Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03704 and ECD_03705 are separated by 7 nucleotides ECD_03705 and ECD_03706 are separated by 75 nucleotides ECD_03706 and ECD_03707 overlap by 113 nucleotides
ECD_03704: ECD_03704 - lysophospholipase L2, at 3,902,037 to 3,903,059
_03704
ECD_03705: ECD_03705 - pyridoxal phosphate phosphatase, at 3,903,067 to 3,903,867
_03705
ECD_03706: ECD_03706 - putative inner membrane EamA-like transporter, at 3,903,943 to 3,904,842
_03706
ECD_03707: ECD_03707 - methionine biosynthesis regulon transcriptional regulator, at 3,904,730 to 3,905,683
_03707
Position (kb)
3903
3904
3905 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3902.947 kb on - strand, within ECD_03704 at 3902.947 kb on - strand, within ECD_03704 at 3902.947 kb on - strand, within ECD_03704 at 3903.024 kb on - strand at 3903.058 kb on - strand at 3903.066 kb on + strand at 3903.067 kb on - strand at 3903.067 kb on - strand at 3903.070 kb on + strand at 3903.071 kb on - strand at 3903.071 kb on - strand at 3903.092 kb on + strand at 3903.104 kb on + strand at 3903.105 kb on - strand at 3903.105 kb on - strand at 3903.120 kb on + strand at 3903.120 kb on + strand at 3903.120 kb on + strand at 3903.121 kb on - strand at 3903.121 kb on - strand at 3903.121 kb on - strand at 3903.240 kb on + strand, within ECD_03705 at 3903.240 kb on + strand, within ECD_03705 at 3903.241 kb on - strand, within ECD_03705 at 3903.247 kb on + strand, within ECD_03705 at 3903.248 kb on - strand, within ECD_03705 at 3903.255 kb on + strand, within ECD_03705 at 3903.255 kb on + strand, within ECD_03705 at 3903.255 kb on + strand, within ECD_03705 at 3903.256 kb on - strand, within ECD_03705 at 3903.256 kb on - strand, within ECD_03705 at 3903.256 kb on - strand, within ECD_03705 at 3903.372 kb on + strand, within ECD_03705 at 3903.372 kb on + strand, within ECD_03705 at 3903.372 kb on + strand, within ECD_03705 at 3903.373 kb on - strand, within ECD_03705 at 3903.375 kb on + strand, within ECD_03705 at 3903.375 kb on + strand, within ECD_03705 at 3903.375 kb on + strand, within ECD_03705 at 3903.376 kb on - strand, within ECD_03705 at 3903.403 kb on - strand, within ECD_03705 at 3903.457 kb on + strand, within ECD_03705 at 3903.466 kb on + strand, within ECD_03705 at 3903.466 kb on + strand, within ECD_03705 at 3903.467 kb on - strand, within ECD_03705 at 3903.467 kb on - strand, within ECD_03705 at 3903.694 kb on - strand, within ECD_03705 at 3903.694 kb on - strand, within ECD_03705 at 3903.850 kb on - strand at 3903.856 kb on + strand at 3903.856 kb on + strand at 3903.856 kb on + strand at 3903.856 kb on + strand at 3903.857 kb on - strand at 3903.857 kb on - strand at 3903.899 kb on + strand at 3903.954 kb on + strand at 3903.954 kb on + strand at 3903.954 kb on + strand at 3903.954 kb on + strand at 3903.955 kb on - strand at 3903.955 kb on - strand at 3903.955 kb on - strand at 3903.988 kb on - strand at 3903.994 kb on + strand at 3904.003 kb on + strand at 3904.027 kb on + strand at 3904.027 kb on + strand at 3904.027 kb on + strand at 3904.028 kb on - strand at 3904.120 kb on + strand, within ECD_03706 at 3904.120 kb on + strand, within ECD_03706 at 3904.120 kb on + strand, within ECD_03706 at 3904.120 kb on + strand, within ECD_03706 at 3904.120 kb on + strand, within ECD_03706 at 3904.121 kb on - strand, within ECD_03706 at 3904.121 kb on - strand, within ECD_03706 at 3904.121 kb on - strand, within ECD_03706 at 3904.121 kb on - strand, within ECD_03706 at 3904.121 kb on - strand, within ECD_03706 at 3904.122 kb on + strand, within ECD_03706 at 3904.122 kb on + strand, within ECD_03706 at 3904.122 kb on + strand, within ECD_03706 at 3904.122 kb on + strand, within ECD_03706 at 3904.122 kb on + strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.123 kb on - strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.156 kb on + strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.157 kb on - strand, within ECD_03706 at 3904.158 kb on + strand, within ECD_03706 at 3904.158 kb on + strand, within ECD_03706 at 3904.158 kb on + strand, within ECD_03706 at 3904.158 kb on + strand, within ECD_03706 at 3904.158 kb on + strand, within ECD_03706 at 3904.158 kb on + strand, within ECD_03706 at 3904.159 kb on - strand, within ECD_03706 at 3904.178 kb on - strand, within ECD_03706 at 3904.178 kb on - strand, within ECD_03706 at 3904.178 kb on - strand, within ECD_03706 at 3904.231 kb on + strand, within ECD_03706 at 3904.246 kb on + strand, within ECD_03706 at 3904.246 kb on + strand, within ECD_03706 at 3904.283 kb on - strand, within ECD_03706 at 3904.415 kb on - strand, within ECD_03706 at 3904.453 kb on - strand, within ECD_03706 at 3904.598 kb on - strand, within ECD_03706 at 3904.602 kb on + strand, within ECD_03706 at 3904.602 kb on + strand, within ECD_03706 at 3904.603 kb on - strand, within ECD_03706 at 3904.613 kb on - strand, within ECD_03706 at 3904.650 kb on + strand, within ECD_03706 at 3904.656 kb on + strand, within ECD_03706 at 3904.656 kb on + strand, within ECD_03706 at 3904.657 kb on - strand, within ECD_03706 at 3904.659 kb on + strand, within ECD_03706 at 3904.659 kb on + strand, within ECD_03706 at 3904.660 kb on - strand, within ECD_03706 at 3904.685 kb on + strand, within ECD_03706 at 3904.686 kb on - strand, within ECD_03706 at 3904.728 kb on + strand, within ECD_03706 at 3904.729 kb on - strand, within ECD_03706 at 3904.731 kb on + strand at 3904.732 kb on - strand at 3904.773 kb on + strand at 3904.773 kb on + strand at 3904.774 kb on - strand at 3904.853 kb on - strand, within ECD_03707 at 3904.890 kb on + strand, within ECD_03707 at 3905.018 kb on + strand, within ECD_03707 at 3905.018 kb on + strand, within ECD_03707 at 3905.147 kb on - strand, within ECD_03707 at 3905.203 kb on - strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.360 kb on + strand, within ECD_03707 at 3905.383 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.390 kb on - strand, within ECD_03707 at 3905.390 kb on - strand, within ECD_03707 at 3905.390 kb on - strand, within ECD_03707 at 3905.399 kb on + strand, within ECD_03707 at 3905.400 kb on - strand, within ECD_03707 at 3905.509 kb on + strand, within ECD_03707 at 3905.509 kb on + strand, within ECD_03707 at 3905.541 kb on - strand, within ECD_03707 at 3905.541 kb on - strand, within ECD_03707 at 3905.572 kb on + strand, within ECD_03707 at 3905.573 kb on - strand, within ECD_03707 at 3905.672 kb on + strand at 3905.672 kb on + strand at 3905.673 kb on - strand at 3905.708 kb on + strand at 3905.726 kb on + strand at 3905.727 kb on - strand at 3905.728 kb on + strand at 3905.728 kb on + strand at 3905.728 kb on + strand at 3905.728 kb on + strand at 3905.729 kb on - strand at 3905.729 kb on - strand at 3905.729 kb on - strand at 3905.729 kb on - strand at 3905.793 kb on + strand at 3905.830 kb on + strand at 3905.831 kb on - strand at 3905.831 kb on - strand at 3905.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,902,947 - ECD_03704 0.89 -0.1 3,902,947 - ECD_03704 0.89 -0.9 3,902,947 - ECD_03704 0.89 -1.0 3,903,024 - +0.6 3,903,058 - -0.9 3,903,066 + +0.2 3,903,067 - -0.1 3,903,067 - -1.1 3,903,070 + +0.1 3,903,071 - -0.3 3,903,071 - +0.2 3,903,092 + -1.0 3,903,104 + +0.3 3,903,105 - +1.6 3,903,105 - -2.0 3,903,120 + -1.3 3,903,120 + +0.1 3,903,120 + +2.0 3,903,121 - -0.2 3,903,121 - -0.4 3,903,121 - -1.2 3,903,240 + ECD_03705 0.22 +1.4 3,903,240 + ECD_03705 0.22 -0.3 3,903,241 - ECD_03705 0.22 -1.1 3,903,247 + ECD_03705 0.22 +0.6 3,903,248 - ECD_03705 0.23 -1.8 3,903,255 + ECD_03705 0.23 -0.2 3,903,255 + ECD_03705 0.23 +0.6 3,903,255 + ECD_03705 0.23 +0.4 3,903,256 - ECD_03705 0.24 -0.6 3,903,256 - ECD_03705 0.24 +0.9 3,903,256 - ECD_03705 0.24 -0.1 3,903,372 + ECD_03705 0.38 +0.3 3,903,372 + ECD_03705 0.38 +0.9 3,903,372 + ECD_03705 0.38 -2.4 3,903,373 - ECD_03705 0.38 +0.1 3,903,375 + ECD_03705 0.38 -0.2 3,903,375 + ECD_03705 0.38 -1.8 3,903,375 + ECD_03705 0.38 -1.1 3,903,376 - ECD_03705 0.39 -0.7 3,903,403 - ECD_03705 0.42 +0.3 3,903,457 + ECD_03705 0.49 +2.0 3,903,466 + ECD_03705 0.50 +0.4 3,903,466 + ECD_03705 0.50 +0.8 3,903,467 - ECD_03705 0.50 -1.0 3,903,467 - ECD_03705 0.50 +0.1 3,903,694 - ECD_03705 0.78 +0.4 3,903,694 - ECD_03705 0.78 +0.5 3,903,850 - -0.1 3,903,856 + -0.6 3,903,856 + -1.7 3,903,856 + -1.2 3,903,856 + +0.2 3,903,857 - -0.3 3,903,857 - +0.4 3,903,899 + -0.1 3,903,954 + -0.4 3,903,954 + -2.0 3,903,954 + -0.8 3,903,954 + -1.1 3,903,955 - -0.6 3,903,955 - -0.7 3,903,955 - -0.6 3,903,988 - -0.8 3,903,994 + -1.9 3,904,003 + -0.4 3,904,027 + +1.4 3,904,027 + -0.7 3,904,027 + -0.8 3,904,028 - -1.7 3,904,120 + ECD_03706 0.20 -2.1 3,904,120 + ECD_03706 0.20 -1.2 3,904,120 + ECD_03706 0.20 -0.3 3,904,120 + ECD_03706 0.20 -0.2 3,904,120 + ECD_03706 0.20 -0.4 3,904,121 - ECD_03706 0.20 -1.2 3,904,121 - ECD_03706 0.20 +0.2 3,904,121 - ECD_03706 0.20 +0.6 3,904,121 - ECD_03706 0.20 -0.8 3,904,121 - ECD_03706 0.20 -0.8 3,904,122 + ECD_03706 0.20 -0.8 3,904,122 + ECD_03706 0.20 +0.2 3,904,122 + ECD_03706 0.20 -0.1 3,904,122 + ECD_03706 0.20 -0.4 3,904,122 + ECD_03706 0.20 +0.0 3,904,123 - ECD_03706 0.20 -0.9 3,904,123 - ECD_03706 0.20 -0.0 3,904,123 - ECD_03706 0.20 +0.6 3,904,123 - ECD_03706 0.20 -0.9 3,904,123 - ECD_03706 0.20 +0.1 3,904,123 - ECD_03706 0.20 +0.2 3,904,123 - ECD_03706 0.20 +1.0 3,904,123 - ECD_03706 0.20 -0.6 3,904,156 + ECD_03706 0.24 +0.7 3,904,156 + ECD_03706 0.24 -1.0 3,904,156 + ECD_03706 0.24 -0.0 3,904,156 + ECD_03706 0.24 -0.2 3,904,156 + ECD_03706 0.24 +1.2 3,904,156 + ECD_03706 0.24 -0.4 3,904,156 + ECD_03706 0.24 -1.0 3,904,156 + ECD_03706 0.24 -3.1 3,904,156 + ECD_03706 0.24 -1.7 3,904,156 + ECD_03706 0.24 -0.4 3,904,156 + ECD_03706 0.24 -0.6 3,904,156 + ECD_03706 0.24 +0.7 3,904,157 - ECD_03706 0.24 -0.6 3,904,157 - ECD_03706 0.24 -0.2 3,904,157 - ECD_03706 0.24 -1.7 3,904,157 - ECD_03706 0.24 -0.5 3,904,157 - ECD_03706 0.24 -0.3 3,904,157 - ECD_03706 0.24 -0.2 3,904,157 - ECD_03706 0.24 +0.1 3,904,157 - ECD_03706 0.24 +0.4 3,904,158 + ECD_03706 0.24 -0.2 3,904,158 + ECD_03706 0.24 +0.3 3,904,158 + ECD_03706 0.24 -1.6 3,904,158 + ECD_03706 0.24 -0.5 3,904,158 + ECD_03706 0.24 -0.9 3,904,158 + ECD_03706 0.24 -0.6 3,904,159 - ECD_03706 0.24 -0.9 3,904,178 - ECD_03706 0.26 -0.5 3,904,178 - ECD_03706 0.26 -0.8 3,904,178 - ECD_03706 0.26 -1.2 3,904,231 + ECD_03706 0.32 +0.1 3,904,246 + ECD_03706 0.34 +1.0 3,904,246 + ECD_03706 0.34 -1.3 3,904,283 - ECD_03706 0.38 +0.5 3,904,415 - ECD_03706 0.52 -0.1 3,904,453 - ECD_03706 0.57 +0.4 3,904,598 - ECD_03706 0.73 +1.8 3,904,602 + ECD_03706 0.73 -3.1 3,904,602 + ECD_03706 0.73 -0.8 3,904,603 - ECD_03706 0.73 -0.4 3,904,613 - ECD_03706 0.74 -0.0 3,904,650 + ECD_03706 0.79 -2.1 3,904,656 + ECD_03706 0.79 +0.1 3,904,656 + ECD_03706 0.79 +0.5 3,904,657 - ECD_03706 0.79 +0.8 3,904,659 + ECD_03706 0.80 -0.8 3,904,659 + ECD_03706 0.80 +1.1 3,904,660 - ECD_03706 0.80 -2.4 3,904,685 + ECD_03706 0.82 +0.7 3,904,686 - ECD_03706 0.83 -0.6 3,904,728 + ECD_03706 0.87 -0.9 3,904,729 - ECD_03706 0.87 -0.2 3,904,731 + -2.4 3,904,732 - -0.7 3,904,773 + -0.1 3,904,773 + +0.6 3,904,774 - -0.0 3,904,853 - ECD_03707 0.13 -1.3 3,904,890 + ECD_03707 0.17 -0.3 3,905,018 + ECD_03707 0.30 -1.3 3,905,018 + ECD_03707 0.30 -0.7 3,905,147 - ECD_03707 0.44 -1.9 3,905,203 - ECD_03707 0.50 -0.1 3,905,245 + ECD_03707 0.54 -0.1 3,905,245 + ECD_03707 0.54 +0.3 3,905,245 + ECD_03707 0.54 +0.6 3,905,245 + ECD_03707 0.54 -0.6 3,905,360 + ECD_03707 0.66 -1.4 3,905,383 + ECD_03707 0.68 +0.6 3,905,389 + ECD_03707 0.69 -1.5 3,905,389 + ECD_03707 0.69 -1.6 3,905,389 + ECD_03707 0.69 -2.1 3,905,389 + ECD_03707 0.69 -1.2 3,905,389 + ECD_03707 0.69 +0.6 3,905,390 - ECD_03707 0.69 -0.2 3,905,390 - ECD_03707 0.69 +0.1 3,905,390 - ECD_03707 0.69 +0.3 3,905,399 + ECD_03707 0.70 +0.5 3,905,400 - ECD_03707 0.70 +0.4 3,905,509 + ECD_03707 0.82 -1.0 3,905,509 + ECD_03707 0.82 +0.7 3,905,541 - ECD_03707 0.85 -0.7 3,905,541 - ECD_03707 0.85 +0.3 3,905,572 + ECD_03707 0.88 -0.6 3,905,573 - ECD_03707 0.88 -1.4 3,905,672 + -2.5 3,905,672 + -0.2 3,905,673 - -0.3 3,905,708 + -1.4 3,905,726 + -0.6 3,905,727 - -2.0 3,905,728 + +0.3 3,905,728 + -0.3 3,905,728 + -0.7 3,905,728 + -0.2 3,905,729 - -1.4 3,905,729 - -0.6 3,905,729 - -0.5 3,905,729 - -0.8 3,905,793 + -0.5 3,905,830 + +0.3 3,905,831 - -1.1 3,905,831 - -0.1 3,905,839 - -0.6
Or see this region's nucleotide sequence