Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03443 and ECD_03444 are separated by 164 nucleotides ECD_03444 and ECD_03445 are separated by 189 nucleotides
ECD_03443: ECD_03443 - aldehyde dehydrogenase B, at 3,621,362 to 3,622,900
_03443
ECD_03444: ECD_03444 - L-threonine dehydrogenase, at 3,623,065 to 3,624,216
_03444
ECD_03445: ECD_03445 - selenocysteinyl-tRNA-specific translation factor, at 3,624,406 to 3,626,250
_03445
Position (kb)
3623
3624
3625 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3622.075 kb on + strand, within ECD_03443 at 3622.076 kb on - strand, within ECD_03443 at 3622.076 kb on - strand, within ECD_03443 at 3622.076 kb on - strand, within ECD_03443 at 3622.114 kb on + strand, within ECD_03443 at 3622.138 kb on + strand, within ECD_03443 at 3622.139 kb on - strand, within ECD_03443 at 3622.218 kb on - strand, within ECD_03443 at 3622.283 kb on + strand, within ECD_03443 at 3622.293 kb on - strand, within ECD_03443 at 3622.530 kb on - strand, within ECD_03443 at 3622.672 kb on + strand, within ECD_03443 at 3622.673 kb on - strand, within ECD_03443 at 3622.673 kb on - strand, within ECD_03443 at 3622.673 kb on - strand, within ECD_03443 at 3622.779 kb on + strand at 3622.817 kb on - strand at 3622.870 kb on + strand at 3622.871 kb on - strand at 3622.892 kb on - strand at 3622.924 kb on + strand at 3622.924 kb on + strand at 3622.924 kb on + strand at 3622.926 kb on + strand at 3622.927 kb on - strand at 3622.936 kb on - strand at 3622.985 kb on + strand at 3622.986 kb on - strand at 3622.986 kb on - strand at 3622.986 kb on - strand at 3622.996 kb on + strand at 3623.017 kb on + strand at 3623.017 kb on + strand at 3623.017 kb on + strand at 3623.017 kb on + strand at 3623.017 kb on + strand at 3623.018 kb on - strand at 3623.018 kb on - strand at 3623.066 kb on + strand at 3623.124 kb on + strand at 3623.125 kb on - strand at 3623.151 kb on + strand at 3623.348 kb on - strand, within ECD_03444 at 3623.377 kb on - strand, within ECD_03444 at 3623.377 kb on - strand, within ECD_03444 at 3623.380 kb on + strand, within ECD_03444 at 3623.380 kb on + strand, within ECD_03444 at 3623.381 kb on - strand, within ECD_03444 at 3623.381 kb on - strand, within ECD_03444 at 3623.400 kb on - strand, within ECD_03444 at 3623.436 kb on - strand, within ECD_03444 at 3623.483 kb on + strand, within ECD_03444 at 3623.484 kb on - strand, within ECD_03444 at 3623.484 kb on - strand, within ECD_03444 at 3623.511 kb on + strand, within ECD_03444 at 3623.609 kb on + strand, within ECD_03444 at 3623.609 kb on + strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.610 kb on - strand, within ECD_03444 at 3623.671 kb on - strand, within ECD_03444 at 3623.721 kb on + strand, within ECD_03444 at 3623.722 kb on - strand, within ECD_03444 at 3624.083 kb on - strand, within ECD_03444 at 3624.112 kb on + strand at 3624.217 kb on - strand at 3624.235 kb on + strand at 3624.585 kb on + strand at 3624.617 kb on + strand, within ECD_03445 at 3624.618 kb on - strand, within ECD_03445 at 3624.647 kb on - strand, within ECD_03445 at 3624.812 kb on - strand, within ECD_03445 at 3624.962 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.026 kb on + strand, within ECD_03445 at 3625.027 kb on - strand, within ECD_03445 at 3625.027 kb on - strand, within ECD_03445 at 3625.029 kb on - strand, within ECD_03445 at 3625.041 kb on + strand, within ECD_03445 at 3625.042 kb on - strand, within ECD_03445 at 3625.043 kb on + strand, within ECD_03445 at 3625.044 kb on - strand, within ECD_03445 at 3625.044 kb on - strand, within ECD_03445 at 3625.197 kb on - strand, within ECD_03445
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,622,075 + ECD_03443 0.46 +1.9 3,622,076 - ECD_03443 0.46 +0.4 3,622,076 - ECD_03443 0.46 +0.7 3,622,076 - ECD_03443 0.46 +0.1 3,622,114 + ECD_03443 0.49 +0.5 3,622,138 + ECD_03443 0.50 +1.1 3,622,139 - ECD_03443 0.50 +1.1 3,622,218 - ECD_03443 0.56 +0.7 3,622,283 + ECD_03443 0.60 +1.3 3,622,293 - ECD_03443 0.60 +0.6 3,622,530 - ECD_03443 0.76 +0.7 3,622,672 + ECD_03443 0.85 -1.0 3,622,673 - ECD_03443 0.85 +0.4 3,622,673 - ECD_03443 0.85 -1.2 3,622,673 - ECD_03443 0.85 -0.5 3,622,779 + -0.1 3,622,817 - -0.4 3,622,870 + -0.2 3,622,871 - -0.3 3,622,892 - -1.6 3,622,924 + +1.2 3,622,924 + -0.9 3,622,924 + +1.1 3,622,926 + -1.4 3,622,927 - -1.6 3,622,936 - +0.2 3,622,985 + -0.8 3,622,986 - -0.2 3,622,986 - -0.2 3,622,986 - +0.7 3,622,996 + +0.2 3,623,017 + -0.0 3,623,017 + -1.2 3,623,017 + -0.4 3,623,017 + +0.0 3,623,017 + +0.7 3,623,018 - -0.2 3,623,018 - -0.3 3,623,066 + +0.4 3,623,124 + +1.9 3,623,125 - +0.1 3,623,151 + +1.1 3,623,348 - ECD_03444 0.25 -0.4 3,623,377 - ECD_03444 0.27 +0.1 3,623,377 - ECD_03444 0.27 +0.8 3,623,380 + ECD_03444 0.27 +0.3 3,623,380 + ECD_03444 0.27 +0.8 3,623,381 - ECD_03444 0.27 +0.5 3,623,381 - ECD_03444 0.27 -0.6 3,623,400 - ECD_03444 0.29 +1.0 3,623,436 - ECD_03444 0.32 -0.1 3,623,483 + ECD_03444 0.36 -1.0 3,623,484 - ECD_03444 0.36 +0.5 3,623,484 - ECD_03444 0.36 -0.5 3,623,511 + ECD_03444 0.39 +0.3 3,623,609 + ECD_03444 0.47 +0.4 3,623,609 + ECD_03444 0.47 -0.3 3,623,610 - ECD_03444 0.47 -2.5 3,623,610 - ECD_03444 0.47 +0.1 3,623,610 - ECD_03444 0.47 +0.8 3,623,610 - ECD_03444 0.47 -0.3 3,623,671 - ECD_03444 0.53 +0.4 3,623,721 + ECD_03444 0.57 +0.1 3,623,722 - ECD_03444 0.57 +0.7 3,624,083 - ECD_03444 0.88 -0.2 3,624,112 + -0.7 3,624,217 - -0.7 3,624,235 + +0.6 3,624,585 + -0.7 3,624,617 + ECD_03445 0.11 +1.4 3,624,618 - ECD_03445 0.11 -0.0 3,624,647 - ECD_03445 0.13 -0.4 3,624,812 - ECD_03445 0.22 +0.8 3,624,962 + ECD_03445 0.30 -2.3 3,625,026 + ECD_03445 0.34 +1.0 3,625,026 + ECD_03445 0.34 +0.1 3,625,026 + ECD_03445 0.34 -0.9 3,625,026 + ECD_03445 0.34 -0.5 3,625,027 - ECD_03445 0.34 +0.2 3,625,027 - ECD_03445 0.34 -0.6 3,625,029 - ECD_03445 0.34 -1.9 3,625,041 + ECD_03445 0.34 -1.8 3,625,042 - ECD_03445 0.34 +0.6 3,625,043 + ECD_03445 0.35 -0.9 3,625,044 - ECD_03445 0.35 -0.0 3,625,044 - ECD_03445 0.35 -0.1 3,625,197 - ECD_03445 0.43 -0.2
Or see this region's nucleotide sequence