Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03520 and ECD_03521 are separated by 8 nucleotides ECD_03521 and ECD_03522 are separated by 647 nucleotides
ECD_03520: ECD_03520 - hypothetical protein, at 3,708,404 to 3,709,762
_03520
ECD_03521: ECD_03521 - hypothetical protein, at 3,709,771 to 3,712,158
_03521
ECD_03522: ECD_03522 - Single-strand binding protein (SSB) (Helix-destabilizing protein), at 3,712,806 to 3,713,291
_03522
Position (kb)
3709
3710
3711
3712
3713 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3708.966 kb on - strand, within ECD_03520 at 3709.004 kb on - strand, within ECD_03520 at 3709.056 kb on - strand, within ECD_03520 at 3709.058 kb on - strand, within ECD_03520 at 3709.210 kb on + strand, within ECD_03520 at 3709.477 kb on + strand, within ECD_03520 at 3709.478 kb on - strand, within ECD_03520 at 3709.489 kb on - strand, within ECD_03520 at 3709.537 kb on - strand, within ECD_03520 at 3709.705 kb on + strand at 3709.826 kb on + strand at 3709.832 kb on + strand at 3709.836 kb on - strand at 3710.209 kb on - strand, within ECD_03521 at 3710.305 kb on - strand, within ECD_03521 at 3710.511 kb on - strand, within ECD_03521 at 3710.667 kb on + strand, within ECD_03521 at 3710.848 kb on + strand, within ECD_03521 at 3710.848 kb on + strand, within ECD_03521 at 3710.893 kb on + strand, within ECD_03521 at 3710.894 kb on - strand, within ECD_03521 at 3710.949 kb on + strand, within ECD_03521 at 3710.949 kb on + strand, within ECD_03521 at 3710.988 kb on - strand, within ECD_03521 at 3711.128 kb on + strand, within ECD_03521 at 3711.128 kb on + strand, within ECD_03521 at 3711.145 kb on - strand, within ECD_03521 at 3711.145 kb on - strand, within ECD_03521 at 3711.185 kb on - strand, within ECD_03521 at 3711.224 kb on - strand, within ECD_03521 at 3711.224 kb on - strand, within ECD_03521 at 3711.274 kb on + strand, within ECD_03521 at 3711.275 kb on - strand, within ECD_03521 at 3711.275 kb on - strand, within ECD_03521 at 3711.316 kb on + strand, within ECD_03521 at 3711.316 kb on + strand, within ECD_03521 at 3711.317 kb on - strand, within ECD_03521 at 3711.317 kb on - strand, within ECD_03521 at 3711.318 kb on + strand, within ECD_03521 at 3711.319 kb on - strand, within ECD_03521 at 3711.354 kb on + strand, within ECD_03521 at 3711.355 kb on - strand, within ECD_03521 at 3711.441 kb on + strand, within ECD_03521 at 3711.441 kb on + strand, within ECD_03521 at 3711.441 kb on + strand, within ECD_03521 at 3711.442 kb on - strand, within ECD_03521 at 3711.464 kb on - strand, within ECD_03521 at 3711.464 kb on - strand, within ECD_03521 at 3711.474 kb on - strand, within ECD_03521 at 3711.503 kb on + strand, within ECD_03521 at 3711.503 kb on + strand, within ECD_03521 at 3711.504 kb on - strand, within ECD_03521 at 3711.504 kb on - strand, within ECD_03521 at 3711.517 kb on - strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.527 kb on + strand, within ECD_03521 at 3711.528 kb on - strand, within ECD_03521 at 3711.528 kb on - strand, within ECD_03521 at 3711.528 kb on - strand, within ECD_03521 at 3711.528 kb on - strand, within ECD_03521 at 3711.528 kb on - strand, within ECD_03521 at 3711.528 kb on - strand, within ECD_03521 at 3711.531 kb on + strand, within ECD_03521 at 3711.532 kb on - strand, within ECD_03521 at 3711.532 kb on - strand, within ECD_03521 at 3711.532 kb on - strand, within ECD_03521 at 3711.570 kb on - strand, within ECD_03521 at 3711.572 kb on + strand, within ECD_03521 at 3711.572 kb on + strand, within ECD_03521 at 3711.572 kb on + strand, within ECD_03521 at 3711.573 kb on - strand, within ECD_03521 at 3711.573 kb on - strand, within ECD_03521 at 3711.634 kb on - strand, within ECD_03521 at 3711.695 kb on + strand, within ECD_03521 at 3711.695 kb on + strand, within ECD_03521 at 3711.800 kb on + strand, within ECD_03521 at 3711.801 kb on - strand, within ECD_03521 at 3711.806 kb on + strand, within ECD_03521 at 3711.831 kb on + strand, within ECD_03521 at 3711.841 kb on - strand, within ECD_03521 at 3711.841 kb on - strand, within ECD_03521 at 3711.847 kb on + strand, within ECD_03521 at 3711.848 kb on - strand, within ECD_03521 at 3712.020 kb on - strand at 3712.224 kb on - strand at 3712.380 kb on - strand at 3712.800 kb on + strand at 3712.873 kb on - strand, within ECD_03522 at 3712.873 kb on - strand, within ECD_03522 at 3712.873 kb on - strand, within ECD_03522 at 3713.006 kb on - strand, within ECD_03522 at 3713.040 kb on + strand, within ECD_03522 at 3713.040 kb on + strand, within ECD_03522 at 3713.041 kb on - strand, within ECD_03522
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,708,966 - ECD_03520 0.41 +1.1 3,709,004 - ECD_03520 0.44 +0.6 3,709,056 - ECD_03520 0.48 +2.0 3,709,058 - ECD_03520 0.48 +0.3 3,709,210 + ECD_03520 0.59 +1.4 3,709,477 + ECD_03520 0.79 +0.9 3,709,478 - ECD_03520 0.79 +0.6 3,709,489 - ECD_03520 0.80 +1.4 3,709,537 - ECD_03520 0.83 +2.5 3,709,705 + +2.2 3,709,826 + +1.0 3,709,832 + +1.7 3,709,836 - +1.1 3,710,209 - ECD_03521 0.18 +0.3 3,710,305 - ECD_03521 0.22 +1.9 3,710,511 - ECD_03521 0.31 +2.1 3,710,667 + ECD_03521 0.38 +2.2 3,710,848 + ECD_03521 0.45 +1.7 3,710,848 + ECD_03521 0.45 +1.7 3,710,893 + ECD_03521 0.47 +2.7 3,710,894 - ECD_03521 0.47 +0.5 3,710,949 + ECD_03521 0.49 +2.5 3,710,949 + ECD_03521 0.49 +1.8 3,710,988 - ECD_03521 0.51 +2.2 3,711,128 + ECD_03521 0.57 +1.8 3,711,128 + ECD_03521 0.57 +1.8 3,711,145 - ECD_03521 0.58 +1.5 3,711,145 - ECD_03521 0.58 +1.3 3,711,185 - ECD_03521 0.59 +2.1 3,711,224 - ECD_03521 0.61 +1.0 3,711,224 - ECD_03521 0.61 +1.6 3,711,274 + ECD_03521 0.63 +1.5 3,711,275 - ECD_03521 0.63 +1.4 3,711,275 - ECD_03521 0.63 +1.9 3,711,316 + ECD_03521 0.65 +2.2 3,711,316 + ECD_03521 0.65 +1.7 3,711,317 - ECD_03521 0.65 +1.3 3,711,317 - ECD_03521 0.65 +1.9 3,711,318 + ECD_03521 0.65 +1.4 3,711,319 - ECD_03521 0.65 +3.6 3,711,354 + ECD_03521 0.66 +1.6 3,711,355 - ECD_03521 0.66 +2.6 3,711,441 + ECD_03521 0.70 +2.2 3,711,441 + ECD_03521 0.70 +2.4 3,711,441 + ECD_03521 0.70 +1.3 3,711,442 - ECD_03521 0.70 +3.1 3,711,464 - ECD_03521 0.71 +1.9 3,711,464 - ECD_03521 0.71 +1.1 3,711,474 - ECD_03521 0.71 +2.1 3,711,503 + ECD_03521 0.73 +1.8 3,711,503 + ECD_03521 0.73 +2.1 3,711,504 - ECD_03521 0.73 +1.9 3,711,504 - ECD_03521 0.73 +2.4 3,711,517 - ECD_03521 0.73 +2.6 3,711,527 + ECD_03521 0.74 +1.5 3,711,527 + ECD_03521 0.74 +1.1 3,711,527 + ECD_03521 0.74 +2.3 3,711,527 + ECD_03521 0.74 +1.6 3,711,527 + ECD_03521 0.74 +2.4 3,711,527 + ECD_03521 0.74 +1.7 3,711,527 + ECD_03521 0.74 +2.2 3,711,527 + ECD_03521 0.74 +2.8 3,711,528 - ECD_03521 0.74 +1.1 3,711,528 - ECD_03521 0.74 +1.5 3,711,528 - ECD_03521 0.74 +2.9 3,711,528 - ECD_03521 0.74 +2.2 3,711,528 - ECD_03521 0.74 +1.7 3,711,528 - ECD_03521 0.74 +1.9 3,711,531 + ECD_03521 0.74 +1.9 3,711,532 - ECD_03521 0.74 +1.3 3,711,532 - ECD_03521 0.74 +3.1 3,711,532 - ECD_03521 0.74 +0.3 3,711,570 - ECD_03521 0.75 +1.4 3,711,572 + ECD_03521 0.75 +1.4 3,711,572 + ECD_03521 0.75 +2.1 3,711,572 + ECD_03521 0.75 +1.0 3,711,573 - ECD_03521 0.75 +1.2 3,711,573 - ECD_03521 0.75 +1.8 3,711,634 - ECD_03521 0.78 +1.9 3,711,695 + ECD_03521 0.81 +1.4 3,711,695 + ECD_03521 0.81 +2.0 3,711,800 + ECD_03521 0.85 +1.7 3,711,801 - ECD_03521 0.85 +3.1 3,711,806 + ECD_03521 0.85 +1.8 3,711,831 + ECD_03521 0.86 +1.3 3,711,841 - ECD_03521 0.87 +1.8 3,711,841 - ECD_03521 0.87 +1.0 3,711,847 + ECD_03521 0.87 +2.6 3,711,848 - ECD_03521 0.87 +1.5 3,712,020 - +1.8 3,712,224 - +2.2 3,712,380 - +1.9 3,712,800 + -0.0 3,712,873 - ECD_03522 0.14 +1.5 3,712,873 - ECD_03522 0.14 +2.4 3,712,873 - ECD_03522 0.14 +2.1 3,713,006 - ECD_03522 0.41 +1.4 3,713,040 + ECD_03522 0.48 +1.4 3,713,040 + ECD_03522 0.48 +0.5 3,713,041 - ECD_03522 0.48 +1.5
Or see this region's nucleotide sequence