Strain Fitness in Escherichia coli BL21 around ECD_03886

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03885 and ECD_03886 are separated by 268 nucleotidesECD_03886 and ECD_03887 are separated by 29 nucleotides ECD_03885: ECD_03885 - homoserine O-transsuccinylase, at 4,122,165 to 4,123,094 _03885 ECD_03886: ECD_03886 - malate synthase A, at 4,123,363 to 4,124,964 _03886 ECD_03887: ECD_03887 - isocitrate lyase, at 4,124,994 to 4,126,298 _03887 Position (kb) 4123 4124 4125Strain fitness (log2 ratio) -2 -1 0 1 2at 4122.434 kb on + strand, within ECD_03885at 4122.446 kb on + strand, within ECD_03885at 4122.677 kb on + strand, within ECD_03885at 4122.677 kb on + strand, within ECD_03885at 4122.778 kb on - strand, within ECD_03885at 4122.823 kb on - strand, within ECD_03885at 4122.823 kb on - strand, within ECD_03885at 4122.837 kb on - strand, within ECD_03885at 4122.877 kb on - strand, within ECD_03885at 4122.946 kb on - strand, within ECD_03885at 4122.946 kb on - strand, within ECD_03885at 4122.951 kb on + strand, within ECD_03885at 4122.951 kb on + strand, within ECD_03885at 4122.951 kb on + strand, within ECD_03885at 4122.951 kb on + strand, within ECD_03885at 4122.977 kb on + strand, within ECD_03885at 4123.035 kb on + strandat 4123.039 kb on - strandat 4123.059 kb on + strandat 4123.092 kb on + strandat 4123.133 kb on + strandat 4123.134 kb on - strandat 4123.411 kb on + strandat 4123.412 kb on - strandat 4123.623 kb on - strand, within ECD_03886at 4123.643 kb on + strand, within ECD_03886at 4123.803 kb on + strand, within ECD_03886at 4123.804 kb on - strand, within ECD_03886at 4123.991 kb on - strand, within ECD_03886at 4123.997 kb on - strand, within ECD_03886at 4124.053 kb on + strand, within ECD_03886at 4124.054 kb on - strand, within ECD_03886at 4124.054 kb on - strand, within ECD_03886at 4124.166 kb on + strand, within ECD_03886at 4124.167 kb on - strand, within ECD_03886at 4124.197 kb on + strand, within ECD_03886at 4124.197 kb on + strand, within ECD_03886at 4124.198 kb on - strand, within ECD_03886at 4124.209 kb on + strand, within ECD_03886at 4124.209 kb on + strand, within ECD_03886at 4124.310 kb on + strand, within ECD_03886at 4124.408 kb on + strand, within ECD_03886at 4124.408 kb on + strand, within ECD_03886at 4124.613 kb on + strand, within ECD_03886at 4124.613 kb on + strand, within ECD_03886at 4124.614 kb on - strand, within ECD_03886at 4124.687 kb on - strand, within ECD_03886at 4124.921 kb on + strandat 4124.922 kb on - strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.974 kb on + strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.975 kb on - strandat 4124.978 kb on + strandat 4124.979 kb on - strandat 4125.005 kb on + strandat 4125.062 kb on + strandat 4125.062 kb on + strandat 4125.063 kb on - strandat 4125.072 kb on + strandat 4125.187 kb on - strand, within ECD_03887at 4125.187 kb on - strand, within ECD_03887at 4125.258 kb on + strand, within ECD_03887at 4125.258 kb on + strand, within ECD_03887at 4125.259 kb on - strand, within ECD_03887at 4125.433 kb on - strand, within ECD_03887at 4125.441 kb on + strand, within ECD_03887at 4125.441 kb on + strand, within ECD_03887at 4125.441 kb on + strand, within ECD_03887at 4125.601 kb on + strand, within ECD_03887at 4125.716 kb on + strand, within ECD_03887at 4125.735 kb on + strand, within ECD_03887at 4125.750 kb on - strand, within ECD_03887at 4125.837 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.939 kb on + strand, within ECD_03887at 4125.940 kb on - strand, within ECD_03887at 4125.941 kb on + strand, within ECD_03887at 4125.941 kb on + strand, within ECD_03887

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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4,122,434 + ECD_03885 0.29 +0.1
4,122,446 + ECD_03885 0.30 +1.3
4,122,677 + ECD_03885 0.55 -0.7
4,122,677 + ECD_03885 0.55 -0.0
4,122,778 - ECD_03885 0.66 -0.2
4,122,823 - ECD_03885 0.71 -0.3
4,122,823 - ECD_03885 0.71 +2.3
4,122,837 - ECD_03885 0.72 +0.7
4,122,877 - ECD_03885 0.77 -1.3
4,122,946 - ECD_03885 0.84 -0.1
4,122,946 - ECD_03885 0.84 -0.5
4,122,951 + ECD_03885 0.85 +0.5
4,122,951 + ECD_03885 0.85 +0.2
4,122,951 + ECD_03885 0.85 +1.0
4,122,951 + ECD_03885 0.85 +1.3
4,122,977 + ECD_03885 0.87 +0.5
4,123,035 + +0.7
4,123,039 - +1.0
4,123,059 + +0.4
4,123,092 + -0.1
4,123,133 + +0.6
4,123,134 - -1.1
4,123,411 + +2.0
4,123,412 - +1.5
4,123,623 - ECD_03886 0.16 -0.5
4,123,643 + ECD_03886 0.17 +0.2
4,123,803 + ECD_03886 0.27 +0.1
4,123,804 - ECD_03886 0.28 +0.4
4,123,991 - ECD_03886 0.39 +1.5
4,123,997 - ECD_03886 0.40 +0.9
4,124,053 + ECD_03886 0.43 -0.1
4,124,054 - ECD_03886 0.43 +0.8
4,124,054 - ECD_03886 0.43 +1.1
4,124,166 + ECD_03886 0.50 -0.5
4,124,167 - ECD_03886 0.50 -0.2
4,124,197 + ECD_03886 0.52 -1.1
4,124,197 + ECD_03886 0.52 +0.2
4,124,198 - ECD_03886 0.52 +0.5
4,124,209 + ECD_03886 0.53 -1.8
4,124,209 + ECD_03886 0.53 +0.3
4,124,310 + ECD_03886 0.59 -0.6
4,124,408 + ECD_03886 0.65 +1.8
4,124,408 + ECD_03886 0.65 -1.5
4,124,613 + ECD_03886 0.78 -1.5
4,124,613 + ECD_03886 0.78 +0.1
4,124,614 - ECD_03886 0.78 +1.5
4,124,687 - ECD_03886 0.83 +0.5
4,124,921 + +1.6
4,124,922 - +0.6
4,124,974 + +0.7
4,124,974 + -1.2
4,124,974 + -1.0
4,124,974 + +0.3
4,124,974 + -0.1
4,124,974 + -0.7
4,124,974 + -1.2
4,124,974 + -0.2
4,124,974 + -0.8
4,124,974 + +0.1
4,124,974 + -0.8
4,124,975 - +2.3
4,124,975 - +0.5
4,124,975 - -1.1
4,124,975 - +1.2
4,124,975 - +0.7
4,124,975 - +0.3
4,124,975 - -1.5
4,124,975 - +0.7
4,124,978 + -0.8
4,124,979 - +1.3
4,125,005 + +0.4
4,125,062 + -0.1
4,125,062 + +0.6
4,125,063 - +0.2
4,125,072 + -0.3
4,125,187 - ECD_03887 0.15 +0.4
4,125,187 - ECD_03887 0.15 -0.5
4,125,258 + ECD_03887 0.20 +0.3
4,125,258 + ECD_03887 0.20 +1.2
4,125,259 - ECD_03887 0.20 -1.2
4,125,433 - ECD_03887 0.34 -0.3
4,125,441 + ECD_03887 0.34 +0.4
4,125,441 + ECD_03887 0.34 -0.3
4,125,441 + ECD_03887 0.34 -1.2
4,125,601 + ECD_03887 0.47 -0.5
4,125,716 + ECD_03887 0.55 +0.4
4,125,735 + ECD_03887 0.57 -0.5
4,125,750 - ECD_03887 0.58 -0.0
4,125,837 + ECD_03887 0.65 -0.1
4,125,939 + ECD_03887 0.72 -0.4
4,125,939 + ECD_03887 0.72 +0.5
4,125,939 + ECD_03887 0.72 -0.3
4,125,939 + ECD_03887 0.72 +0.6
4,125,940 - ECD_03887 0.72 -0.1
4,125,941 + ECD_03887 0.73 +0.7
4,125,941 + ECD_03887 0.73 -0.5

Or see this region's nucleotide sequence