Strain Fitness in Escherichia coli BL21 around ECD_03678

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03677 and ECD_03678 are separated by 2 nucleotidesECD_03678 and ECD_03679 are separated by 21 nucleotidesECD_03679 and ECD_03680 overlap by 4 nucleotides ECD_03677: ECD_03677 - putative protoheme IX synthesis protein, at 3,876,932 to 3,878,128 _03677 ECD_03678: ECD_03678 - putative uroporphyrinogen III methyltransferase, at 3,878,131 to 3,879,336 _03678 ECD_03679: ECD_03679 - uroporphyrinogen III synthase, at 3,879,358 to 3,880,098 _03679 ECD_03680: ECD_03680 - hydroxymethylbilane synthase, at 3,880,095 to 3,881,036 _03680 Position (kb) 3878 3879 3880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3877.309 kb on + strand, within ECD_03677at 3877.309 kb on + strand, within ECD_03677at 3877.310 kb on - strand, within ECD_03677at 3877.341 kb on - strand, within ECD_03677at 3877.381 kb on + strand, within ECD_03677at 3877.504 kb on + strand, within ECD_03677at 3877.539 kb on + strand, within ECD_03677at 3877.539 kb on + strand, within ECD_03677at 3877.539 kb on + strand, within ECD_03677at 3877.540 kb on - strand, within ECD_03677at 3877.540 kb on - strand, within ECD_03677at 3877.540 kb on - strand, within ECD_03677at 3877.540 kb on - strand, within ECD_03677at 3877.540 kb on - strand, within ECD_03677at 3877.583 kb on - strand, within ECD_03677at 3877.583 kb on - strand, within ECD_03677at 3877.650 kb on - strand, within ECD_03677at 3877.650 kb on - strand, within ECD_03677at 3877.650 kb on - strand, within ECD_03677at 3877.768 kb on - strand, within ECD_03677at 3877.831 kb on - strand, within ECD_03677at 3877.873 kb on + strand, within ECD_03677at 3877.874 kb on - strand, within ECD_03677at 3877.891 kb on + strand, within ECD_03677at 3877.891 kb on + strand, within ECD_03677at 3877.892 kb on - strand, within ECD_03677at 3877.892 kb on - strand, within ECD_03677at 3877.970 kb on + strand, within ECD_03677at 3877.970 kb on + strand, within ECD_03677at 3877.971 kb on - strand, within ECD_03677at 3877.971 kb on - strand, within ECD_03677at 3878.025 kb on + strandat 3878.025 kb on + strandat 3878.025 kb on + strandat 3878.025 kb on + strandat 3878.025 kb on + strandat 3878.025 kb on + strandat 3878.026 kb on - strandat 3878.026 kb on - strandat 3878.026 kb on - strandat 3878.026 kb on - strandat 3878.026 kb on - strandat 3878.045 kb on + strandat 3878.045 kb on + strandat 3878.045 kb on + strandat 3878.046 kb on - strandat 3878.046 kb on - strandat 3878.046 kb on - strandat 3878.046 kb on - strandat 3878.046 kb on - strandat 3878.049 kb on + strandat 3878.050 kb on - strandat 3878.114 kb on + strandat 3878.123 kb on + strandat 3878.161 kb on - strandat 3878.322 kb on + strand, within ECD_03678at 3878.388 kb on - strand, within ECD_03678at 3878.388 kb on - strand, within ECD_03678at 3878.390 kb on + strand, within ECD_03678at 3878.390 kb on + strand, within ECD_03678at 3878.391 kb on - strand, within ECD_03678at 3878.391 kb on - strand, within ECD_03678at 3878.398 kb on + strand, within ECD_03678at 3878.432 kb on + strand, within ECD_03678at 3878.504 kb on + strand, within ECD_03678at 3878.504 kb on + strand, within ECD_03678at 3878.505 kb on - strand, within ECD_03678at 3878.505 kb on - strand, within ECD_03678at 3878.505 kb on - strand, within ECD_03678at 3878.505 kb on - strand, within ECD_03678at 3878.505 kb on - strand, within ECD_03678at 3878.505 kb on - strand, within ECD_03678at 3878.509 kb on - strand, within ECD_03678at 3878.965 kb on - strand, within ECD_03678at 3879.173 kb on + strand, within ECD_03678at 3879.173 kb on + strand, within ECD_03678at 3879.174 kb on - strand, within ECD_03678at 3879.351 kb on - strandat 3879.359 kb on + strandat 3879.360 kb on - strandat 3879.364 kb on + strandat 3879.364 kb on + strandat 3879.364 kb on + strandat 3879.364 kb on + strandat 3879.365 kb on - strandat 3879.365 kb on - strandat 3879.365 kb on - strandat 3879.365 kb on - strandat 3879.374 kb on - strandat 3880.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,877,309 + ECD_03677 0.31 +0.9
3,877,309 + ECD_03677 0.31 +0.1
3,877,310 - ECD_03677 0.32 +0.0
3,877,341 - ECD_03677 0.34 -0.4
3,877,381 + ECD_03677 0.38 +1.1
3,877,504 + ECD_03677 0.48 -2.1
3,877,539 + ECD_03677 0.51 -1.8
3,877,539 + ECD_03677 0.51 -3.0
3,877,539 + ECD_03677 0.51 -0.1
3,877,540 - ECD_03677 0.51 -1.5
3,877,540 - ECD_03677 0.51 -0.6
3,877,540 - ECD_03677 0.51 -2.2
3,877,540 - ECD_03677 0.51 -1.2
3,877,540 - ECD_03677 0.51 -2.0
3,877,583 - ECD_03677 0.54 -1.0
3,877,583 - ECD_03677 0.54 -0.6
3,877,650 - ECD_03677 0.60 -0.4
3,877,650 - ECD_03677 0.60 -0.6
3,877,650 - ECD_03677 0.60 -1.3
3,877,768 - ECD_03677 0.70 -1.2
3,877,831 - ECD_03677 0.75 -1.3
3,877,873 + ECD_03677 0.79 +0.1
3,877,874 - ECD_03677 0.79 +1.3
3,877,891 + ECD_03677 0.80 -2.4
3,877,891 + ECD_03677 0.80 -1.5
3,877,892 - ECD_03677 0.80 -1.3
3,877,892 - ECD_03677 0.80 +0.7
3,877,970 + ECD_03677 0.87 -2.3
3,877,970 + ECD_03677 0.87 +0.4
3,877,971 - ECD_03677 0.87 -1.0
3,877,971 - ECD_03677 0.87 -0.3
3,878,025 + -1.3
3,878,025 + -0.6
3,878,025 + -2.5
3,878,025 + -0.5
3,878,025 + -0.7
3,878,025 + +0.2
3,878,026 - -1.0
3,878,026 - -0.5
3,878,026 - +0.4
3,878,026 - -2.8
3,878,026 - +0.8
3,878,045 + -1.5
3,878,045 + -1.3
3,878,045 + -0.6
3,878,046 - -1.5
3,878,046 - -0.8
3,878,046 - -1.1
3,878,046 - -1.6
3,878,046 - -2.7
3,878,049 + -0.3
3,878,050 - -1.7
3,878,114 + -1.6
3,878,123 + -1.3
3,878,161 - -2.3
3,878,322 + ECD_03678 0.16 -0.5
3,878,388 - ECD_03678 0.21 -2.2
3,878,388 - ECD_03678 0.21 +0.4
3,878,390 + ECD_03678 0.21 -0.2
3,878,390 + ECD_03678 0.21 -0.1
3,878,391 - ECD_03678 0.22 -1.6
3,878,391 - ECD_03678 0.22 +0.2
3,878,398 + ECD_03678 0.22 -0.8
3,878,432 + ECD_03678 0.25 +0.1
3,878,504 + ECD_03678 0.31 -1.3
3,878,504 + ECD_03678 0.31 +1.2
3,878,505 - ECD_03678 0.31 -1.2
3,878,505 - ECD_03678 0.31 -2.5
3,878,505 - ECD_03678 0.31 -1.1
3,878,505 - ECD_03678 0.31 +0.5
3,878,505 - ECD_03678 0.31 +1.8
3,878,505 - ECD_03678 0.31 -0.7
3,878,509 - ECD_03678 0.31 -1.7
3,878,965 - ECD_03678 0.69 -1.7
3,879,173 + ECD_03678 0.86 -0.4
3,879,173 + ECD_03678 0.86 -0.5
3,879,174 - ECD_03678 0.86 +0.1
3,879,351 - -0.9
3,879,359 + -0.3
3,879,360 - +0.2
3,879,364 + +0.7
3,879,364 + +1.5
3,879,364 + +1.8
3,879,364 + -0.5
3,879,365 - +1.0
3,879,365 - -1.1
3,879,365 - -1.4
3,879,365 - -0.7
3,879,374 - +0.3
3,880,118 - -0.1

Or see this region's nucleotide sequence