Strain Fitness in Escherichia coli BL21 around ECD_03472

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03471 and ECD_03472 are separated by 3 nucleotidesECD_03472 and ECD_03473 overlap by 14 nucleotides ECD_03471: ECD_03471 - activator of AmiB,C murein hydrolases, septal ring factor, at 3,656,039 to 3,657,298 _03471 ECD_03472: ECD_03472 - putative polysaccharide deacetylase, at 3,657,302 to 3,658,261 _03472 ECD_03473: ECD_03473 - LPS(HepIII)-glucuronic acid glycosyltransferase, at 3,658,248 to 3,659,282 _03473 Position (kb) 3657 3658 3659Strain fitness (log2 ratio) -2 -1 0 1 2at 3657.296 kb on + strandat 3657.297 kb on - strandat 3657.364 kb on - strandat 3657.462 kb on + strand, within ECD_03472at 3657.462 kb on + strand, within ECD_03472at 3657.466 kb on - strand, within ECD_03472at 3657.509 kb on - strand, within ECD_03472at 3657.619 kb on + strand, within ECD_03472at 3657.625 kb on + strand, within ECD_03472at 3657.691 kb on + strand, within ECD_03472at 3657.735 kb on - strand, within ECD_03472at 3657.735 kb on - strand, within ECD_03472at 3657.743 kb on + strand, within ECD_03472at 3657.744 kb on - strand, within ECD_03472at 3657.954 kb on + strand, within ECD_03472at 3657.968 kb on + strand, within ECD_03472at 3657.969 kb on - strand, within ECD_03472at 3657.969 kb on - strand, within ECD_03472at 3658.039 kb on + strand, within ECD_03472at 3658.040 kb on - strand, within ECD_03472at 3658.040 kb on - strand, within ECD_03472at 3658.040 kb on - strand, within ECD_03472at 3658.130 kb on + strand, within ECD_03472at 3658.131 kb on - strand, within ECD_03472at 3658.131 kb on - strand, within ECD_03472at 3658.131 kb on - strand, within ECD_03472at 3658.153 kb on - strand, within ECD_03472at 3658.153 kb on - strand, within ECD_03472at 3658.153 kb on - strand, within ECD_03472at 3658.156 kb on - strand, within ECD_03472at 3658.260 kb on - strandat 3658.383 kb on - strand, within ECD_03473at 3658.383 kb on - strand, within ECD_03473at 3658.385 kb on - strand, within ECD_03473at 3658.385 kb on - strand, within ECD_03473at 3658.385 kb on - strand, within ECD_03473at 3658.385 kb on - strand, within ECD_03473at 3658.385 kb on - strand, within ECD_03473at 3658.388 kb on + strand, within ECD_03473at 3658.398 kb on - strand, within ECD_03473at 3658.398 kb on - strand, within ECD_03473at 3658.398 kb on - strand, within ECD_03473at 3658.402 kb on - strand, within ECD_03473at 3658.478 kb on - strand, within ECD_03473at 3658.626 kb on - strand, within ECD_03473at 3658.626 kb on - strand, within ECD_03473at 3658.644 kb on - strand, within ECD_03473at 3658.645 kb on + strand, within ECD_03473at 3658.646 kb on - strand, within ECD_03473at 3658.976 kb on - strand, within ECD_03473at 3658.976 kb on - strand, within ECD_03473at 3659.021 kb on - strand, within ECD_03473at 3659.120 kb on - strand, within ECD_03473at 3659.120 kb on - strand, within ECD_03473at 3659.120 kb on - strand, within ECD_03473at 3659.163 kb on - strand, within ECD_03473at 3659.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,657,296 + +1.9
3,657,297 - +0.1
3,657,364 - -1.4
3,657,462 + ECD_03472 0.17 -1.1
3,657,462 + ECD_03472 0.17 -1.3
3,657,466 - ECD_03472 0.17 -0.4
3,657,509 - ECD_03472 0.22 -2.2
3,657,619 + ECD_03472 0.33 -1.3
3,657,625 + ECD_03472 0.34 +0.4
3,657,691 + ECD_03472 0.41 -0.4
3,657,735 - ECD_03472 0.45 -1.6
3,657,735 - ECD_03472 0.45 -0.6
3,657,743 + ECD_03472 0.46 -0.3
3,657,744 - ECD_03472 0.46 -0.2
3,657,954 + ECD_03472 0.68 -1.5
3,657,968 + ECD_03472 0.69 -0.8
3,657,969 - ECD_03472 0.69 -1.3
3,657,969 - ECD_03472 0.69 -1.6
3,658,039 + ECD_03472 0.77 -1.0
3,658,040 - ECD_03472 0.77 -1.1
3,658,040 - ECD_03472 0.77 -1.2
3,658,040 - ECD_03472 0.77 -0.4
3,658,130 + ECD_03472 0.86 +0.3
3,658,131 - ECD_03472 0.86 -1.8
3,658,131 - ECD_03472 0.86 -0.8
3,658,131 - ECD_03472 0.86 +0.3
3,658,153 - ECD_03472 0.89 -0.5
3,658,153 - ECD_03472 0.89 -2.1
3,658,153 - ECD_03472 0.89 -0.2
3,658,156 - ECD_03472 0.89 -0.8
3,658,260 - -1.2
3,658,383 - ECD_03473 0.13 +0.0
3,658,383 - ECD_03473 0.13 +0.5
3,658,385 - ECD_03473 0.13 +0.6
3,658,385 - ECD_03473 0.13 -0.8
3,658,385 - ECD_03473 0.13 -0.4
3,658,385 - ECD_03473 0.13 -0.1
3,658,385 - ECD_03473 0.13 -0.2
3,658,388 + ECD_03473 0.14 -0.2
3,658,398 - ECD_03473 0.14 -0.7
3,658,398 - ECD_03473 0.14 -0.9
3,658,398 - ECD_03473 0.14 -0.1
3,658,402 - ECD_03473 0.15 -0.4
3,658,478 - ECD_03473 0.22 -0.2
3,658,626 - ECD_03473 0.37 -0.6
3,658,626 - ECD_03473 0.37 -0.3
3,658,644 - ECD_03473 0.38 -0.1
3,658,645 + ECD_03473 0.38 -0.5
3,658,646 - ECD_03473 0.38 +0.3
3,658,976 - ECD_03473 0.70 -1.3
3,658,976 - ECD_03473 0.70 +0.2
3,659,021 - ECD_03473 0.75 -0.8
3,659,120 - ECD_03473 0.84 -0.1
3,659,120 - ECD_03473 0.84 -1.0
3,659,120 - ECD_03473 0.84 -0.0
3,659,163 - ECD_03473 0.88 -0.9
3,659,240 - -0.9

Or see this region's nucleotide sequence