Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03885 and ECD_03886 are separated by 268 nucleotides ECD_03886 and ECD_03887 are separated by 29 nucleotides
ECD_03885: ECD_03885 - homoserine O-transsuccinylase, at 4,122,165 to 4,123,094
_03885
ECD_03886: ECD_03886 - malate synthase A, at 4,123,363 to 4,124,964
_03886
ECD_03887: ECD_03887 - isocitrate lyase, at 4,124,994 to 4,126,298
_03887
Position (kb)
4123
4124
4125 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4122.434 kb on + strand, within ECD_03885 at 4122.446 kb on + strand, within ECD_03885 at 4122.677 kb on + strand, within ECD_03885 at 4122.677 kb on + strand, within ECD_03885 at 4122.778 kb on - strand, within ECD_03885 at 4122.823 kb on - strand, within ECD_03885 at 4122.823 kb on - strand, within ECD_03885 at 4122.837 kb on - strand, within ECD_03885 at 4122.877 kb on - strand, within ECD_03885 at 4122.946 kb on - strand, within ECD_03885 at 4122.946 kb on - strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.951 kb on + strand, within ECD_03885 at 4122.977 kb on + strand, within ECD_03885 at 4123.035 kb on + strand at 4123.039 kb on - strand at 4123.059 kb on + strand at 4123.092 kb on + strand at 4123.133 kb on + strand at 4123.134 kb on - strand at 4123.411 kb on + strand at 4123.412 kb on - strand at 4123.623 kb on - strand, within ECD_03886 at 4123.643 kb on + strand, within ECD_03886 at 4123.803 kb on + strand, within ECD_03886 at 4123.804 kb on - strand, within ECD_03886 at 4123.991 kb on - strand, within ECD_03886 at 4123.997 kb on - strand, within ECD_03886 at 4124.053 kb on + strand, within ECD_03886 at 4124.054 kb on - strand, within ECD_03886 at 4124.054 kb on - strand, within ECD_03886 at 4124.166 kb on + strand, within ECD_03886 at 4124.167 kb on - strand, within ECD_03886 at 4124.197 kb on + strand, within ECD_03886 at 4124.197 kb on + strand, within ECD_03886 at 4124.198 kb on - strand, within ECD_03886 at 4124.209 kb on + strand, within ECD_03886 at 4124.209 kb on + strand, within ECD_03886 at 4124.310 kb on + strand, within ECD_03886 at 4124.408 kb on + strand, within ECD_03886 at 4124.408 kb on + strand, within ECD_03886 at 4124.613 kb on + strand, within ECD_03886 at 4124.613 kb on + strand, within ECD_03886 at 4124.614 kb on - strand, within ECD_03886 at 4124.687 kb on - strand, within ECD_03886 at 4124.921 kb on + strand at 4124.922 kb on - strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.974 kb on + strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.975 kb on - strand at 4124.978 kb on + strand at 4124.979 kb on - strand at 4125.005 kb on + strand at 4125.062 kb on + strand at 4125.062 kb on + strand at 4125.063 kb on - strand at 4125.072 kb on + strand at 4125.187 kb on - strand, within ECD_03887 at 4125.187 kb on - strand, within ECD_03887 at 4125.258 kb on + strand, within ECD_03887 at 4125.258 kb on + strand, within ECD_03887 at 4125.259 kb on - strand, within ECD_03887 at 4125.433 kb on - strand, within ECD_03887 at 4125.441 kb on + strand, within ECD_03887 at 4125.441 kb on + strand, within ECD_03887 at 4125.441 kb on + strand, within ECD_03887 at 4125.601 kb on + strand, within ECD_03887 at 4125.716 kb on + strand, within ECD_03887 at 4125.735 kb on + strand, within ECD_03887 at 4125.750 kb on - strand, within ECD_03887 at 4125.837 kb on + strand, within ECD_03887 at 4125.939 kb on + strand, within ECD_03887 at 4125.939 kb on + strand, within ECD_03887 at 4125.939 kb on + strand, within ECD_03887 at 4125.939 kb on + strand, within ECD_03887 at 4125.940 kb on - strand, within ECD_03887 at 4125.941 kb on + strand, within ECD_03887 at 4125.941 kb on + strand, within ECD_03887
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,122,434 + ECD_03885 0.29 +0.1 4,122,446 + ECD_03885 0.30 +1.3 4,122,677 + ECD_03885 0.55 -0.7 4,122,677 + ECD_03885 0.55 -0.0 4,122,778 - ECD_03885 0.66 -0.2 4,122,823 - ECD_03885 0.71 -0.3 4,122,823 - ECD_03885 0.71 +2.3 4,122,837 - ECD_03885 0.72 +0.7 4,122,877 - ECD_03885 0.77 -1.3 4,122,946 - ECD_03885 0.84 -0.1 4,122,946 - ECD_03885 0.84 -0.5 4,122,951 + ECD_03885 0.85 +0.5 4,122,951 + ECD_03885 0.85 +0.2 4,122,951 + ECD_03885 0.85 +1.0 4,122,951 + ECD_03885 0.85 +1.3 4,122,977 + ECD_03885 0.87 +0.5 4,123,035 + +0.7 4,123,039 - +1.0 4,123,059 + +0.4 4,123,092 + -0.1 4,123,133 + +0.6 4,123,134 - -1.1 4,123,411 + +2.0 4,123,412 - +1.5 4,123,623 - ECD_03886 0.16 -0.5 4,123,643 + ECD_03886 0.17 +0.2 4,123,803 + ECD_03886 0.27 +0.1 4,123,804 - ECD_03886 0.28 +0.4 4,123,991 - ECD_03886 0.39 +1.5 4,123,997 - ECD_03886 0.40 +0.9 4,124,053 + ECD_03886 0.43 -0.1 4,124,054 - ECD_03886 0.43 +0.8 4,124,054 - ECD_03886 0.43 +1.1 4,124,166 + ECD_03886 0.50 -0.5 4,124,167 - ECD_03886 0.50 -0.2 4,124,197 + ECD_03886 0.52 -1.1 4,124,197 + ECD_03886 0.52 +0.2 4,124,198 - ECD_03886 0.52 +0.5 4,124,209 + ECD_03886 0.53 -1.8 4,124,209 + ECD_03886 0.53 +0.3 4,124,310 + ECD_03886 0.59 -0.6 4,124,408 + ECD_03886 0.65 +1.8 4,124,408 + ECD_03886 0.65 -1.5 4,124,613 + ECD_03886 0.78 -1.5 4,124,613 + ECD_03886 0.78 +0.1 4,124,614 - ECD_03886 0.78 +1.5 4,124,687 - ECD_03886 0.83 +0.5 4,124,921 + +1.6 4,124,922 - +0.6 4,124,974 + +0.7 4,124,974 + -1.2 4,124,974 + -1.0 4,124,974 + +0.3 4,124,974 + -0.1 4,124,974 + -0.7 4,124,974 + -1.2 4,124,974 + -0.2 4,124,974 + -0.8 4,124,974 + +0.1 4,124,974 + -0.8 4,124,975 - +2.3 4,124,975 - +0.5 4,124,975 - -1.1 4,124,975 - +1.2 4,124,975 - +0.7 4,124,975 - +0.3 4,124,975 - -1.5 4,124,975 - +0.7 4,124,978 + -0.8 4,124,979 - +1.3 4,125,005 + +0.4 4,125,062 + -0.1 4,125,062 + +0.6 4,125,063 - +0.2 4,125,072 + -0.3 4,125,187 - ECD_03887 0.15 +0.4 4,125,187 - ECD_03887 0.15 -0.5 4,125,258 + ECD_03887 0.20 +0.3 4,125,258 + ECD_03887 0.20 +1.2 4,125,259 - ECD_03887 0.20 -1.2 4,125,433 - ECD_03887 0.34 -0.3 4,125,441 + ECD_03887 0.34 +0.4 4,125,441 + ECD_03887 0.34 -0.3 4,125,441 + ECD_03887 0.34 -1.2 4,125,601 + ECD_03887 0.47 -0.5 4,125,716 + ECD_03887 0.55 +0.4 4,125,735 + ECD_03887 0.57 -0.5 4,125,750 - ECD_03887 0.58 -0.0 4,125,837 + ECD_03887 0.65 -0.1 4,125,939 + ECD_03887 0.72 -0.4 4,125,939 + ECD_03887 0.72 +0.5 4,125,939 + ECD_03887 0.72 -0.3 4,125,939 + ECD_03887 0.72 +0.6 4,125,940 - ECD_03887 0.72 -0.1 4,125,941 + ECD_03887 0.73 +0.7 4,125,941 + ECD_03887 0.73 -0.5
Or see this region's nucleotide sequence