Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03878 and ECD_03879 are separated by 1 nucleotides ECD_03879 and ECD_03880 are separated by 237 nucleotides ECD_03880 and ECD_03881 overlap by 4 nucleotides
ECD_03878: ECD_03878 - DUF1481 family putative lipoprotein, at 4,108,618 to 4,109,313
_03878
ECD_03879: ECD_03879 - Zn-dependent periplasmic chaperone, at 4,109,315 to 4,109,734
_03879
ECD_03880: ECD_03880 - sensory histidine kinase in two-component regulatory system with ZraR, at 4,109,972 to 4,111,348
_03880
ECD_03881: ECD_03881 - fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein, at 4,111,345 to 4,112,670
_03881
Position (kb)
4109
4110
4111
4112 Strain fitness (log2 ratio)
-2
-1
0
1 at 4109.021 kb on + strand, within ECD_03878 at 4109.021 kb on + strand, within ECD_03878 at 4109.022 kb on - strand, within ECD_03878 at 4109.022 kb on - strand, within ECD_03878 at 4109.023 kb on + strand, within ECD_03878 at 4109.056 kb on - strand, within ECD_03878 at 4109.066 kb on + strand, within ECD_03878 at 4109.067 kb on - strand, within ECD_03878 at 4109.255 kb on + strand at 4109.255 kb on + strand at 4109.256 kb on - strand at 4109.316 kb on + strand at 4109.316 kb on + strand at 4109.408 kb on - strand, within ECD_03879 at 4109.423 kb on + strand, within ECD_03879 at 4109.433 kb on - strand, within ECD_03879 at 4109.517 kb on + strand, within ECD_03879 at 4109.517 kb on + strand, within ECD_03879 at 4109.518 kb on - strand, within ECD_03879 at 4109.518 kb on - strand, within ECD_03879 at 4109.518 kb on - strand, within ECD_03879 at 4109.569 kb on - strand, within ECD_03879 at 4109.641 kb on + strand, within ECD_03879 at 4109.641 kb on + strand, within ECD_03879 at 4109.642 kb on - strand, within ECD_03879 at 4109.642 kb on - strand, within ECD_03879 at 4109.642 kb on - strand, within ECD_03879 at 4109.759 kb on - strand at 4109.980 kb on + strand at 4109.980 kb on + strand at 4109.981 kb on - strand at 4109.992 kb on + strand at 4109.992 kb on + strand at 4109.992 kb on + strand at 4109.993 kb on - strand at 4110.003 kb on + strand at 4110.003 kb on + strand at 4110.007 kb on + strand at 4110.008 kb on - strand at 4110.008 kb on - strand at 4110.135 kb on + strand, within ECD_03880 at 4110.135 kb on + strand, within ECD_03880 at 4110.136 kb on - strand, within ECD_03880 at 4110.136 kb on - strand, within ECD_03880 at 4110.136 kb on - strand, within ECD_03880 at 4110.140 kb on - strand, within ECD_03880 at 4110.241 kb on - strand, within ECD_03880 at 4110.286 kb on + strand, within ECD_03880 at 4110.286 kb on + strand, within ECD_03880 at 4110.286 kb on + strand, within ECD_03880 at 4110.287 kb on - strand, within ECD_03880 at 4110.287 kb on - strand, within ECD_03880 at 4110.287 kb on - strand, within ECD_03880 at 4110.317 kb on + strand, within ECD_03880 at 4110.343 kb on - strand, within ECD_03880 at 4110.343 kb on - strand, within ECD_03880 at 4110.343 kb on - strand, within ECD_03880 at 4110.410 kb on + strand, within ECD_03880 at 4110.460 kb on + strand, within ECD_03880 at 4110.461 kb on - strand, within ECD_03880 at 4110.471 kb on - strand, within ECD_03880 at 4110.471 kb on - strand, within ECD_03880 at 4110.514 kb on + strand, within ECD_03880 at 4110.559 kb on + strand, within ECD_03880 at 4110.560 kb on - strand, within ECD_03880 at 4110.614 kb on + strand, within ECD_03880 at 4110.739 kb on + strand, within ECD_03880 at 4110.740 kb on - strand, within ECD_03880 at 4110.755 kb on + strand, within ECD_03880 at 4110.755 kb on + strand, within ECD_03880 at 4110.755 kb on + strand, within ECD_03880 at 4110.924 kb on + strand, within ECD_03880 at 4110.925 kb on - strand, within ECD_03880 at 4110.934 kb on - strand, within ECD_03880 at 4111.044 kb on - strand, within ECD_03880 at 4111.055 kb on - strand, within ECD_03880 at 4111.055 kb on - strand, within ECD_03880 at 4111.085 kb on - strand, within ECD_03880 at 4111.234 kb on + strand at 4111.235 kb on - strand at 4111.258 kb on + strand at 4111.258 kb on + strand at 4111.259 kb on - strand at 4111.259 kb on - strand at 4111.259 kb on - strand at 4111.324 kb on + strand at 4111.401 kb on + strand at 4111.416 kb on - strand at 4111.416 kb on - strand at 4111.433 kb on - strand at 4111.434 kb on + strand at 4111.590 kb on + strand, within ECD_03881 at 4111.623 kb on - strand, within ECD_03881 at 4111.652 kb on - strand, within ECD_03881 at 4111.682 kb on + strand, within ECD_03881 at 4111.713 kb on + strand, within ECD_03881 at 4111.713 kb on + strand, within ECD_03881 at 4111.714 kb on - strand, within ECD_03881 at 4111.714 kb on - strand, within ECD_03881 at 4111.722 kb on + strand, within ECD_03881 at 4111.722 kb on + strand, within ECD_03881 at 4111.723 kb on - strand, within ECD_03881 at 4112.077 kb on - strand, within ECD_03881 at 4112.154 kb on + strand, within ECD_03881 at 4112.299 kb on - strand, within ECD_03881 at 4112.344 kb on - strand, within ECD_03881
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 4,109,021 + ECD_03878 0.58 -0.6 4,109,021 + ECD_03878 0.58 -0.5 4,109,022 - ECD_03878 0.58 +0.3 4,109,022 - ECD_03878 0.58 -0.8 4,109,023 + ECD_03878 0.58 -2.2 4,109,056 - ECD_03878 0.63 -1.3 4,109,066 + ECD_03878 0.64 +1.0 4,109,067 - ECD_03878 0.65 -1.7 4,109,255 + -1.3 4,109,255 + +0.3 4,109,256 - -0.3 4,109,316 + -0.5 4,109,316 + -0.5 4,109,408 - ECD_03879 0.22 -1.2 4,109,423 + ECD_03879 0.26 -0.0 4,109,433 - ECD_03879 0.28 -1.4 4,109,517 + ECD_03879 0.48 +0.7 4,109,517 + ECD_03879 0.48 +0.8 4,109,518 - ECD_03879 0.48 -1.3 4,109,518 - ECD_03879 0.48 -1.6 4,109,518 - ECD_03879 0.48 +0.1 4,109,569 - ECD_03879 0.60 -1.7 4,109,641 + ECD_03879 0.78 +0.6 4,109,641 + ECD_03879 0.78 -0.1 4,109,642 - ECD_03879 0.78 +1.4 4,109,642 - ECD_03879 0.78 -1.0 4,109,642 - ECD_03879 0.78 -0.9 4,109,759 - -1.2 4,109,980 + -0.1 4,109,980 + -0.4 4,109,981 - -0.2 4,109,992 + -0.8 4,109,992 + -1.1 4,109,992 + +1.4 4,109,993 - -1.6 4,110,003 + +0.6 4,110,003 + -1.0 4,110,007 + -0.2 4,110,008 - -0.6 4,110,008 - +0.8 4,110,135 + ECD_03880 0.12 -0.6 4,110,135 + ECD_03880 0.12 -0.1 4,110,136 - ECD_03880 0.12 -0.7 4,110,136 - ECD_03880 0.12 -0.1 4,110,136 - ECD_03880 0.12 -0.1 4,110,140 - ECD_03880 0.12 +0.5 4,110,241 - ECD_03880 0.20 -1.0 4,110,286 + ECD_03880 0.23 -0.6 4,110,286 + ECD_03880 0.23 -2.3 4,110,286 + ECD_03880 0.23 -1.1 4,110,287 - ECD_03880 0.23 +1.4 4,110,287 - ECD_03880 0.23 +1.4 4,110,287 - ECD_03880 0.23 -0.6 4,110,317 + ECD_03880 0.25 -0.5 4,110,343 - ECD_03880 0.27 +0.7 4,110,343 - ECD_03880 0.27 -0.8 4,110,343 - ECD_03880 0.27 +0.0 4,110,410 + ECD_03880 0.32 -0.5 4,110,460 + ECD_03880 0.35 +1.7 4,110,461 - ECD_03880 0.36 +0.3 4,110,471 - ECD_03880 0.36 -0.5 4,110,471 - ECD_03880 0.36 +0.7 4,110,514 + ECD_03880 0.39 -1.5 4,110,559 + ECD_03880 0.43 +0.6 4,110,560 - ECD_03880 0.43 -1.3 4,110,614 + ECD_03880 0.47 -0.3 4,110,739 + ECD_03880 0.56 +0.3 4,110,740 - ECD_03880 0.56 -0.7 4,110,755 + ECD_03880 0.57 -0.6 4,110,755 + ECD_03880 0.57 +0.3 4,110,755 + ECD_03880 0.57 -0.5 4,110,924 + ECD_03880 0.69 +0.6 4,110,925 - ECD_03880 0.69 +0.6 4,110,934 - ECD_03880 0.70 -1.1 4,111,044 - ECD_03880 0.78 -1.1 4,111,055 - ECD_03880 0.79 +0.3 4,111,055 - ECD_03880 0.79 -0.2 4,111,085 - ECD_03880 0.81 -1.3 4,111,234 + -0.9 4,111,235 - -0.5 4,111,258 + -0.7 4,111,258 + -0.7 4,111,259 - -0.6 4,111,259 - -2.4 4,111,259 - +1.2 4,111,324 + -0.6 4,111,401 + -0.3 4,111,416 - +0.7 4,111,416 - -0.0 4,111,433 - +0.5 4,111,434 + -0.8 4,111,590 + ECD_03881 0.18 -0.8 4,111,623 - ECD_03881 0.21 -1.4 4,111,652 - ECD_03881 0.23 +0.6 4,111,682 + ECD_03881 0.25 -0.0 4,111,713 + ECD_03881 0.28 -0.6 4,111,713 + ECD_03881 0.28 -2.0 4,111,714 - ECD_03881 0.28 -0.2 4,111,714 - ECD_03881 0.28 +0.1 4,111,722 + ECD_03881 0.28 +0.0 4,111,722 + ECD_03881 0.28 +0.4 4,111,723 - ECD_03881 0.29 -0.7 4,112,077 - ECD_03881 0.55 -0.7 4,112,154 + ECD_03881 0.61 +0.4 4,112,299 - ECD_03881 0.72 -0.8 4,112,344 - ECD_03881 0.75 -2.3
Or see this region's nucleotide sequence