Strain Fitness in Escherichia coli BL21 around ECD_03521

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03520 and ECD_03521 are separated by 8 nucleotidesECD_03521 and ECD_03522 are separated by 647 nucleotides ECD_03520: ECD_03520 - hypothetical protein, at 3,708,404 to 3,709,762 _03520 ECD_03521: ECD_03521 - hypothetical protein, at 3,709,771 to 3,712,158 _03521 ECD_03522: ECD_03522 - Single-strand binding protein (SSB) (Helix-destabilizing protein), at 3,712,806 to 3,713,291 _03522 Position (kb) 3709 3710 3711 3712 3713Strain fitness (log2 ratio) -1 0 1 2 3at 3708.966 kb on - strand, within ECD_03520at 3709.004 kb on - strand, within ECD_03520at 3709.056 kb on - strand, within ECD_03520at 3709.058 kb on - strand, within ECD_03520at 3709.210 kb on + strand, within ECD_03520at 3709.477 kb on + strand, within ECD_03520at 3709.478 kb on - strand, within ECD_03520at 3709.489 kb on - strand, within ECD_03520at 3709.537 kb on - strand, within ECD_03520at 3709.705 kb on + strandat 3709.826 kb on + strandat 3709.832 kb on + strandat 3709.836 kb on - strandat 3710.209 kb on - strand, within ECD_03521at 3710.305 kb on - strand, within ECD_03521at 3710.511 kb on - strand, within ECD_03521at 3710.667 kb on + strand, within ECD_03521at 3710.848 kb on + strand, within ECD_03521at 3710.848 kb on + strand, within ECD_03521at 3710.893 kb on + strand, within ECD_03521at 3710.894 kb on - strand, within ECD_03521at 3710.949 kb on + strand, within ECD_03521at 3710.949 kb on + strand, within ECD_03521at 3710.988 kb on - strand, within ECD_03521at 3711.128 kb on + strand, within ECD_03521at 3711.128 kb on + strand, within ECD_03521at 3711.145 kb on - strand, within ECD_03521at 3711.145 kb on - strand, within ECD_03521at 3711.185 kb on - strand, within ECD_03521at 3711.224 kb on - strand, within ECD_03521at 3711.224 kb on - strand, within ECD_03521at 3711.274 kb on + strand, within ECD_03521at 3711.275 kb on - strand, within ECD_03521at 3711.275 kb on - strand, within ECD_03521at 3711.316 kb on + strand, within ECD_03521at 3711.316 kb on + strand, within ECD_03521at 3711.317 kb on - strand, within ECD_03521at 3711.317 kb on - strand, within ECD_03521at 3711.318 kb on + strand, within ECD_03521at 3711.319 kb on - strand, within ECD_03521at 3711.354 kb on + strand, within ECD_03521at 3711.355 kb on - strand, within ECD_03521at 3711.441 kb on + strand, within ECD_03521at 3711.441 kb on + strand, within ECD_03521at 3711.441 kb on + strand, within ECD_03521at 3711.442 kb on - strand, within ECD_03521at 3711.464 kb on - strand, within ECD_03521at 3711.464 kb on - strand, within ECD_03521at 3711.474 kb on - strand, within ECD_03521at 3711.503 kb on + strand, within ECD_03521at 3711.503 kb on + strand, within ECD_03521at 3711.504 kb on - strand, within ECD_03521at 3711.504 kb on - strand, within ECD_03521at 3711.517 kb on - strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.527 kb on + strand, within ECD_03521at 3711.528 kb on - strand, within ECD_03521at 3711.528 kb on - strand, within ECD_03521at 3711.528 kb on - strand, within ECD_03521at 3711.528 kb on - strand, within ECD_03521at 3711.528 kb on - strand, within ECD_03521at 3711.528 kb on - strand, within ECD_03521at 3711.531 kb on + strand, within ECD_03521at 3711.532 kb on - strand, within ECD_03521at 3711.532 kb on - strand, within ECD_03521at 3711.532 kb on - strand, within ECD_03521at 3711.570 kb on - strand, within ECD_03521at 3711.572 kb on + strand, within ECD_03521at 3711.572 kb on + strand, within ECD_03521at 3711.572 kb on + strand, within ECD_03521at 3711.573 kb on - strand, within ECD_03521at 3711.573 kb on - strand, within ECD_03521at 3711.634 kb on - strand, within ECD_03521at 3711.695 kb on + strand, within ECD_03521at 3711.695 kb on + strand, within ECD_03521at 3711.800 kb on + strand, within ECD_03521at 3711.801 kb on - strand, within ECD_03521at 3711.806 kb on + strand, within ECD_03521at 3711.831 kb on + strand, within ECD_03521at 3711.841 kb on - strand, within ECD_03521at 3711.841 kb on - strand, within ECD_03521at 3711.847 kb on + strand, within ECD_03521at 3711.848 kb on - strand, within ECD_03521at 3712.020 kb on - strandat 3712.224 kb on - strandat 3712.380 kb on - strandat 3712.800 kb on + strandat 3712.873 kb on - strand, within ECD_03522at 3712.873 kb on - strand, within ECD_03522at 3712.873 kb on - strand, within ECD_03522at 3713.006 kb on - strand, within ECD_03522at 3713.040 kb on + strand, within ECD_03522at 3713.040 kb on + strand, within ECD_03522at 3713.041 kb on - strand, within ECD_03522

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,708,966 - ECD_03520 0.41 +1.1
3,709,004 - ECD_03520 0.44 +0.6
3,709,056 - ECD_03520 0.48 +2.0
3,709,058 - ECD_03520 0.48 +0.3
3,709,210 + ECD_03520 0.59 +1.4
3,709,477 + ECD_03520 0.79 +0.9
3,709,478 - ECD_03520 0.79 +0.6
3,709,489 - ECD_03520 0.80 +1.4
3,709,537 - ECD_03520 0.83 +2.5
3,709,705 + +2.2
3,709,826 + +1.0
3,709,832 + +1.7
3,709,836 - +1.1
3,710,209 - ECD_03521 0.18 +0.3
3,710,305 - ECD_03521 0.22 +1.9
3,710,511 - ECD_03521 0.31 +2.1
3,710,667 + ECD_03521 0.38 +2.2
3,710,848 + ECD_03521 0.45 +1.7
3,710,848 + ECD_03521 0.45 +1.7
3,710,893 + ECD_03521 0.47 +2.7
3,710,894 - ECD_03521 0.47 +0.5
3,710,949 + ECD_03521 0.49 +2.5
3,710,949 + ECD_03521 0.49 +1.8
3,710,988 - ECD_03521 0.51 +2.2
3,711,128 + ECD_03521 0.57 +1.8
3,711,128 + ECD_03521 0.57 +1.8
3,711,145 - ECD_03521 0.58 +1.5
3,711,145 - ECD_03521 0.58 +1.3
3,711,185 - ECD_03521 0.59 +2.1
3,711,224 - ECD_03521 0.61 +1.0
3,711,224 - ECD_03521 0.61 +1.6
3,711,274 + ECD_03521 0.63 +1.5
3,711,275 - ECD_03521 0.63 +1.4
3,711,275 - ECD_03521 0.63 +1.9
3,711,316 + ECD_03521 0.65 +2.2
3,711,316 + ECD_03521 0.65 +1.7
3,711,317 - ECD_03521 0.65 +1.3
3,711,317 - ECD_03521 0.65 +1.9
3,711,318 + ECD_03521 0.65 +1.4
3,711,319 - ECD_03521 0.65 +3.6
3,711,354 + ECD_03521 0.66 +1.6
3,711,355 - ECD_03521 0.66 +2.6
3,711,441 + ECD_03521 0.70 +2.2
3,711,441 + ECD_03521 0.70 +2.4
3,711,441 + ECD_03521 0.70 +1.3
3,711,442 - ECD_03521 0.70 +3.1
3,711,464 - ECD_03521 0.71 +1.9
3,711,464 - ECD_03521 0.71 +1.1
3,711,474 - ECD_03521 0.71 +2.1
3,711,503 + ECD_03521 0.73 +1.8
3,711,503 + ECD_03521 0.73 +2.1
3,711,504 - ECD_03521 0.73 +1.9
3,711,504 - ECD_03521 0.73 +2.4
3,711,517 - ECD_03521 0.73 +2.6
3,711,527 + ECD_03521 0.74 +1.5
3,711,527 + ECD_03521 0.74 +1.1
3,711,527 + ECD_03521 0.74 +2.3
3,711,527 + ECD_03521 0.74 +1.6
3,711,527 + ECD_03521 0.74 +2.4
3,711,527 + ECD_03521 0.74 +1.7
3,711,527 + ECD_03521 0.74 +2.2
3,711,527 + ECD_03521 0.74 +2.8
3,711,528 - ECD_03521 0.74 +1.1
3,711,528 - ECD_03521 0.74 +1.5
3,711,528 - ECD_03521 0.74 +2.9
3,711,528 - ECD_03521 0.74 +2.2
3,711,528 - ECD_03521 0.74 +1.7
3,711,528 - ECD_03521 0.74 +1.9
3,711,531 + ECD_03521 0.74 +1.9
3,711,532 - ECD_03521 0.74 +1.3
3,711,532 - ECD_03521 0.74 +3.1
3,711,532 - ECD_03521 0.74 +0.3
3,711,570 - ECD_03521 0.75 +1.4
3,711,572 + ECD_03521 0.75 +1.4
3,711,572 + ECD_03521 0.75 +2.1
3,711,572 + ECD_03521 0.75 +1.0
3,711,573 - ECD_03521 0.75 +1.2
3,711,573 - ECD_03521 0.75 +1.8
3,711,634 - ECD_03521 0.78 +1.9
3,711,695 + ECD_03521 0.81 +1.4
3,711,695 + ECD_03521 0.81 +2.0
3,711,800 + ECD_03521 0.85 +1.7
3,711,801 - ECD_03521 0.85 +3.1
3,711,806 + ECD_03521 0.85 +1.8
3,711,831 + ECD_03521 0.86 +1.3
3,711,841 - ECD_03521 0.87 +1.8
3,711,841 - ECD_03521 0.87 +1.0
3,711,847 + ECD_03521 0.87 +2.6
3,711,848 - ECD_03521 0.87 +1.5
3,712,020 - +1.8
3,712,224 - +2.2
3,712,380 - +1.9
3,712,800 + -0.0
3,712,873 - ECD_03522 0.14 +1.5
3,712,873 - ECD_03522 0.14 +2.4
3,712,873 - ECD_03522 0.14 +2.1
3,713,006 - ECD_03522 0.41 +1.4
3,713,040 + ECD_03522 0.48 +1.4
3,713,040 + ECD_03522 0.48 +0.5
3,713,041 - ECD_03522 0.48 +1.5

Or see this region's nucleotide sequence