Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03527 and ECD_03530 are separated by 566 nucleotides ECD_03530 and ECD_03531 are separated by 27 nucleotides ECD_03531 and ECD_03532 are separated by 156 nucleotides ECD_03532 and ECD_03533 are separated by 64 nucleotides ECD_03533 and ECD_03534 are separated by 42 nucleotides
ECD_03527: ECD_03527 - hypothetical protein, at 3,715,525 to 3,715,827
_03527
ECD_03530: ECD_03530 - hypothetical protein, at 3,716,394 to 3,716,648
_03530
ECD_03531: ECD_03531 - hypothetical protein, at 3,716,676 to 3,720,173
_03531
ECD_03532: ECD_03532 - hypothetical protein, at 3,720,330 to 3,720,743
_03532
ECD_03533: ECD_03533 - hypothetical protein, at 3,720,808 to 3,720,990
_03533
ECD_03534: ECD_03534 - hypothetical protein, at 3,721,033 to 3,721,179
_03534
Position (kb)
3716
3717
3718
3719
3720
3721 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3715.714 kb on + strand, within ECD_03527 at 3715.715 kb on - strand, within ECD_03527 at 3715.718 kb on + strand, within ECD_03527 at 3715.719 kb on - strand, within ECD_03527 at 3715.719 kb on - strand, within ECD_03527 at 3715.749 kb on + strand, within ECD_03527 at 3715.750 kb on - strand, within ECD_03527 at 3715.785 kb on - strand, within ECD_03527 at 3715.791 kb on - strand, within ECD_03527 at 3715.804 kb on - strand at 3715.816 kb on - strand at 3715.826 kb on - strand at 3715.831 kb on + strand at 3715.832 kb on - strand at 3715.832 kb on - strand at 3715.832 kb on - strand at 3715.832 kb on - strand at 3715.907 kb on - strand at 3715.942 kb on + strand at 3715.948 kb on + strand at 3716.017 kb on + strand at 3716.018 kb on - strand at 3716.049 kb on - strand at 3716.119 kb on + strand at 3716.120 kb on - strand at 3716.125 kb on + strand at 3716.125 kb on + strand at 3716.206 kb on - strand at 3716.249 kb on - strand at 3716.276 kb on + strand at 3716.277 kb on - strand at 3716.338 kb on - strand at 3716.391 kb on - strand at 3716.400 kb on + strand at 3716.494 kb on + strand, within ECD_03530 at 3716.875 kb on + strand at 3717.018 kb on - strand at 3717.163 kb on + strand, within ECD_03531 at 3717.804 kb on - strand, within ECD_03531 at 3717.907 kb on + strand, within ECD_03531 at 3717.907 kb on + strand, within ECD_03531 at 3718.237 kb on + strand, within ECD_03531 at 3718.265 kb on + strand, within ECD_03531 at 3718.297 kb on + strand, within ECD_03531 at 3718.402 kb on + strand, within ECD_03531 at 3718.402 kb on + strand, within ECD_03531 at 3718.403 kb on - strand, within ECD_03531 at 3718.421 kb on + strand, within ECD_03531 at 3718.424 kb on - strand, within ECD_03531 at 3718.523 kb on + strand, within ECD_03531 at 3718.527 kb on + strand, within ECD_03531 at 3718.527 kb on + strand, within ECD_03531 at 3718.528 kb on - strand, within ECD_03531 at 3718.528 kb on - strand, within ECD_03531 at 3718.537 kb on + strand, within ECD_03531 at 3718.550 kb on + strand, within ECD_03531 at 3718.550 kb on + strand, within ECD_03531 at 3718.550 kb on + strand, within ECD_03531 at 3718.577 kb on + strand, within ECD_03531 at 3718.587 kb on + strand, within ECD_03531 at 3718.661 kb on + strand, within ECD_03531 at 3718.662 kb on - strand, within ECD_03531 at 3718.662 kb on - strand, within ECD_03531 at 3718.664 kb on + strand, within ECD_03531 at 3718.664 kb on + strand, within ECD_03531 at 3718.793 kb on + strand, within ECD_03531 at 3718.794 kb on - strand, within ECD_03531 at 3718.794 kb on - strand, within ECD_03531 at 3718.796 kb on - strand, within ECD_03531 at 3718.808 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.812 kb on + strand, within ECD_03531 at 3718.813 kb on - strand, within ECD_03531 at 3718.813 kb on - strand, within ECD_03531 at 3718.813 kb on - strand, within ECD_03531 at 3718.813 kb on - strand, within ECD_03531 at 3718.813 kb on - strand, within ECD_03531 at 3718.813 kb on - strand, within ECD_03531 at 3718.814 kb on + strand, within ECD_03531 at 3718.814 kb on + strand, within ECD_03531 at 3718.814 kb on + strand, within ECD_03531 at 3718.815 kb on - strand, within ECD_03531 at 3718.815 kb on - strand, within ECD_03531 at 3718.815 kb on - strand, within ECD_03531 at 3718.815 kb on - strand, within ECD_03531 at 3718.815 kb on - strand, within ECD_03531 at 3718.815 kb on - strand, within ECD_03531 at 3718.826 kb on + strand, within ECD_03531 at 3718.826 kb on + strand, within ECD_03531 at 3718.826 kb on + strand, within ECD_03531 at 3718.827 kb on - strand, within ECD_03531 at 3718.827 kb on - strand, within ECD_03531 at 3718.828 kb on + strand, within ECD_03531 at 3718.828 kb on + strand, within ECD_03531 at 3718.828 kb on + strand, within ECD_03531 at 3718.828 kb on + strand, within ECD_03531 at 3718.828 kb on + strand, within ECD_03531 at 3718.848 kb on + strand, within ECD_03531 at 3718.848 kb on + strand, within ECD_03531 at 3718.849 kb on - strand, within ECD_03531 at 3718.849 kb on - strand, within ECD_03531 at 3718.868 kb on + strand, within ECD_03531 at 3718.869 kb on - strand, within ECD_03531 at 3718.869 kb on - strand, within ECD_03531 at 3718.869 kb on - strand, within ECD_03531 at 3718.869 kb on - strand, within ECD_03531 at 3719.061 kb on - strand, within ECD_03531 at 3719.061 kb on - strand, within ECD_03531 at 3719.064 kb on - strand, within ECD_03531 at 3719.083 kb on - strand, within ECD_03531 at 3719.083 kb on - strand, within ECD_03531 at 3719.086 kb on + strand, within ECD_03531 at 3719.087 kb on - strand, within ECD_03531 at 3719.117 kb on + strand, within ECD_03531 at 3719.124 kb on + strand, within ECD_03531 at 3719.210 kb on + strand, within ECD_03531 at 3719.211 kb on - strand, within ECD_03531 at 3719.211 kb on - strand, within ECD_03531 at 3719.214 kb on + strand, within ECD_03531 at 3719.214 kb on + strand, within ECD_03531 at 3719.214 kb on + strand, within ECD_03531 at 3719.214 kb on + strand, within ECD_03531 at 3719.214 kb on + strand, within ECD_03531 at 3719.215 kb on - strand, within ECD_03531 at 3719.215 kb on - strand, within ECD_03531 at 3719.226 kb on - strand, within ECD_03531 at 3719.286 kb on + strand, within ECD_03531 at 3719.287 kb on - strand, within ECD_03531 at 3719.334 kb on + strand, within ECD_03531 at 3719.335 kb on - strand, within ECD_03531 at 3719.335 kb on - strand, within ECD_03531 at 3719.335 kb on - strand, within ECD_03531 at 3719.336 kb on + strand, within ECD_03531 at 3719.373 kb on - strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.401 kb on - strand, within ECD_03531 at 3719.401 kb on - strand, within ECD_03531 at 3719.423 kb on + strand, within ECD_03531 at 3719.424 kb on - strand, within ECD_03531 at 3719.424 kb on - strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.426 kb on - strand, within ECD_03531 at 3719.463 kb on - strand, within ECD_03531 at 3719.463 kb on - strand, within ECD_03531 at 3719.469 kb on - strand, within ECD_03531 at 3719.492 kb on + strand, within ECD_03531 at 3719.492 kb on + strand, within ECD_03531 at 3719.495 kb on + strand, within ECD_03531 at 3719.495 kb on + strand, within ECD_03531 at 3719.501 kb on + strand, within ECD_03531 at 3719.550 kb on + strand, within ECD_03531 at 3719.566 kb on - strand, within ECD_03531 at 3719.577 kb on + strand, within ECD_03531 at 3719.577 kb on + strand, within ECD_03531 at 3719.607 kb on + strand, within ECD_03531 at 3719.607 kb on + strand, within ECD_03531 at 3719.608 kb on - strand, within ECD_03531 at 3719.608 kb on - strand, within ECD_03531 at 3719.608 kb on - strand, within ECD_03531 at 3719.648 kb on + strand, within ECD_03531 at 3719.648 kb on + strand, within ECD_03531 at 3719.648 kb on + strand, within ECD_03531 at 3719.650 kb on + strand, within ECD_03531 at 3719.650 kb on + strand, within ECD_03531 at 3719.751 kb on + strand, within ECD_03531 at 3719.752 kb on - strand, within ECD_03531 at 3719.824 kb on - strand at 3719.999 kb on + strand at 3720.137 kb on + strand at 3720.450 kb on + strand, within ECD_03532 at 3720.450 kb on + strand, within ECD_03532 at 3720.499 kb on + strand, within ECD_03532 at 3720.500 kb on - strand, within ECD_03532 at 3720.573 kb on + strand, within ECD_03532 at 3721.061 kb on + strand, within ECD_03534 at 3721.071 kb on + strand, within ECD_03534 at 3721.113 kb on + strand, within ECD_03534 at 3721.162 kb on + strand, within ECD_03534
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,715,714 + ECD_03527 0.62 -0.1 3,715,715 - ECD_03527 0.63 +0.3 3,715,718 + ECD_03527 0.64 +2.0 3,715,719 - ECD_03527 0.64 +0.5 3,715,719 - ECD_03527 0.64 +1.2 3,715,749 + ECD_03527 0.74 +1.1 3,715,750 - ECD_03527 0.74 +0.8 3,715,785 - ECD_03527 0.86 +1.9 3,715,791 - ECD_03527 0.88 +1.2 3,715,804 - -0.7 3,715,816 - +0.6 3,715,826 - +1.3 3,715,831 + -0.6 3,715,832 - -0.2 3,715,832 - +0.8 3,715,832 - +1.0 3,715,832 - +0.9 3,715,907 - +0.9 3,715,942 + +0.9 3,715,948 + +0.6 3,716,017 + +0.7 3,716,018 - +1.1 3,716,049 - -1.8 3,716,119 + +0.6 3,716,120 - +2.9 3,716,125 + +1.1 3,716,125 + +0.6 3,716,206 - -0.2 3,716,249 - +1.5 3,716,276 + +1.0 3,716,277 - -0.7 3,716,338 - +0.1 3,716,391 - +1.9 3,716,400 + +1.0 3,716,494 + ECD_03530 0.39 +0.8 3,716,875 + +1.7 3,717,018 - +1.7 3,717,163 + ECD_03531 0.14 +1.7 3,717,804 - ECD_03531 0.32 +2.0 3,717,907 + ECD_03531 0.35 +1.2 3,717,907 + ECD_03531 0.35 +1.7 3,718,237 + ECD_03531 0.45 +1.6 3,718,265 + ECD_03531 0.45 +1.3 3,718,297 + ECD_03531 0.46 +1.0 3,718,402 + ECD_03531 0.49 +1.6 3,718,402 + ECD_03531 0.49 -0.5 3,718,403 - ECD_03531 0.49 +1.7 3,718,421 + ECD_03531 0.50 +1.6 3,718,424 - ECD_03531 0.50 +2.0 3,718,523 + ECD_03531 0.53 +0.5 3,718,527 + ECD_03531 0.53 +0.4 3,718,527 + ECD_03531 0.53 +1.1 3,718,528 - ECD_03531 0.53 +1.9 3,718,528 - ECD_03531 0.53 +1.3 3,718,537 + ECD_03531 0.53 +1.1 3,718,550 + ECD_03531 0.54 +1.8 3,718,550 + ECD_03531 0.54 +1.3 3,718,550 + ECD_03531 0.54 +0.6 3,718,577 + ECD_03531 0.54 +0.6 3,718,587 + ECD_03531 0.55 +0.9 3,718,661 + ECD_03531 0.57 +1.4 3,718,662 - ECD_03531 0.57 +1.0 3,718,662 - ECD_03531 0.57 +1.3 3,718,664 + ECD_03531 0.57 +1.8 3,718,664 + ECD_03531 0.57 +1.0 3,718,793 + ECD_03531 0.61 +1.4 3,718,794 - ECD_03531 0.61 +1.4 3,718,794 - ECD_03531 0.61 +0.5 3,718,796 - ECD_03531 0.61 +1.4 3,718,808 + ECD_03531 0.61 +1.2 3,718,812 + ECD_03531 0.61 +1.0 3,718,812 + ECD_03531 0.61 +3.0 3,718,812 + ECD_03531 0.61 +1.4 3,718,812 + ECD_03531 0.61 +1.6 3,718,812 + ECD_03531 0.61 +1.7 3,718,812 + ECD_03531 0.61 +1.9 3,718,812 + ECD_03531 0.61 +0.9 3,718,812 + ECD_03531 0.61 +0.9 3,718,813 - ECD_03531 0.61 +2.1 3,718,813 - ECD_03531 0.61 +1.1 3,718,813 - ECD_03531 0.61 +1.4 3,718,813 - ECD_03531 0.61 +1.9 3,718,813 - ECD_03531 0.61 +0.6 3,718,813 - ECD_03531 0.61 +1.4 3,718,814 + ECD_03531 0.61 +1.4 3,718,814 + ECD_03531 0.61 +1.2 3,718,814 + ECD_03531 0.61 +1.9 3,718,815 - ECD_03531 0.61 +1.4 3,718,815 - ECD_03531 0.61 +1.3 3,718,815 - ECD_03531 0.61 +1.4 3,718,815 - ECD_03531 0.61 +1.5 3,718,815 - ECD_03531 0.61 +1.1 3,718,815 - ECD_03531 0.61 +0.5 3,718,826 + ECD_03531 0.61 +1.4 3,718,826 + ECD_03531 0.61 +2.2 3,718,826 + ECD_03531 0.61 +1.6 3,718,827 - ECD_03531 0.61 +1.4 3,718,827 - ECD_03531 0.61 +0.5 3,718,828 + ECD_03531 0.62 +1.5 3,718,828 + ECD_03531 0.62 +1.6 3,718,828 + ECD_03531 0.62 +1.1 3,718,828 + ECD_03531 0.62 +0.9 3,718,828 + ECD_03531 0.62 +1.7 3,718,848 + ECD_03531 0.62 +1.0 3,718,848 + ECD_03531 0.62 +2.3 3,718,849 - ECD_03531 0.62 +1.9 3,718,849 - ECD_03531 0.62 +1.2 3,718,868 + ECD_03531 0.63 +1.1 3,718,869 - ECD_03531 0.63 +0.4 3,718,869 - ECD_03531 0.63 +1.4 3,718,869 - ECD_03531 0.63 +1.2 3,718,869 - ECD_03531 0.63 +1.6 3,719,061 - ECD_03531 0.68 +1.7 3,719,061 - ECD_03531 0.68 +1.7 3,719,064 - ECD_03531 0.68 +1.7 3,719,083 - ECD_03531 0.69 +1.3 3,719,083 - ECD_03531 0.69 +1.3 3,719,086 + ECD_03531 0.69 +2.7 3,719,087 - ECD_03531 0.69 +0.7 3,719,117 + ECD_03531 0.70 +1.1 3,719,124 + ECD_03531 0.70 +2.3 3,719,210 + ECD_03531 0.72 +0.8 3,719,211 - ECD_03531 0.72 +1.1 3,719,211 - ECD_03531 0.72 +1.6 3,719,214 + ECD_03531 0.73 +0.7 3,719,214 + ECD_03531 0.73 +0.9 3,719,214 + ECD_03531 0.73 +1.7 3,719,214 + ECD_03531 0.73 +0.7 3,719,214 + ECD_03531 0.73 +1.4 3,719,215 - ECD_03531 0.73 +1.5 3,719,215 - ECD_03531 0.73 +2.0 3,719,226 - ECD_03531 0.73 +3.3 3,719,286 + ECD_03531 0.75 +1.1 3,719,287 - ECD_03531 0.75 +0.9 3,719,334 + ECD_03531 0.76 +1.4 3,719,335 - ECD_03531 0.76 +2.0 3,719,335 - ECD_03531 0.76 +0.5 3,719,335 - ECD_03531 0.76 +1.3 3,719,336 + ECD_03531 0.76 +1.9 3,719,373 - ECD_03531 0.77 +1.6 3,719,400 + ECD_03531 0.78 +1.3 3,719,400 + ECD_03531 0.78 +2.0 3,719,400 + ECD_03531 0.78 +0.4 3,719,400 + ECD_03531 0.78 +0.5 3,719,400 + ECD_03531 0.78 +1.2 3,719,400 + ECD_03531 0.78 +1.1 3,719,401 - ECD_03531 0.78 +1.6 3,719,401 - ECD_03531 0.78 +1.4 3,719,423 + ECD_03531 0.79 +0.4 3,719,424 - ECD_03531 0.79 +1.0 3,719,424 - ECD_03531 0.79 +1.2 3,719,425 + ECD_03531 0.79 +1.0 3,719,425 + ECD_03531 0.79 +1.6 3,719,425 + ECD_03531 0.79 +1.5 3,719,425 + ECD_03531 0.79 +2.8 3,719,425 + ECD_03531 0.79 +1.2 3,719,425 + ECD_03531 0.79 +0.1 3,719,425 + ECD_03531 0.79 +1.2 3,719,425 + ECD_03531 0.79 +1.1 3,719,425 + ECD_03531 0.79 +0.9 3,719,425 + ECD_03531 0.79 +0.4 3,719,426 - ECD_03531 0.79 +2.4 3,719,463 - ECD_03531 0.80 -0.3 3,719,463 - ECD_03531 0.80 +1.3 3,719,469 - ECD_03531 0.80 +1.6 3,719,492 + ECD_03531 0.81 +1.5 3,719,492 + ECD_03531 0.81 +1.4 3,719,495 + ECD_03531 0.81 +1.0 3,719,495 + ECD_03531 0.81 +1.2 3,719,501 + ECD_03531 0.81 +1.8 3,719,550 + ECD_03531 0.82 +0.5 3,719,566 - ECD_03531 0.83 +1.4 3,719,577 + ECD_03531 0.83 +0.8 3,719,577 + ECD_03531 0.83 +0.6 3,719,607 + ECD_03531 0.84 +2.0 3,719,607 + ECD_03531 0.84 +0.7 3,719,608 - ECD_03531 0.84 +1.4 3,719,608 - ECD_03531 0.84 +1.4 3,719,608 - ECD_03531 0.84 +1.9 3,719,648 + ECD_03531 0.85 +1.1 3,719,648 + ECD_03531 0.85 +2.3 3,719,648 + ECD_03531 0.85 +1.5 3,719,650 + ECD_03531 0.85 +1.2 3,719,650 + ECD_03531 0.85 +1.2 3,719,751 + ECD_03531 0.88 +1.0 3,719,752 - ECD_03531 0.88 +1.4 3,719,824 - +1.7 3,719,999 + +0.1 3,720,137 + +1.7 3,720,450 + ECD_03532 0.29 -0.2 3,720,450 + ECD_03532 0.29 +0.1 3,720,499 + ECD_03532 0.41 +0.4 3,720,500 - ECD_03532 0.41 +0.7 3,720,573 + ECD_03532 0.59 +0.7 3,721,061 + ECD_03534 0.19 +1.5 3,721,071 + ECD_03534 0.26 +0.7 3,721,113 + ECD_03534 0.54 +1.1 3,721,162 + ECD_03534 0.88 +0.6
Or see this region's nucleotide sequence