Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03657 and ECD_03658 are separated by 133 nucleotides ECD_03658 and ECD_03659 are separated by 130 nucleotides ECD_03659 and ECD_03660 are separated by 140 nucleotides ECD_03660 and ECD_03661 are separated by 84 nucleotides
ECD_03657: ECD_03657 - guanosine pentaphosphatase/exopolyphosphatase, at 3,852,987 to 3,854,471
_03657
ECD_03658: ECD_03658 - ATP-dependent RNA helicase, at 3,854,605 to 3,855,870
_03658
ECD_03659: ECD_03659 - thioredoxin 1, at 3,856,001 to 3,856,330
_03659
ECD_03660: ECD_03660 - rho operon leader peptide, at 3,856,471 to 3,856,572
_03660
ECD_03661: ECD_03661 - transcription termination factor, at 3,856,657 to 3,857,916
_03661
Position (kb)
3854
3855
3856 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3853.622 kb on + strand, within ECD_03657 at 3853.623 kb on - strand, within ECD_03657 at 3853.683 kb on + strand, within ECD_03657 at 3853.683 kb on + strand, within ECD_03657 at 3853.779 kb on - strand, within ECD_03657 at 3853.867 kb on + strand, within ECD_03657 at 3853.872 kb on + strand, within ECD_03657 at 3853.872 kb on + strand, within ECD_03657 at 3853.873 kb on - strand, within ECD_03657 at 3854.056 kb on - strand, within ECD_03657 at 3854.057 kb on + strand, within ECD_03657 at 3854.058 kb on - strand, within ECD_03657 at 3854.111 kb on - strand, within ECD_03657 at 3854.211 kb on + strand, within ECD_03657 at 3854.212 kb on - strand, within ECD_03657 at 3854.253 kb on - strand, within ECD_03657 at 3854.312 kb on + strand, within ECD_03657 at 3854.313 kb on - strand, within ECD_03657 at 3854.450 kb on - strand at 3854.450 kb on - strand at 3854.471 kb on + strand at 3854.529 kb on - strand at 3854.529 kb on - strand at 3854.529 kb on - strand at 3854.529 kb on - strand at 3854.531 kb on + strand at 3854.531 kb on + strand at 3854.531 kb on + strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.532 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.537 kb on - strand at 3854.572 kb on - strand at 3854.603 kb on - strand at 3854.662 kb on - strand at 3854.662 kb on - strand at 3854.749 kb on - strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.750 kb on + strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.751 kb on - strand, within ECD_03658 at 3854.761 kb on - strand, within ECD_03658 at 3854.761 kb on - strand, within ECD_03658 at 3854.780 kb on + strand, within ECD_03658 at 3854.781 kb on - strand, within ECD_03658 at 3854.781 kb on - strand, within ECD_03658 at 3854.781 kb on - strand, within ECD_03658 at 3854.802 kb on + strand, within ECD_03658 at 3854.802 kb on + strand, within ECD_03658 at 3854.802 kb on + strand, within ECD_03658 at 3854.833 kb on - strand, within ECD_03658 at 3854.842 kb on - strand, within ECD_03658 at 3854.852 kb on + strand, within ECD_03658 at 3854.873 kb on - strand, within ECD_03658 at 3854.879 kb on + strand, within ECD_03658 at 3854.880 kb on - strand, within ECD_03658 at 3854.880 kb on - strand, within ECD_03658 at 3854.884 kb on - strand, within ECD_03658 at 3854.908 kb on - strand, within ECD_03658 at 3854.908 kb on - strand, within ECD_03658 at 3855.078 kb on + strand, within ECD_03658 at 3855.079 kb on - strand, within ECD_03658 at 3855.154 kb on - strand, within ECD_03658 at 3855.154 kb on - strand, within ECD_03658 at 3855.178 kb on - strand, within ECD_03658 at 3855.181 kb on - strand, within ECD_03658 at 3855.182 kb on - strand, within ECD_03658 at 3855.216 kb on + strand, within ECD_03658 at 3855.216 kb on + strand, within ECD_03658 at 3855.217 kb on - strand, within ECD_03658 at 3855.218 kb on + strand, within ECD_03658 at 3855.219 kb on - strand, within ECD_03658 at 3855.219 kb on - strand, within ECD_03658 at 3855.342 kb on + strand, within ECD_03658 at 3855.342 kb on + strand, within ECD_03658 at 3855.343 kb on - strand, within ECD_03658 at 3855.343 kb on - strand, within ECD_03658 at 3855.359 kb on + strand, within ECD_03658 at 3855.359 kb on + strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.360 kb on - strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.411 kb on + strand, within ECD_03658 at 3855.412 kb on - strand, within ECD_03658 at 3855.428 kb on + strand, within ECD_03658 at 3855.428 kb on + strand, within ECD_03658 at 3855.428 kb on + strand, within ECD_03658 at 3855.429 kb on - strand, within ECD_03658 at 3855.429 kb on - strand, within ECD_03658 at 3855.429 kb on - strand, within ECD_03658 at 3855.436 kb on + strand, within ECD_03658 at 3855.437 kb on - strand, within ECD_03658 at 3855.516 kb on - strand, within ECD_03658 at 3855.516 kb on - strand, within ECD_03658 at 3855.516 kb on - strand, within ECD_03658 at 3855.540 kb on + strand, within ECD_03658 at 3855.603 kb on + strand, within ECD_03658 at 3855.604 kb on - strand, within ECD_03658 at 3855.607 kb on + strand, within ECD_03658 at 3855.607 kb on + strand, within ECD_03658 at 3855.608 kb on - strand, within ECD_03658 at 3855.662 kb on + strand, within ECD_03658 at 3855.662 kb on + strand, within ECD_03658 at 3855.663 kb on - strand, within ECD_03658 at 3855.678 kb on + strand, within ECD_03658 at 3855.679 kb on - strand, within ECD_03658 at 3855.775 kb on - strand at 3855.809 kb on - strand at 3855.809 kb on - strand at 3855.854 kb on - strand at 3855.870 kb on + strand at 3855.870 kb on + strand at 3855.870 kb on + strand at 3855.870 kb on + strand at 3855.870 kb on + strand at 3855.871 kb on - strand at 3855.871 kb on - strand at 3855.878 kb on + strand at 3855.892 kb on - strand at 3855.895 kb on - strand at 3855.895 kb on - strand at 3855.938 kb on - strand at 3855.951 kb on + strand at 3855.951 kb on + strand at 3855.952 kb on - strand at 3855.982 kb on + strand at 3855.983 kb on - strand at 3855.998 kb on + strand at 3855.998 kb on + strand at 3855.998 kb on + strand at 3855.998 kb on + strand at 3855.999 kb on - strand at 3855.999 kb on - strand at 3855.999 kb on - strand at 3855.999 kb on - strand at 3855.999 kb on - strand at 3856.000 kb on + strand at 3856.000 kb on + strand at 3856.212 kb on - strand, within ECD_03659 at 3856.288 kb on + strand, within ECD_03659 at 3856.328 kb on + strand at 3856.391 kb on - strand at 3856.395 kb on + strand at 3856.395 kb on + strand at 3856.396 kb on - strand at 3856.412 kb on + strand at 3856.412 kb on + strand at 3856.418 kb on + strand at 3856.423 kb on + strand at 3856.423 kb on + strand at 3856.423 kb on + strand at 3856.423 kb on + strand at 3856.423 kb on + strand at 3856.426 kb on + strand at 3856.426 kb on + strand at 3856.426 kb on + strand at 3856.468 kb on + strand at 3856.531 kb on + strand, within ECD_03660 at 3856.531 kb on + strand, within ECD_03660 at 3856.640 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,853,622 + ECD_03657 0.43 +0.5 3,853,623 - ECD_03657 0.43 -0.0 3,853,683 + ECD_03657 0.47 -0.1 3,853,683 + ECD_03657 0.47 +2.1 3,853,779 - ECD_03657 0.53 +1.1 3,853,867 + ECD_03657 0.59 -0.5 3,853,872 + ECD_03657 0.60 +1.1 3,853,872 + ECD_03657 0.60 +3.1 3,853,873 - ECD_03657 0.60 +1.0 3,854,056 - ECD_03657 0.72 -0.5 3,854,057 + ECD_03657 0.72 -0.5 3,854,058 - ECD_03657 0.72 +1.8 3,854,111 - ECD_03657 0.76 +0.5 3,854,211 + ECD_03657 0.82 +0.8 3,854,212 - ECD_03657 0.82 -2.4 3,854,253 - ECD_03657 0.85 -1.8 3,854,312 + ECD_03657 0.89 +0.9 3,854,313 - ECD_03657 0.89 -1.2 3,854,450 - +0.1 3,854,450 - +0.9 3,854,471 + +2.5 3,854,529 - -0.2 3,854,529 - -0.3 3,854,529 - -0.1 3,854,529 - -0.6 3,854,531 + +0.3 3,854,531 + +0.5 3,854,531 + -0.7 3,854,532 - -0.7 3,854,532 - -1.2 3,854,532 - -1.2 3,854,532 - +0.3 3,854,532 - -1.0 3,854,532 - +0.1 3,854,532 - -0.5 3,854,537 - +0.0 3,854,537 - +0.1 3,854,537 - +0.0 3,854,537 - -0.7 3,854,537 - -1.8 3,854,572 - +0.8 3,854,603 - +0.8 3,854,662 - -0.2 3,854,662 - +0.5 3,854,749 - ECD_03658 0.11 -0.1 3,854,750 + ECD_03658 0.11 -0.4 3,854,750 + ECD_03658 0.11 +2.2 3,854,750 + ECD_03658 0.11 +1.2 3,854,750 + ECD_03658 0.11 +1.1 3,854,750 + ECD_03658 0.11 +1.8 3,854,750 + ECD_03658 0.11 +3.1 3,854,751 - ECD_03658 0.12 +0.1 3,854,751 - ECD_03658 0.12 +0.9 3,854,751 - ECD_03658 0.12 +0.3 3,854,751 - ECD_03658 0.12 +1.9 3,854,751 - ECD_03658 0.12 +0.7 3,854,751 - ECD_03658 0.12 +0.9 3,854,751 - ECD_03658 0.12 +0.1 3,854,751 - ECD_03658 0.12 +1.2 3,854,751 - ECD_03658 0.12 +0.5 3,854,761 - ECD_03658 0.12 +0.3 3,854,761 - ECD_03658 0.12 +1.2 3,854,780 + ECD_03658 0.14 +1.1 3,854,781 - ECD_03658 0.14 -0.1 3,854,781 - ECD_03658 0.14 +0.9 3,854,781 - ECD_03658 0.14 +1.1 3,854,802 + ECD_03658 0.16 +2.4 3,854,802 + ECD_03658 0.16 +1.8 3,854,802 + ECD_03658 0.16 +1.4 3,854,833 - ECD_03658 0.18 +0.7 3,854,842 - ECD_03658 0.19 +1.4 3,854,852 + ECD_03658 0.20 +1.2 3,854,873 - ECD_03658 0.21 +1.1 3,854,879 + ECD_03658 0.22 +2.0 3,854,880 - ECD_03658 0.22 +1.1 3,854,880 - ECD_03658 0.22 +1.0 3,854,884 - ECD_03658 0.22 +0.5 3,854,908 - ECD_03658 0.24 -0.1 3,854,908 - ECD_03658 0.24 +1.9 3,855,078 + ECD_03658 0.37 +0.5 3,855,079 - ECD_03658 0.37 +0.8 3,855,154 - ECD_03658 0.43 +1.4 3,855,154 - ECD_03658 0.43 +1.4 3,855,178 - ECD_03658 0.45 -0.2 3,855,181 - ECD_03658 0.45 +1.6 3,855,182 - ECD_03658 0.46 +0.7 3,855,216 + ECD_03658 0.48 +0.9 3,855,216 + ECD_03658 0.48 +0.6 3,855,217 - ECD_03658 0.48 +1.4 3,855,218 + ECD_03658 0.48 +1.1 3,855,219 - ECD_03658 0.48 +0.8 3,855,219 - ECD_03658 0.48 +2.1 3,855,342 + ECD_03658 0.58 +0.8 3,855,342 + ECD_03658 0.58 +0.7 3,855,343 - ECD_03658 0.58 +1.2 3,855,343 - ECD_03658 0.58 +1.5 3,855,359 + ECD_03658 0.60 +2.7 3,855,359 + ECD_03658 0.60 +0.6 3,855,360 - ECD_03658 0.60 +1.3 3,855,360 - ECD_03658 0.60 +1.0 3,855,360 - ECD_03658 0.60 +1.9 3,855,360 - ECD_03658 0.60 +1.6 3,855,360 - ECD_03658 0.60 +1.5 3,855,411 + ECD_03658 0.64 +0.7 3,855,411 + ECD_03658 0.64 +1.2 3,855,411 + ECD_03658 0.64 +1.9 3,855,411 + ECD_03658 0.64 +0.8 3,855,411 + ECD_03658 0.64 -0.7 3,855,412 - ECD_03658 0.64 +2.1 3,855,428 + ECD_03658 0.65 +1.4 3,855,428 + ECD_03658 0.65 +0.7 3,855,428 + ECD_03658 0.65 +3.1 3,855,429 - ECD_03658 0.65 +1.5 3,855,429 - ECD_03658 0.65 +0.8 3,855,429 - ECD_03658 0.65 +1.6 3,855,436 + ECD_03658 0.66 +1.7 3,855,437 - ECD_03658 0.66 +1.9 3,855,516 - ECD_03658 0.72 +1.0 3,855,516 - ECD_03658 0.72 +1.0 3,855,516 - ECD_03658 0.72 +0.2 3,855,540 + ECD_03658 0.74 +1.3 3,855,603 + ECD_03658 0.79 +0.7 3,855,604 - ECD_03658 0.79 +1.0 3,855,607 + ECD_03658 0.79 +1.5 3,855,607 + ECD_03658 0.79 +1.7 3,855,608 - ECD_03658 0.79 +0.9 3,855,662 + ECD_03658 0.83 +1.3 3,855,662 + ECD_03658 0.83 +1.8 3,855,663 - ECD_03658 0.84 +0.1 3,855,678 + ECD_03658 0.85 +1.3 3,855,679 - ECD_03658 0.85 +1.8 3,855,775 - +1.3 3,855,809 - +0.3 3,855,809 - +0.3 3,855,854 - +3.7 3,855,870 + +2.7 3,855,870 + +1.2 3,855,870 + +1.1 3,855,870 + +0.8 3,855,870 + +0.7 3,855,871 - +0.5 3,855,871 - +0.1 3,855,878 + +0.5 3,855,892 - -0.3 3,855,895 - -0.2 3,855,895 - -0.1 3,855,938 - -0.7 3,855,951 + -1.1 3,855,951 + -1.4 3,855,952 - +0.0 3,855,982 + -2.3 3,855,983 - -0.8 3,855,998 + -2.2 3,855,998 + -1.5 3,855,998 + -0.8 3,855,998 + -0.3 3,855,999 - -1.4 3,855,999 - -1.1 3,855,999 - -1.3 3,855,999 - -2.8 3,855,999 - -1.2 3,856,000 + -1.3 3,856,000 + +0.6 3,856,212 - ECD_03659 0.64 +0.9 3,856,288 + ECD_03659 0.87 -0.5 3,856,328 + -0.7 3,856,391 - +0.2 3,856,395 + -0.7 3,856,395 + -0.0 3,856,396 - -3.0 3,856,412 + -0.4 3,856,412 + -0.8 3,856,418 + -1.1 3,856,423 + -0.5 3,856,423 + -1.1 3,856,423 + -1.3 3,856,423 + -1.9 3,856,423 + +0.4 3,856,426 + -1.7 3,856,426 + -0.4 3,856,426 + -2.9 3,856,468 + -1.4 3,856,531 + ECD_03660 0.59 +0.3 3,856,531 + ECD_03660 0.59 -0.6 3,856,640 + -0.7
Or see this region's nucleotide sequence