Strain Fitness in Escherichia coli BL21 around ECD_03531

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03527 and ECD_03530 are separated by 566 nucleotidesECD_03530 and ECD_03531 are separated by 27 nucleotidesECD_03531 and ECD_03532 are separated by 156 nucleotidesECD_03532 and ECD_03533 are separated by 64 nucleotidesECD_03533 and ECD_03534 are separated by 42 nucleotides ECD_03527: ECD_03527 - hypothetical protein, at 3,715,525 to 3,715,827 _03527 ECD_03530: ECD_03530 - hypothetical protein, at 3,716,394 to 3,716,648 _03530 ECD_03531: ECD_03531 - hypothetical protein, at 3,716,676 to 3,720,173 _03531 ECD_03532: ECD_03532 - hypothetical protein, at 3,720,330 to 3,720,743 _03532 ECD_03533: ECD_03533 - hypothetical protein, at 3,720,808 to 3,720,990 _03533 ECD_03534: ECD_03534 - hypothetical protein, at 3,721,033 to 3,721,179 _03534 Position (kb) 3716 3717 3718 3719 3720 3721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3715.714 kb on + strand, within ECD_03527at 3715.715 kb on - strand, within ECD_03527at 3715.718 kb on + strand, within ECD_03527at 3715.719 kb on - strand, within ECD_03527at 3715.719 kb on - strand, within ECD_03527at 3715.749 kb on + strand, within ECD_03527at 3715.750 kb on - strand, within ECD_03527at 3715.785 kb on - strand, within ECD_03527at 3715.791 kb on - strand, within ECD_03527at 3715.804 kb on - strandat 3715.816 kb on - strandat 3715.826 kb on - strandat 3715.831 kb on + strandat 3715.832 kb on - strandat 3715.832 kb on - strandat 3715.832 kb on - strandat 3715.832 kb on - strandat 3715.907 kb on - strandat 3715.942 kb on + strandat 3715.948 kb on + strandat 3716.017 kb on + strandat 3716.018 kb on - strandat 3716.049 kb on - strandat 3716.119 kb on + strandat 3716.120 kb on - strandat 3716.125 kb on + strandat 3716.125 kb on + strandat 3716.206 kb on - strandat 3716.249 kb on - strandat 3716.276 kb on + strandat 3716.277 kb on - strandat 3716.338 kb on - strandat 3716.391 kb on - strandat 3716.400 kb on + strandat 3716.494 kb on + strand, within ECD_03530at 3716.875 kb on + strandat 3717.018 kb on - strandat 3717.163 kb on + strand, within ECD_03531at 3717.804 kb on - strand, within ECD_03531at 3717.907 kb on + strand, within ECD_03531at 3717.907 kb on + strand, within ECD_03531at 3718.237 kb on + strand, within ECD_03531at 3718.265 kb on + strand, within ECD_03531at 3718.297 kb on + strand, within ECD_03531at 3718.402 kb on + strand, within ECD_03531at 3718.402 kb on + strand, within ECD_03531at 3718.403 kb on - strand, within ECD_03531at 3718.421 kb on + strand, within ECD_03531at 3718.424 kb on - strand, within ECD_03531at 3718.523 kb on + strand, within ECD_03531at 3718.527 kb on + strand, within ECD_03531at 3718.527 kb on + strand, within ECD_03531at 3718.528 kb on - strand, within ECD_03531at 3718.528 kb on - strand, within ECD_03531at 3718.537 kb on + strand, within ECD_03531at 3718.550 kb on + strand, within ECD_03531at 3718.550 kb on + strand, within ECD_03531at 3718.550 kb on + strand, within ECD_03531at 3718.577 kb on + strand, within ECD_03531at 3718.587 kb on + strand, within ECD_03531at 3718.661 kb on + strand, within ECD_03531at 3718.662 kb on - strand, within ECD_03531at 3718.662 kb on - strand, within ECD_03531at 3718.664 kb on + strand, within ECD_03531at 3718.664 kb on + strand, within ECD_03531at 3718.793 kb on + strand, within ECD_03531at 3718.794 kb on - strand, within ECD_03531at 3718.794 kb on - strand, within ECD_03531at 3718.796 kb on - strand, within ECD_03531at 3718.808 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.812 kb on + strand, within ECD_03531at 3718.813 kb on - strand, within ECD_03531at 3718.813 kb on - strand, within ECD_03531at 3718.813 kb on - strand, within ECD_03531at 3718.813 kb on - strand, within ECD_03531at 3718.813 kb on - strand, within ECD_03531at 3718.813 kb on - strand, within ECD_03531at 3718.814 kb on + strand, within ECD_03531at 3718.814 kb on + strand, within ECD_03531at 3718.814 kb on + strand, within ECD_03531at 3718.815 kb on - strand, within ECD_03531at 3718.815 kb on - strand, within ECD_03531at 3718.815 kb on - strand, within ECD_03531at 3718.815 kb on - strand, within ECD_03531at 3718.815 kb on - strand, within ECD_03531at 3718.815 kb on - strand, within ECD_03531at 3718.826 kb on + strand, within ECD_03531at 3718.826 kb on + strand, within ECD_03531at 3718.826 kb on + strand, within ECD_03531at 3718.827 kb on - strand, within ECD_03531at 3718.827 kb on - strand, within ECD_03531at 3718.828 kb on + strand, within ECD_03531at 3718.828 kb on + strand, within ECD_03531at 3718.828 kb on + strand, within ECD_03531at 3718.828 kb on + strand, within ECD_03531at 3718.828 kb on + strand, within ECD_03531at 3718.848 kb on + strand, within ECD_03531at 3718.848 kb on + strand, within ECD_03531at 3718.849 kb on - strand, within ECD_03531at 3718.849 kb on - strand, within ECD_03531at 3718.868 kb on + strand, within ECD_03531at 3718.869 kb on - strand, within ECD_03531at 3718.869 kb on - strand, within ECD_03531at 3718.869 kb on - strand, within ECD_03531at 3718.869 kb on - strand, within ECD_03531at 3719.061 kb on - strand, within ECD_03531at 3719.061 kb on - strand, within ECD_03531at 3719.064 kb on - strand, within ECD_03531at 3719.083 kb on - strand, within ECD_03531at 3719.083 kb on - strand, within ECD_03531at 3719.086 kb on + strand, within ECD_03531at 3719.087 kb on - strand, within ECD_03531at 3719.117 kb on + strand, within ECD_03531at 3719.124 kb on + strand, within ECD_03531at 3719.210 kb on + strand, within ECD_03531at 3719.211 kb on - strand, within ECD_03531at 3719.211 kb on - strand, within ECD_03531at 3719.214 kb on + strand, within ECD_03531at 3719.214 kb on + strand, within ECD_03531at 3719.214 kb on + strand, within ECD_03531at 3719.214 kb on + strand, within ECD_03531at 3719.214 kb on + strand, within ECD_03531at 3719.215 kb on - strand, within ECD_03531at 3719.215 kb on - strand, within ECD_03531at 3719.226 kb on - strand, within ECD_03531at 3719.286 kb on + strand, within ECD_03531at 3719.287 kb on - strand, within ECD_03531at 3719.334 kb on + strand, within ECD_03531at 3719.335 kb on - strand, within ECD_03531at 3719.335 kb on - strand, within ECD_03531at 3719.335 kb on - strand, within ECD_03531at 3719.336 kb on + strand, within ECD_03531at 3719.373 kb on - strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.401 kb on - strand, within ECD_03531at 3719.401 kb on - strand, within ECD_03531at 3719.423 kb on + strand, within ECD_03531at 3719.424 kb on - strand, within ECD_03531at 3719.424 kb on - strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.426 kb on - strand, within ECD_03531at 3719.463 kb on - strand, within ECD_03531at 3719.463 kb on - strand, within ECD_03531at 3719.469 kb on - strand, within ECD_03531at 3719.492 kb on + strand, within ECD_03531at 3719.492 kb on + strand, within ECD_03531at 3719.495 kb on + strand, within ECD_03531at 3719.495 kb on + strand, within ECD_03531at 3719.501 kb on + strand, within ECD_03531at 3719.550 kb on + strand, within ECD_03531at 3719.566 kb on - strand, within ECD_03531at 3719.577 kb on + strand, within ECD_03531at 3719.577 kb on + strand, within ECD_03531at 3719.607 kb on + strand, within ECD_03531at 3719.607 kb on + strand, within ECD_03531at 3719.608 kb on - strand, within ECD_03531at 3719.608 kb on - strand, within ECD_03531at 3719.608 kb on - strand, within ECD_03531at 3719.648 kb on + strand, within ECD_03531at 3719.648 kb on + strand, within ECD_03531at 3719.648 kb on + strand, within ECD_03531at 3719.650 kb on + strand, within ECD_03531at 3719.650 kb on + strand, within ECD_03531at 3719.751 kb on + strand, within ECD_03531at 3719.752 kb on - strand, within ECD_03531at 3719.824 kb on - strandat 3719.999 kb on + strandat 3720.137 kb on + strandat 3720.450 kb on + strand, within ECD_03532at 3720.450 kb on + strand, within ECD_03532at 3720.499 kb on + strand, within ECD_03532at 3720.500 kb on - strand, within ECD_03532at 3720.573 kb on + strand, within ECD_03532at 3721.061 kb on + strand, within ECD_03534at 3721.071 kb on + strand, within ECD_03534at 3721.113 kb on + strand, within ECD_03534at 3721.162 kb on + strand, within ECD_03534

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,715,714 + ECD_03527 0.62 -0.1
3,715,715 - ECD_03527 0.63 +0.3
3,715,718 + ECD_03527 0.64 +2.0
3,715,719 - ECD_03527 0.64 +0.5
3,715,719 - ECD_03527 0.64 +1.2
3,715,749 + ECD_03527 0.74 +1.1
3,715,750 - ECD_03527 0.74 +0.8
3,715,785 - ECD_03527 0.86 +1.9
3,715,791 - ECD_03527 0.88 +1.2
3,715,804 - -0.7
3,715,816 - +0.6
3,715,826 - +1.3
3,715,831 + -0.6
3,715,832 - -0.2
3,715,832 - +0.8
3,715,832 - +1.0
3,715,832 - +0.9
3,715,907 - +0.9
3,715,942 + +0.9
3,715,948 + +0.6
3,716,017 + +0.7
3,716,018 - +1.1
3,716,049 - -1.8
3,716,119 + +0.6
3,716,120 - +2.9
3,716,125 + +1.1
3,716,125 + +0.6
3,716,206 - -0.2
3,716,249 - +1.5
3,716,276 + +1.0
3,716,277 - -0.7
3,716,338 - +0.1
3,716,391 - +1.9
3,716,400 + +1.0
3,716,494 + ECD_03530 0.39 +0.8
3,716,875 + +1.7
3,717,018 - +1.7
3,717,163 + ECD_03531 0.14 +1.7
3,717,804 - ECD_03531 0.32 +2.0
3,717,907 + ECD_03531 0.35 +1.2
3,717,907 + ECD_03531 0.35 +1.7
3,718,237 + ECD_03531 0.45 +1.6
3,718,265 + ECD_03531 0.45 +1.3
3,718,297 + ECD_03531 0.46 +1.0
3,718,402 + ECD_03531 0.49 +1.6
3,718,402 + ECD_03531 0.49 -0.5
3,718,403 - ECD_03531 0.49 +1.7
3,718,421 + ECD_03531 0.50 +1.6
3,718,424 - ECD_03531 0.50 +2.0
3,718,523 + ECD_03531 0.53 +0.5
3,718,527 + ECD_03531 0.53 +0.4
3,718,527 + ECD_03531 0.53 +1.1
3,718,528 - ECD_03531 0.53 +1.9
3,718,528 - ECD_03531 0.53 +1.3
3,718,537 + ECD_03531 0.53 +1.1
3,718,550 + ECD_03531 0.54 +1.8
3,718,550 + ECD_03531 0.54 +1.3
3,718,550 + ECD_03531 0.54 +0.6
3,718,577 + ECD_03531 0.54 +0.6
3,718,587 + ECD_03531 0.55 +0.9
3,718,661 + ECD_03531 0.57 +1.4
3,718,662 - ECD_03531 0.57 +1.0
3,718,662 - ECD_03531 0.57 +1.3
3,718,664 + ECD_03531 0.57 +1.8
3,718,664 + ECD_03531 0.57 +1.0
3,718,793 + ECD_03531 0.61 +1.4
3,718,794 - ECD_03531 0.61 +1.4
3,718,794 - ECD_03531 0.61 +0.5
3,718,796 - ECD_03531 0.61 +1.4
3,718,808 + ECD_03531 0.61 +1.2
3,718,812 + ECD_03531 0.61 +1.0
3,718,812 + ECD_03531 0.61 +3.0
3,718,812 + ECD_03531 0.61 +1.4
3,718,812 + ECD_03531 0.61 +1.6
3,718,812 + ECD_03531 0.61 +1.7
3,718,812 + ECD_03531 0.61 +1.9
3,718,812 + ECD_03531 0.61 +0.9
3,718,812 + ECD_03531 0.61 +0.9
3,718,813 - ECD_03531 0.61 +2.1
3,718,813 - ECD_03531 0.61 +1.1
3,718,813 - ECD_03531 0.61 +1.4
3,718,813 - ECD_03531 0.61 +1.9
3,718,813 - ECD_03531 0.61 +0.6
3,718,813 - ECD_03531 0.61 +1.4
3,718,814 + ECD_03531 0.61 +1.4
3,718,814 + ECD_03531 0.61 +1.2
3,718,814 + ECD_03531 0.61 +1.9
3,718,815 - ECD_03531 0.61 +1.4
3,718,815 - ECD_03531 0.61 +1.3
3,718,815 - ECD_03531 0.61 +1.4
3,718,815 - ECD_03531 0.61 +1.5
3,718,815 - ECD_03531 0.61 +1.1
3,718,815 - ECD_03531 0.61 +0.5
3,718,826 + ECD_03531 0.61 +1.4
3,718,826 + ECD_03531 0.61 +2.2
3,718,826 + ECD_03531 0.61 +1.6
3,718,827 - ECD_03531 0.61 +1.4
3,718,827 - ECD_03531 0.61 +0.5
3,718,828 + ECD_03531 0.62 +1.5
3,718,828 + ECD_03531 0.62 +1.6
3,718,828 + ECD_03531 0.62 +1.1
3,718,828 + ECD_03531 0.62 +0.9
3,718,828 + ECD_03531 0.62 +1.7
3,718,848 + ECD_03531 0.62 +1.0
3,718,848 + ECD_03531 0.62 +2.3
3,718,849 - ECD_03531 0.62 +1.9
3,718,849 - ECD_03531 0.62 +1.2
3,718,868 + ECD_03531 0.63 +1.1
3,718,869 - ECD_03531 0.63 +0.4
3,718,869 - ECD_03531 0.63 +1.4
3,718,869 - ECD_03531 0.63 +1.2
3,718,869 - ECD_03531 0.63 +1.6
3,719,061 - ECD_03531 0.68 +1.7
3,719,061 - ECD_03531 0.68 +1.7
3,719,064 - ECD_03531 0.68 +1.7
3,719,083 - ECD_03531 0.69 +1.3
3,719,083 - ECD_03531 0.69 +1.3
3,719,086 + ECD_03531 0.69 +2.7
3,719,087 - ECD_03531 0.69 +0.7
3,719,117 + ECD_03531 0.70 +1.1
3,719,124 + ECD_03531 0.70 +2.3
3,719,210 + ECD_03531 0.72 +0.8
3,719,211 - ECD_03531 0.72 +1.1
3,719,211 - ECD_03531 0.72 +1.6
3,719,214 + ECD_03531 0.73 +0.7
3,719,214 + ECD_03531 0.73 +0.9
3,719,214 + ECD_03531 0.73 +1.7
3,719,214 + ECD_03531 0.73 +0.7
3,719,214 + ECD_03531 0.73 +1.4
3,719,215 - ECD_03531 0.73 +1.5
3,719,215 - ECD_03531 0.73 +2.0
3,719,226 - ECD_03531 0.73 +3.3
3,719,286 + ECD_03531 0.75 +1.1
3,719,287 - ECD_03531 0.75 +0.9
3,719,334 + ECD_03531 0.76 +1.4
3,719,335 - ECD_03531 0.76 +2.0
3,719,335 - ECD_03531 0.76 +0.5
3,719,335 - ECD_03531 0.76 +1.3
3,719,336 + ECD_03531 0.76 +1.9
3,719,373 - ECD_03531 0.77 +1.6
3,719,400 + ECD_03531 0.78 +1.3
3,719,400 + ECD_03531 0.78 +2.0
3,719,400 + ECD_03531 0.78 +0.4
3,719,400 + ECD_03531 0.78 +0.5
3,719,400 + ECD_03531 0.78 +1.2
3,719,400 + ECD_03531 0.78 +1.1
3,719,401 - ECD_03531 0.78 +1.6
3,719,401 - ECD_03531 0.78 +1.4
3,719,423 + ECD_03531 0.79 +0.4
3,719,424 - ECD_03531 0.79 +1.0
3,719,424 - ECD_03531 0.79 +1.2
3,719,425 + ECD_03531 0.79 +1.0
3,719,425 + ECD_03531 0.79 +1.6
3,719,425 + ECD_03531 0.79 +1.5
3,719,425 + ECD_03531 0.79 +2.8
3,719,425 + ECD_03531 0.79 +1.2
3,719,425 + ECD_03531 0.79 +0.1
3,719,425 + ECD_03531 0.79 +1.2
3,719,425 + ECD_03531 0.79 +1.1
3,719,425 + ECD_03531 0.79 +0.9
3,719,425 + ECD_03531 0.79 +0.4
3,719,426 - ECD_03531 0.79 +2.4
3,719,463 - ECD_03531 0.80 -0.3
3,719,463 - ECD_03531 0.80 +1.3
3,719,469 - ECD_03531 0.80 +1.6
3,719,492 + ECD_03531 0.81 +1.5
3,719,492 + ECD_03531 0.81 +1.4
3,719,495 + ECD_03531 0.81 +1.0
3,719,495 + ECD_03531 0.81 +1.2
3,719,501 + ECD_03531 0.81 +1.8
3,719,550 + ECD_03531 0.82 +0.5
3,719,566 - ECD_03531 0.83 +1.4
3,719,577 + ECD_03531 0.83 +0.8
3,719,577 + ECD_03531 0.83 +0.6
3,719,607 + ECD_03531 0.84 +2.0
3,719,607 + ECD_03531 0.84 +0.7
3,719,608 - ECD_03531 0.84 +1.4
3,719,608 - ECD_03531 0.84 +1.4
3,719,608 - ECD_03531 0.84 +1.9
3,719,648 + ECD_03531 0.85 +1.1
3,719,648 + ECD_03531 0.85 +2.3
3,719,648 + ECD_03531 0.85 +1.5
3,719,650 + ECD_03531 0.85 +1.2
3,719,650 + ECD_03531 0.85 +1.2
3,719,751 + ECD_03531 0.88 +1.0
3,719,752 - ECD_03531 0.88 +1.4
3,719,824 - +1.7
3,719,999 + +0.1
3,720,137 + +1.7
3,720,450 + ECD_03532 0.29 -0.2
3,720,450 + ECD_03532 0.29 +0.1
3,720,499 + ECD_03532 0.41 +0.4
3,720,500 - ECD_03532 0.41 +0.7
3,720,573 + ECD_03532 0.59 +0.7
3,721,061 + ECD_03534 0.19 +1.5
3,721,071 + ECD_03534 0.26 +0.7
3,721,113 + ECD_03534 0.54 +1.1
3,721,162 + ECD_03534 0.88 +0.6

Or see this region's nucleotide sequence