Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03517 and ECD_03518 are separated by 142 nucleotides ECD_03518 and ECD_03519 are separated by 24 nucleotides ECD_03519 and ECD_03520 are separated by 180 nucleotides
ECD_03517: ECD_03517 - ShiA-like protein, at 3,705,688 to 3,706,731
_03517
ECD_03518: ECD_03518 - hypothetical protein, at 3,706,874 to 3,707,104
_03518
ECD_03519: ECD_03519 - putative transcriptional regulator, at 3,707,129 to 3,708,223
_03519
ECD_03520: ECD_03520 - hypothetical protein, at 3,708,404 to 3,709,762
_03520
Position (kb)
3707
3708
3709 Strain fitness (log2 ratio)
-1
0
1
2 at 3706.132 kb on - strand, within ECD_03517 at 3706.203 kb on - strand, within ECD_03517 at 3706.240 kb on + strand, within ECD_03517 at 3706.324 kb on + strand, within ECD_03517 at 3706.324 kb on + strand, within ECD_03517 at 3706.325 kb on - strand, within ECD_03517 at 3706.325 kb on - strand, within ECD_03517 at 3706.325 kb on - strand, within ECD_03517 at 3706.414 kb on + strand, within ECD_03517 at 3706.414 kb on + strand, within ECD_03517 at 3706.415 kb on - strand, within ECD_03517 at 3706.417 kb on + strand, within ECD_03517 at 3706.418 kb on - strand, within ECD_03517 at 3706.418 kb on - strand, within ECD_03517 at 3706.426 kb on + strand, within ECD_03517 at 3706.426 kb on + strand, within ECD_03517 at 3706.427 kb on - strand, within ECD_03517 at 3706.427 kb on - strand, within ECD_03517 at 3706.427 kb on - strand, within ECD_03517 at 3706.663 kb on + strand at 3706.719 kb on - strand at 3706.730 kb on - strand at 3706.837 kb on - strand at 3707.087 kb on - strand at 3707.202 kb on - strand at 3707.202 kb on - strand at 3707.252 kb on + strand, within ECD_03519 at 3707.252 kb on + strand, within ECD_03519 at 3707.253 kb on - strand, within ECD_03519 at 3707.267 kb on + strand, within ECD_03519 at 3707.267 kb on + strand, within ECD_03519 at 3707.268 kb on - strand, within ECD_03519 at 3707.272 kb on + strand, within ECD_03519 at 3707.272 kb on + strand, within ECD_03519 at 3707.272 kb on + strand, within ECD_03519 at 3707.272 kb on + strand, within ECD_03519 at 3707.273 kb on - strand, within ECD_03519 at 3707.273 kb on - strand, within ECD_03519 at 3707.276 kb on + strand, within ECD_03519 at 3707.276 kb on + strand, within ECD_03519 at 3707.277 kb on - strand, within ECD_03519 at 3707.306 kb on + strand, within ECD_03519 at 3707.307 kb on - strand, within ECD_03519 at 3707.307 kb on - strand, within ECD_03519 at 3707.312 kb on + strand, within ECD_03519 at 3707.313 kb on - strand, within ECD_03519 at 3707.313 kb on - strand, within ECD_03519 at 3707.321 kb on - strand, within ECD_03519 at 3707.336 kb on + strand, within ECD_03519 at 3707.336 kb on + strand, within ECD_03519 at 3707.337 kb on - strand, within ECD_03519 at 3707.417 kb on - strand, within ECD_03519 at 3707.422 kb on + strand, within ECD_03519 at 3707.471 kb on - strand, within ECD_03519 at 3707.485 kb on + strand, within ECD_03519 at 3707.540 kb on - strand, within ECD_03519 at 3707.596 kb on + strand, within ECD_03519 at 3707.625 kb on + strand, within ECD_03519 at 3707.626 kb on - strand, within ECD_03519 at 3707.641 kb on + strand, within ECD_03519 at 3707.737 kb on + strand, within ECD_03519 at 3707.738 kb on - strand, within ECD_03519 at 3707.798 kb on + strand, within ECD_03519 at 3707.798 kb on + strand, within ECD_03519 at 3707.815 kb on + strand, within ECD_03519 at 3707.878 kb on + strand, within ECD_03519 at 3707.879 kb on - strand, within ECD_03519 at 3708.113 kb on - strand, within ECD_03519 at 3708.393 kb on + strand at 3708.439 kb on + strand at 3708.475 kb on - strand at 3708.675 kb on - strand, within ECD_03520 at 3708.966 kb on - strand, within ECD_03520 at 3709.004 kb on - strand, within ECD_03520 at 3709.056 kb on - strand, within ECD_03520 at 3709.058 kb on - strand, within ECD_03520 at 3709.210 kb on + strand, within ECD_03520
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,706,132 - ECD_03517 0.43 +1.6 3,706,203 - ECD_03517 0.49 +1.1 3,706,240 + ECD_03517 0.53 +1.7 3,706,324 + ECD_03517 0.61 +1.1 3,706,324 + ECD_03517 0.61 +0.0 3,706,325 - ECD_03517 0.61 -0.8 3,706,325 - ECD_03517 0.61 +0.3 3,706,325 - ECD_03517 0.61 +1.2 3,706,414 + ECD_03517 0.70 +1.8 3,706,414 + ECD_03517 0.70 +0.1 3,706,415 - ECD_03517 0.70 +1.0 3,706,417 + ECD_03517 0.70 +1.5 3,706,418 - ECD_03517 0.70 +0.5 3,706,418 - ECD_03517 0.70 +1.6 3,706,426 + ECD_03517 0.71 +1.2 3,706,426 + ECD_03517 0.71 +1.1 3,706,427 - ECD_03517 0.71 +0.6 3,706,427 - ECD_03517 0.71 +0.8 3,706,427 - ECD_03517 0.71 +1.4 3,706,663 + +1.7 3,706,719 - -0.2 3,706,730 - +1.0 3,706,837 - +0.8 3,707,087 - +1.7 3,707,202 - +1.0 3,707,202 - +1.7 3,707,252 + ECD_03519 0.11 +1.8 3,707,252 + ECD_03519 0.11 +1.1 3,707,253 - ECD_03519 0.11 +0.3 3,707,267 + ECD_03519 0.13 +1.5 3,707,267 + ECD_03519 0.13 +1.6 3,707,268 - ECD_03519 0.13 +1.2 3,707,272 + ECD_03519 0.13 -0.8 3,707,272 + ECD_03519 0.13 -0.0 3,707,272 + ECD_03519 0.13 +1.6 3,707,272 + ECD_03519 0.13 +0.9 3,707,273 - ECD_03519 0.13 +1.5 3,707,273 - ECD_03519 0.13 +1.1 3,707,276 + ECD_03519 0.13 +1.4 3,707,276 + ECD_03519 0.13 +1.8 3,707,277 - ECD_03519 0.14 +0.5 3,707,306 + ECD_03519 0.16 +1.7 3,707,307 - ECD_03519 0.16 +1.6 3,707,307 - ECD_03519 0.16 +1.4 3,707,312 + ECD_03519 0.17 +2.6 3,707,313 - ECD_03519 0.17 +0.7 3,707,313 - ECD_03519 0.17 +1.2 3,707,321 - ECD_03519 0.18 +1.6 3,707,336 + ECD_03519 0.19 +1.7 3,707,336 + ECD_03519 0.19 +2.0 3,707,337 - ECD_03519 0.19 +1.1 3,707,417 - ECD_03519 0.26 +0.7 3,707,422 + ECD_03519 0.27 +1.9 3,707,471 - ECD_03519 0.31 +0.3 3,707,485 + ECD_03519 0.33 +1.5 3,707,540 - ECD_03519 0.38 +1.1 3,707,596 + ECD_03519 0.43 +1.6 3,707,625 + ECD_03519 0.45 +1.5 3,707,626 - ECD_03519 0.45 +1.5 3,707,641 + ECD_03519 0.47 +1.7 3,707,737 + ECD_03519 0.56 +0.7 3,707,738 - ECD_03519 0.56 +1.6 3,707,798 + ECD_03519 0.61 +0.5 3,707,798 + ECD_03519 0.61 +0.8 3,707,815 + ECD_03519 0.63 +1.3 3,707,878 + ECD_03519 0.68 +1.0 3,707,879 - ECD_03519 0.68 +1.4 3,708,113 - ECD_03519 0.90 +1.8 3,708,393 + +2.1 3,708,439 + +1.6 3,708,475 - +1.5 3,708,675 - ECD_03520 0.20 +1.4 3,708,966 - ECD_03520 0.41 +1.1 3,709,004 - ECD_03520 0.44 +0.6 3,709,056 - ECD_03520 0.48 +2.0 3,709,058 - ECD_03520 0.48 +0.3 3,709,210 + ECD_03520 0.59 +1.4
Or see this region's nucleotide sequence