Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03677 and ECD_03678 are separated by 2 nucleotides ECD_03678 and ECD_03679 are separated by 21 nucleotides ECD_03679 and ECD_03680 overlap by 4 nucleotides
ECD_03677: ECD_03677 - putative protoheme IX synthesis protein, at 3,876,932 to 3,878,128
_03677
ECD_03678: ECD_03678 - putative uroporphyrinogen III methyltransferase, at 3,878,131 to 3,879,336
_03678
ECD_03679: ECD_03679 - uroporphyrinogen III synthase, at 3,879,358 to 3,880,098
_03679
ECD_03680: ECD_03680 - hydroxymethylbilane synthase, at 3,880,095 to 3,881,036
_03680
Position (kb)
3878
3879
3880 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3877.309 kb on + strand, within ECD_03677 at 3877.309 kb on + strand, within ECD_03677 at 3877.310 kb on - strand, within ECD_03677 at 3877.341 kb on - strand, within ECD_03677 at 3877.381 kb on + strand, within ECD_03677 at 3877.504 kb on + strand, within ECD_03677 at 3877.539 kb on + strand, within ECD_03677 at 3877.539 kb on + strand, within ECD_03677 at 3877.539 kb on + strand, within ECD_03677 at 3877.540 kb on - strand, within ECD_03677 at 3877.540 kb on - strand, within ECD_03677 at 3877.540 kb on - strand, within ECD_03677 at 3877.540 kb on - strand, within ECD_03677 at 3877.540 kb on - strand, within ECD_03677 at 3877.583 kb on - strand, within ECD_03677 at 3877.583 kb on - strand, within ECD_03677 at 3877.650 kb on - strand, within ECD_03677 at 3877.650 kb on - strand, within ECD_03677 at 3877.650 kb on - strand, within ECD_03677 at 3877.768 kb on - strand, within ECD_03677 at 3877.831 kb on - strand, within ECD_03677 at 3877.873 kb on + strand, within ECD_03677 at 3877.874 kb on - strand, within ECD_03677 at 3877.891 kb on + strand, within ECD_03677 at 3877.891 kb on + strand, within ECD_03677 at 3877.892 kb on - strand, within ECD_03677 at 3877.892 kb on - strand, within ECD_03677 at 3877.970 kb on + strand, within ECD_03677 at 3877.970 kb on + strand, within ECD_03677 at 3877.971 kb on - strand, within ECD_03677 at 3877.971 kb on - strand, within ECD_03677 at 3878.025 kb on + strand at 3878.025 kb on + strand at 3878.025 kb on + strand at 3878.025 kb on + strand at 3878.025 kb on + strand at 3878.025 kb on + strand at 3878.026 kb on - strand at 3878.026 kb on - strand at 3878.026 kb on - strand at 3878.026 kb on - strand at 3878.026 kb on - strand at 3878.045 kb on + strand at 3878.045 kb on + strand at 3878.045 kb on + strand at 3878.046 kb on - strand at 3878.046 kb on - strand at 3878.046 kb on - strand at 3878.046 kb on - strand at 3878.046 kb on - strand at 3878.049 kb on + strand at 3878.050 kb on - strand at 3878.114 kb on + strand at 3878.123 kb on + strand at 3878.161 kb on - strand at 3878.322 kb on + strand, within ECD_03678 at 3878.388 kb on - strand, within ECD_03678 at 3878.388 kb on - strand, within ECD_03678 at 3878.390 kb on + strand, within ECD_03678 at 3878.390 kb on + strand, within ECD_03678 at 3878.391 kb on - strand, within ECD_03678 at 3878.391 kb on - strand, within ECD_03678 at 3878.398 kb on + strand, within ECD_03678 at 3878.432 kb on + strand, within ECD_03678 at 3878.504 kb on + strand, within ECD_03678 at 3878.504 kb on + strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.509 kb on - strand, within ECD_03678 at 3878.965 kb on - strand, within ECD_03678 at 3879.173 kb on + strand, within ECD_03678 at 3879.173 kb on + strand, within ECD_03678 at 3879.174 kb on - strand, within ECD_03678 at 3879.351 kb on - strand at 3879.359 kb on + strand at 3879.360 kb on - strand at 3879.364 kb on + strand at 3879.364 kb on + strand at 3879.364 kb on + strand at 3879.364 kb on + strand at 3879.365 kb on - strand at 3879.365 kb on - strand at 3879.365 kb on - strand at 3879.365 kb on - strand at 3879.374 kb on - strand at 3880.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,877,309 + ECD_03677 0.31 +0.9 3,877,309 + ECD_03677 0.31 +0.1 3,877,310 - ECD_03677 0.32 +0.0 3,877,341 - ECD_03677 0.34 -0.4 3,877,381 + ECD_03677 0.38 +1.1 3,877,504 + ECD_03677 0.48 -2.1 3,877,539 + ECD_03677 0.51 -1.8 3,877,539 + ECD_03677 0.51 -3.0 3,877,539 + ECD_03677 0.51 -0.1 3,877,540 - ECD_03677 0.51 -1.5 3,877,540 - ECD_03677 0.51 -0.6 3,877,540 - ECD_03677 0.51 -2.2 3,877,540 - ECD_03677 0.51 -1.2 3,877,540 - ECD_03677 0.51 -2.0 3,877,583 - ECD_03677 0.54 -1.0 3,877,583 - ECD_03677 0.54 -0.6 3,877,650 - ECD_03677 0.60 -0.4 3,877,650 - ECD_03677 0.60 -0.6 3,877,650 - ECD_03677 0.60 -1.3 3,877,768 - ECD_03677 0.70 -1.2 3,877,831 - ECD_03677 0.75 -1.3 3,877,873 + ECD_03677 0.79 +0.1 3,877,874 - ECD_03677 0.79 +1.3 3,877,891 + ECD_03677 0.80 -2.4 3,877,891 + ECD_03677 0.80 -1.5 3,877,892 - ECD_03677 0.80 -1.3 3,877,892 - ECD_03677 0.80 +0.7 3,877,970 + ECD_03677 0.87 -2.3 3,877,970 + ECD_03677 0.87 +0.4 3,877,971 - ECD_03677 0.87 -1.0 3,877,971 - ECD_03677 0.87 -0.3 3,878,025 + -1.3 3,878,025 + -0.6 3,878,025 + -2.5 3,878,025 + -0.5 3,878,025 + -0.7 3,878,025 + +0.2 3,878,026 - -1.0 3,878,026 - -0.5 3,878,026 - +0.4 3,878,026 - -2.8 3,878,026 - +0.8 3,878,045 + -1.5 3,878,045 + -1.3 3,878,045 + -0.6 3,878,046 - -1.5 3,878,046 - -0.8 3,878,046 - -1.1 3,878,046 - -1.6 3,878,046 - -2.7 3,878,049 + -0.3 3,878,050 - -1.7 3,878,114 + -1.6 3,878,123 + -1.3 3,878,161 - -2.3 3,878,322 + ECD_03678 0.16 -0.5 3,878,388 - ECD_03678 0.21 -2.2 3,878,388 - ECD_03678 0.21 +0.4 3,878,390 + ECD_03678 0.21 -0.2 3,878,390 + ECD_03678 0.21 -0.1 3,878,391 - ECD_03678 0.22 -1.6 3,878,391 - ECD_03678 0.22 +0.2 3,878,398 + ECD_03678 0.22 -0.8 3,878,432 + ECD_03678 0.25 +0.1 3,878,504 + ECD_03678 0.31 -1.3 3,878,504 + ECD_03678 0.31 +1.2 3,878,505 - ECD_03678 0.31 -1.2 3,878,505 - ECD_03678 0.31 -2.5 3,878,505 - ECD_03678 0.31 -1.1 3,878,505 - ECD_03678 0.31 +0.5 3,878,505 - ECD_03678 0.31 +1.8 3,878,505 - ECD_03678 0.31 -0.7 3,878,509 - ECD_03678 0.31 -1.7 3,878,965 - ECD_03678 0.69 -1.7 3,879,173 + ECD_03678 0.86 -0.4 3,879,173 + ECD_03678 0.86 -0.5 3,879,174 - ECD_03678 0.86 +0.1 3,879,351 - -0.9 3,879,359 + -0.3 3,879,360 - +0.2 3,879,364 + +0.7 3,879,364 + +1.5 3,879,364 + +1.8 3,879,364 + -0.5 3,879,365 - +1.0 3,879,365 - -1.1 3,879,365 - -1.4 3,879,365 - -0.7 3,879,374 - +0.3 3,880,118 - -0.1
Or see this region's nucleotide sequence