03907 and ECD_03908 are separated by 71 nucleotides ECD_03908 and ECD_03909 are separated by 242 nucleotides
ECD_03907: ECD_03907 - maltose ABC transporter ATPase, at 4,154,156 to 4,155,271
_03907
ECD_03908: ECD_03908 - maltose outer membrane porin (maltoporin), at 4,155,343 to 4,156,683
_03908
ECD_03909: ECD_03909 - maltose regulon periplasmic protein, at 4,156,926 to 4,157,846
_03909
Position (kb)
4155
4156
4157 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 4154.389 kb on + strand, within ECD_03907 at 4154.389 kb on + strand, within ECD_03907 at 4154.406 kb on - strand, within ECD_03907 at 4154.406 kb on - strand, within ECD_03907 at 4154.517 kb on + strand, within ECD_03907 at 4154.617 kb on - strand, within ECD_03907 at 4154.720 kb on + strand, within ECD_03907 at 4154.721 kb on - strand, within ECD_03907 at 4154.819 kb on + strand, within ECD_03907 at 4155.025 kb on - strand, within ECD_03907 at 4155.140 kb on + strand, within ECD_03907 at 4155.141 kb on - strand, within ECD_03907 at 4155.165 kb on + strand at 4155.339 kb on + strand at 4155.340 kb on - strand at 4155.395 kb on + strand at 4155.395 kb on + strand at 4155.493 kb on - strand, within ECD_03908 at 4155.507 kb on + strand, within ECD_03908 at 4155.507 kb on + strand, within ECD_03908 at 4155.508 kb on - strand, within ECD_03908 at 4155.538 kb on + strand, within ECD_03908 at 4155.539 kb on - strand, within ECD_03908 at 4155.592 kb on + strand, within ECD_03908 at 4155.603 kb on + strand, within ECD_03908 at 4155.604 kb on - strand, within ECD_03908 at 4155.604 kb on - strand, within ECD_03908 at 4155.613 kb on + strand, within ECD_03908 at 4155.613 kb on + strand, within ECD_03908 at 4155.726 kb on + strand, within ECD_03908 at 4155.727 kb on - strand, within ECD_03908 at 4155.736 kb on + strand, within ECD_03908 at 4155.757 kb on - strand, within ECD_03908 at 4155.757 kb on - strand, within ECD_03908 at 4155.771 kb on - strand, within ECD_03908 at 4155.894 kb on + strand, within ECD_03908 at 4155.894 kb on + strand, within ECD_03908 at 4155.895 kb on - strand, within ECD_03908 at 4155.895 kb on - strand, within ECD_03908 at 4155.895 kb on - strand, within ECD_03908 at 4155.895 kb on - strand, within ECD_03908 at 4155.898 kb on + strand, within ECD_03908 at 4155.898 kb on + strand, within ECD_03908 at 4155.898 kb on + strand, within ECD_03908 at 4155.899 kb on - strand, within ECD_03908 at 4155.899 kb on - strand, within ECD_03908 at 4155.905 kb on - strand, within ECD_03908 at 4155.977 kb on + strand, within ECD_03908 at 4155.977 kb on + strand, within ECD_03908 at 4155.977 kb on + strand, within ECD_03908 at 4155.978 kb on - strand, within ECD_03908 at 4155.978 kb on - strand, within ECD_03908 at 4156.022 kb on - strand, within ECD_03908 at 4156.074 kb on + strand, within ECD_03908 at 4156.117 kb on + strand, within ECD_03908 at 4156.279 kb on + strand, within ECD_03908 at 4156.279 kb on + strand, within ECD_03908 at 4156.279 kb on + strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.280 kb on - strand, within ECD_03908 at 4156.287 kb on + strand, within ECD_03908 at 4156.288 kb on - strand, within ECD_03908 at 4156.288 kb on - strand, within ECD_03908 at 4156.291 kb on + strand, within ECD_03908 at 4156.291 kb on + strand, within ECD_03908 at 4156.291 kb on + strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.292 kb on - strand, within ECD_03908 at 4156.357 kb on + strand, within ECD_03908 at 4156.358 kb on - strand, within ECD_03908 at 4156.522 kb on + strand, within ECD_03908 at 4156.555 kb on + strand at 4156.556 kb on - strand at 4156.572 kb on + strand at 4156.573 kb on - strand at 4156.681 kb on + strand at 4156.684 kb on + strand at 4156.758 kb on + strand at 4156.767 kb on + strand at 4156.768 kb on - strand at 4156.768 kb on - strand at 4156.804 kb on - strand at 4156.994 kb on + strand at 4157.009 kb on + strand at 4157.010 kb on - strand at 4157.010 kb on - strand at 4157.010 kb on - strand at 4157.013 kb on + strand at 4157.013 kb on + strand at 4157.013 kb on + strand at 4157.014 kb on - strand at 4157.014 kb on - strand at 4157.014 kb on - strand at 4157.172 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.466 kb on + strand, within ECD_03909 at 4157.522 kb on + strand, within ECD_03909 at 4157.522 kb on + strand, within ECD_03909 at 4157.581 kb on + strand, within ECD_03909 at 4157.590 kb on + strand, within ECD_03909 at 4157.591 kb on - strand, within ECD_03909
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,154,389 + ECD_03907 0.21 +6.2 4,154,389 + ECD_03907 0.21 +5.9 4,154,406 - ECD_03907 0.22 +6.5 4,154,406 - ECD_03907 0.22 +5.8 4,154,517 + ECD_03907 0.32 +3.9 4,154,617 - ECD_03907 0.41 +4.2 4,154,720 + ECD_03907 0.51 -0.6 4,154,721 - ECD_03907 0.51 +6.1 4,154,819 + ECD_03907 0.59 +0.2 4,155,025 - ECD_03907 0.78 +6.5 4,155,140 + ECD_03907 0.88 -0.2 4,155,141 - ECD_03907 0.88 +6.3 4,155,165 + -0.0 4,155,339 + +6.6 4,155,340 - +6.3 4,155,395 + +6.8 4,155,395 + +6.4 4,155,493 - ECD_03908 0.11 +6.9 4,155,507 + ECD_03908 0.12 +6.3 4,155,507 + ECD_03908 0.12 +6.6 4,155,508 - ECD_03908 0.12 +6.6 4,155,538 + ECD_03908 0.15 +6.2 4,155,539 - ECD_03908 0.15 +6.9 4,155,592 + ECD_03908 0.19 +6.7 4,155,603 + ECD_03908 0.19 +6.4 4,155,604 - ECD_03908 0.19 +6.5 4,155,604 - ECD_03908 0.19 +6.7 4,155,613 + ECD_03908 0.20 +6.1 4,155,613 + ECD_03908 0.20 +6.5 4,155,726 + ECD_03908 0.29 +6.0 4,155,727 - ECD_03908 0.29 +7.1 4,155,736 + ECD_03908 0.29 +6.5 4,155,757 - ECD_03908 0.31 +6.2 4,155,757 - ECD_03908 0.31 +6.2 4,155,771 - ECD_03908 0.32 +6.7 4,155,894 + ECD_03908 0.41 +6.5 4,155,894 + ECD_03908 0.41 +6.3 4,155,895 - ECD_03908 0.41 +6.0 4,155,895 - ECD_03908 0.41 +7.5 4,155,895 - ECD_03908 0.41 +7.0 4,155,895 - ECD_03908 0.41 +6.3 4,155,898 + ECD_03908 0.41 +6.3 4,155,898 + ECD_03908 0.41 +5.8 4,155,898 + ECD_03908 0.41 +6.4 4,155,899 - ECD_03908 0.41 +6.5 4,155,899 - ECD_03908 0.41 +6.8 4,155,905 - ECD_03908 0.42 +5.9 4,155,977 + ECD_03908 0.47 +6.7 4,155,977 + ECD_03908 0.47 +6.5 4,155,977 + ECD_03908 0.47 +6.4 4,155,978 - ECD_03908 0.47 +7.0 4,155,978 - ECD_03908 0.47 +6.4 4,156,022 - ECD_03908 0.51 +6.1 4,156,074 + ECD_03908 0.55 +6.4 4,156,117 + ECD_03908 0.58 +6.5 4,156,279 + ECD_03908 0.70 +6.2 4,156,279 + ECD_03908 0.70 +6.9 4,156,279 + ECD_03908 0.70 +6.7 4,156,280 - ECD_03908 0.70 +7.0 4,156,280 - ECD_03908 0.70 +5.8 4,156,280 - ECD_03908 0.70 +6.3 4,156,280 - ECD_03908 0.70 +7.4 4,156,280 - ECD_03908 0.70 +6.1 4,156,280 - ECD_03908 0.70 +6.8 4,156,287 + ECD_03908 0.70 +6.5 4,156,288 - ECD_03908 0.70 +6.7 4,156,288 - ECD_03908 0.70 +6.6 4,156,291 + ECD_03908 0.71 +6.9 4,156,291 + ECD_03908 0.71 +6.7 4,156,291 + ECD_03908 0.71 +6.6 4,156,292 - ECD_03908 0.71 +6.9 4,156,292 - ECD_03908 0.71 +8.3 4,156,292 - ECD_03908 0.71 +6.8 4,156,292 - ECD_03908 0.71 +6.7 4,156,357 + ECD_03908 0.76 +7.2 4,156,358 - ECD_03908 0.76 +7.0 4,156,522 + ECD_03908 0.88 +6.9 4,156,555 + +6.9 4,156,556 - +6.7 4,156,572 + +7.0 4,156,573 - +6.5 4,156,681 + +4.4 4,156,684 + +3.7 4,156,758 + +0.9 4,156,767 + -2.1 4,156,768 - +1.4 4,156,768 - -0.8 4,156,804 - +1.6 4,156,994 + +0.6 4,157,009 + +1.6 4,157,010 - +0.3 4,157,010 - +1.9 4,157,010 - +0.5 4,157,013 + +1.3 4,157,013 + +0.6 4,157,013 + +2.3 4,157,014 - +0.6 4,157,014 - +0.6 4,157,014 - +0.9 4,157,172 + ECD_03909 0.27 -0.7 4,157,466 + ECD_03909 0.59 +1.6 4,157,466 + ECD_03909 0.59 +0.5 4,157,466 + ECD_03909 0.59 +0.3 4,157,522 + ECD_03909 0.65 -0.2 4,157,522 + ECD_03909 0.65 +1.2 4,157,581 + ECD_03909 0.71 +0.2 4,157,590 + ECD_03909 0.72 +0.9 4,157,591 - ECD_03909 0.72 +1.8
Or see this region's nucleotide sequence