Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03574 and ECD_03575 are separated by 119 nucleotides ECD_03575 and ECD_03576 overlap by 4 nucleotides ECD_03576 and ECD_03577 overlap by 17 nucleotides
ECD_03574: ECD_03574 - D-galactonate transporter, at 3,759,234 to 3,760,526
_03574
ECD_03575: ECD_03575 - D-galactonate dehydratase, at 3,760,646 to 3,761,794
_03575
ECD_03576: ECD_03576 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase, at 3,761,791 to 3,762,408
_03576
ECD_03577: ECD_03577 - 2-oxo-3-deoxygalactonate kinase, at 3,762,392 to 3,763,270
_03577
Position (kb)
3760
3761
3762 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3759.687 kb on - strand, within ECD_03574 at 3759.726 kb on + strand, within ECD_03574 at 3759.726 kb on + strand, within ECD_03574 at 3759.727 kb on - strand, within ECD_03574 at 3759.764 kb on + strand, within ECD_03574 at 3759.765 kb on - strand, within ECD_03574 at 3759.765 kb on - strand, within ECD_03574 at 3759.765 kb on - strand, within ECD_03574 at 3759.790 kb on + strand, within ECD_03574 at 3759.907 kb on + strand, within ECD_03574 at 3759.907 kb on + strand, within ECD_03574 at 3759.908 kb on - strand, within ECD_03574 at 3759.908 kb on - strand, within ECD_03574 at 3759.929 kb on + strand, within ECD_03574 at 3760.092 kb on - strand, within ECD_03574 at 3760.092 kb on - strand, within ECD_03574 at 3760.092 kb on - strand, within ECD_03574 at 3760.206 kb on + strand, within ECD_03574 at 3760.206 kb on + strand, within ECD_03574 at 3760.206 kb on + strand, within ECD_03574 at 3760.207 kb on - strand, within ECD_03574 at 3760.215 kb on + strand, within ECD_03574 at 3760.216 kb on - strand, within ECD_03574 at 3760.293 kb on + strand, within ECD_03574 at 3760.294 kb on - strand, within ECD_03574 at 3760.329 kb on + strand, within ECD_03574 at 3760.330 kb on - strand, within ECD_03574 at 3760.334 kb on + strand, within ECD_03574 at 3760.334 kb on + strand, within ECD_03574 at 3760.334 kb on + strand, within ECD_03574 at 3760.335 kb on - strand, within ECD_03574 at 3760.337 kb on - strand, within ECD_03574 at 3760.359 kb on + strand, within ECD_03574 at 3760.360 kb on - strand, within ECD_03574 at 3760.364 kb on - strand, within ECD_03574 at 3760.403 kb on + strand at 3760.441 kb on + strand at 3760.442 kb on - strand at 3760.458 kb on - strand at 3760.458 kb on - strand at 3760.460 kb on + strand at 3760.521 kb on - strand at 3760.579 kb on - strand at 3760.594 kb on - strand at 3760.604 kb on - strand at 3760.604 kb on - strand at 3760.633 kb on + strand at 3760.633 kb on + strand at 3760.634 kb on - strand at 3760.634 kb on - strand at 3760.634 kb on - strand at 3760.647 kb on + strand at 3760.658 kb on + strand at 3760.659 kb on - strand at 3760.666 kb on + strand at 3760.667 kb on - strand at 3760.667 kb on - strand at 3760.667 kb on - strand at 3760.691 kb on - strand at 3760.775 kb on - strand, within ECD_03575 at 3760.827 kb on - strand, within ECD_03575 at 3760.845 kb on + strand, within ECD_03575 at 3760.859 kb on - strand, within ECD_03575 at 3760.874 kb on + strand, within ECD_03575 at 3760.884 kb on + strand, within ECD_03575 at 3760.884 kb on + strand, within ECD_03575 at 3760.884 kb on + strand, within ECD_03575 at 3760.885 kb on - strand, within ECD_03575 at 3760.962 kb on + strand, within ECD_03575 at 3760.963 kb on - strand, within ECD_03575 at 3760.963 kb on - strand, within ECD_03575 at 3760.990 kb on - strand, within ECD_03575 at 3760.990 kb on - strand, within ECD_03575 at 3761.000 kb on - strand, within ECD_03575 at 3761.041 kb on + strand, within ECD_03575 at 3761.139 kb on + strand, within ECD_03575 at 3761.173 kb on + strand, within ECD_03575 at 3761.174 kb on - strand, within ECD_03575 at 3761.329 kb on + strand, within ECD_03575 at 3761.329 kb on + strand, within ECD_03575 at 3761.330 kb on - strand, within ECD_03575 at 3761.330 kb on - strand, within ECD_03575 at 3761.330 kb on - strand, within ECD_03575 at 3761.336 kb on + strand, within ECD_03575 at 3761.445 kb on + strand, within ECD_03575 at 3761.445 kb on + strand, within ECD_03575 at 3761.510 kb on - strand, within ECD_03575 at 3761.510 kb on - strand, within ECD_03575 at 3761.578 kb on - strand, within ECD_03575 at 3761.592 kb on + strand, within ECD_03575 at 3761.592 kb on + strand, within ECD_03575 at 3761.593 kb on - strand, within ECD_03575 at 3761.593 kb on - strand, within ECD_03575 at 3761.607 kb on - strand, within ECD_03575 at 3761.643 kb on + strand, within ECD_03575 at 3761.770 kb on - strand at 3761.770 kb on - strand at 3761.776 kb on + strand at 3761.912 kb on - strand, within ECD_03576 at 3761.999 kb on + strand, within ECD_03576 at 3761.999 kb on + strand, within ECD_03576 at 3762.000 kb on - strand, within ECD_03576 at 3762.000 kb on - strand, within ECD_03576 at 3762.214 kb on - strand, within ECD_03576 at 3762.214 kb on - strand, within ECD_03576 at 3762.360 kb on + strand at 3762.422 kb on + strand at 3762.423 kb on - strand at 3762.423 kb on - strand at 3762.425 kb on - strand at 3762.552 kb on + strand, within ECD_03577 at 3762.552 kb on + strand, within ECD_03577 at 3762.552 kb on + strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.553 kb on - strand, within ECD_03577 at 3762.672 kb on - strand, within ECD_03577 at 3762.685 kb on + strand, within ECD_03577 at 3762.685 kb on + strand, within ECD_03577 at 3762.686 kb on - strand, within ECD_03577 at 3762.686 kb on - strand, within ECD_03577 at 3762.773 kb on + strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577 at 3762.774 kb on - strand, within ECD_03577
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,759,687 - ECD_03574 0.35 -1.1 3,759,726 + ECD_03574 0.38 +0.7 3,759,726 + ECD_03574 0.38 -0.7 3,759,727 - ECD_03574 0.38 -1.6 3,759,764 + ECD_03574 0.41 -0.4 3,759,765 - ECD_03574 0.41 +0.5 3,759,765 - ECD_03574 0.41 +1.5 3,759,765 - ECD_03574 0.41 -0.7 3,759,790 + ECD_03574 0.43 +1.4 3,759,907 + ECD_03574 0.52 -0.5 3,759,907 + ECD_03574 0.52 -0.6 3,759,908 - ECD_03574 0.52 -0.3 3,759,908 - ECD_03574 0.52 -1.2 3,759,929 + ECD_03574 0.54 -0.7 3,760,092 - ECD_03574 0.66 -0.4 3,760,092 - ECD_03574 0.66 -0.7 3,760,092 - ECD_03574 0.66 -0.1 3,760,206 + ECD_03574 0.75 -1.5 3,760,206 + ECD_03574 0.75 -0.9 3,760,206 + ECD_03574 0.75 +0.8 3,760,207 - ECD_03574 0.75 -0.2 3,760,215 + ECD_03574 0.76 +0.0 3,760,216 - ECD_03574 0.76 -1.5 3,760,293 + ECD_03574 0.82 +0.2 3,760,294 - ECD_03574 0.82 -0.9 3,760,329 + ECD_03574 0.85 +0.3 3,760,330 - ECD_03574 0.85 -0.8 3,760,334 + ECD_03574 0.85 -0.7 3,760,334 + ECD_03574 0.85 +0.6 3,760,334 + ECD_03574 0.85 -0.1 3,760,335 - ECD_03574 0.85 -1.0 3,760,337 - ECD_03574 0.85 +0.7 3,760,359 + ECD_03574 0.87 -0.2 3,760,360 - ECD_03574 0.87 -1.6 3,760,364 - ECD_03574 0.87 -0.4 3,760,403 + -2.5 3,760,441 + -1.3 3,760,442 - +2.6 3,760,458 - +0.4 3,760,458 - +0.5 3,760,460 + -0.6 3,760,521 - -0.5 3,760,579 - -0.4 3,760,594 - +0.0 3,760,604 - -0.2 3,760,604 - -0.7 3,760,633 + -0.9 3,760,633 + -0.9 3,760,634 - -2.1 3,760,634 - -1.1 3,760,634 - -0.7 3,760,647 + -0.2 3,760,658 + -0.4 3,760,659 - +0.3 3,760,666 + +0.3 3,760,667 - -0.2 3,760,667 - +0.7 3,760,667 - +0.0 3,760,691 - +0.4 3,760,775 - ECD_03575 0.11 -0.1 3,760,827 - ECD_03575 0.16 -1.6 3,760,845 + ECD_03575 0.17 +0.3 3,760,859 - ECD_03575 0.19 -1.9 3,760,874 + ECD_03575 0.20 -1.0 3,760,884 + ECD_03575 0.21 -1.1 3,760,884 + ECD_03575 0.21 -0.7 3,760,884 + ECD_03575 0.21 +0.7 3,760,885 - ECD_03575 0.21 -1.4 3,760,962 + ECD_03575 0.28 +0.2 3,760,963 - ECD_03575 0.28 +0.2 3,760,963 - ECD_03575 0.28 -0.4 3,760,990 - ECD_03575 0.30 -1.9 3,760,990 - ECD_03575 0.30 +0.4 3,761,000 - ECD_03575 0.31 -1.4 3,761,041 + ECD_03575 0.34 -0.0 3,761,139 + ECD_03575 0.43 +0.2 3,761,173 + ECD_03575 0.46 -0.6 3,761,174 - ECD_03575 0.46 -1.0 3,761,329 + ECD_03575 0.59 -1.9 3,761,329 + ECD_03575 0.59 -0.1 3,761,330 - ECD_03575 0.60 -1.2 3,761,330 - ECD_03575 0.60 +2.0 3,761,330 - ECD_03575 0.60 +0.1 3,761,336 + ECD_03575 0.60 -0.3 3,761,445 + ECD_03575 0.70 +0.6 3,761,445 + ECD_03575 0.70 +0.5 3,761,510 - ECD_03575 0.75 +0.4 3,761,510 - ECD_03575 0.75 -1.0 3,761,578 - ECD_03575 0.81 -2.1 3,761,592 + ECD_03575 0.82 -2.7 3,761,592 + ECD_03575 0.82 -1.1 3,761,593 - ECD_03575 0.82 +0.0 3,761,593 - ECD_03575 0.82 -0.6 3,761,607 - ECD_03575 0.84 -1.0 3,761,643 + ECD_03575 0.87 -0.9 3,761,770 - -0.1 3,761,770 - +0.0 3,761,776 + -0.5 3,761,912 - ECD_03576 0.20 +0.6 3,761,999 + ECD_03576 0.34 -0.8 3,761,999 + ECD_03576 0.34 +0.3 3,762,000 - ECD_03576 0.34 +0.7 3,762,000 - ECD_03576 0.34 -1.1 3,762,214 - ECD_03576 0.68 -0.4 3,762,214 - ECD_03576 0.68 +0.2 3,762,360 + -1.4 3,762,422 + -1.5 3,762,423 - -1.1 3,762,423 - -0.8 3,762,425 - -0.4 3,762,552 + ECD_03577 0.18 +0.9 3,762,552 + ECD_03577 0.18 -1.2 3,762,552 + ECD_03577 0.18 +0.1 3,762,553 - ECD_03577 0.18 -2.3 3,762,553 - ECD_03577 0.18 -0.2 3,762,553 - ECD_03577 0.18 +0.1 3,762,553 - ECD_03577 0.18 -0.1 3,762,672 - ECD_03577 0.32 -1.6 3,762,685 + ECD_03577 0.33 -0.9 3,762,685 + ECD_03577 0.33 -0.3 3,762,686 - ECD_03577 0.33 -1.0 3,762,686 - ECD_03577 0.33 -0.7 3,762,773 + ECD_03577 0.43 +0.5 3,762,774 - ECD_03577 0.43 -0.6 3,762,774 - ECD_03577 0.43 -0.5 3,762,774 - ECD_03577 0.43 -0.8
Or see this region's nucleotide sequence