Strain Fitness in Escherichia coli BL21 around ECD_03444

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03443 and ECD_03444 are separated by 164 nucleotidesECD_03444 and ECD_03445 are separated by 189 nucleotides ECD_03443: ECD_03443 - aldehyde dehydrogenase B, at 3,621,362 to 3,622,900 _03443 ECD_03444: ECD_03444 - L-threonine dehydrogenase, at 3,623,065 to 3,624,216 _03444 ECD_03445: ECD_03445 - selenocysteinyl-tRNA-specific translation factor, at 3,624,406 to 3,626,250 _03445 Position (kb) 3623 3624 3625Strain fitness (log2 ratio) -2 -1 0 1 2at 3622.075 kb on + strand, within ECD_03443at 3622.076 kb on - strand, within ECD_03443at 3622.076 kb on - strand, within ECD_03443at 3622.076 kb on - strand, within ECD_03443at 3622.114 kb on + strand, within ECD_03443at 3622.138 kb on + strand, within ECD_03443at 3622.139 kb on - strand, within ECD_03443at 3622.218 kb on - strand, within ECD_03443at 3622.283 kb on + strand, within ECD_03443at 3622.293 kb on - strand, within ECD_03443at 3622.530 kb on - strand, within ECD_03443at 3622.672 kb on + strand, within ECD_03443at 3622.673 kb on - strand, within ECD_03443at 3622.673 kb on - strand, within ECD_03443at 3622.673 kb on - strand, within ECD_03443at 3622.779 kb on + strandat 3622.817 kb on - strandat 3622.870 kb on + strandat 3622.871 kb on - strandat 3622.892 kb on - strandat 3622.924 kb on + strandat 3622.924 kb on + strandat 3622.924 kb on + strandat 3622.926 kb on + strandat 3622.927 kb on - strandat 3622.936 kb on - strandat 3622.985 kb on + strandat 3622.986 kb on - strandat 3622.986 kb on - strandat 3622.986 kb on - strandat 3622.996 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.017 kb on + strandat 3623.018 kb on - strandat 3623.018 kb on - strandat 3623.066 kb on + strandat 3623.124 kb on + strandat 3623.125 kb on - strandat 3623.151 kb on + strandat 3623.348 kb on - strand, within ECD_03444at 3623.377 kb on - strand, within ECD_03444at 3623.377 kb on - strand, within ECD_03444at 3623.380 kb on + strand, within ECD_03444at 3623.380 kb on + strand, within ECD_03444at 3623.381 kb on - strand, within ECD_03444at 3623.381 kb on - strand, within ECD_03444at 3623.400 kb on - strand, within ECD_03444at 3623.436 kb on - strand, within ECD_03444at 3623.483 kb on + strand, within ECD_03444at 3623.484 kb on - strand, within ECD_03444at 3623.484 kb on - strand, within ECD_03444at 3623.511 kb on + strand, within ECD_03444at 3623.609 kb on + strand, within ECD_03444at 3623.609 kb on + strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.610 kb on - strand, within ECD_03444at 3623.671 kb on - strand, within ECD_03444at 3623.721 kb on + strand, within ECD_03444at 3623.722 kb on - strand, within ECD_03444at 3624.083 kb on - strand, within ECD_03444at 3624.112 kb on + strandat 3624.217 kb on - strandat 3624.235 kb on + strandat 3624.585 kb on + strandat 3624.617 kb on + strand, within ECD_03445at 3624.618 kb on - strand, within ECD_03445at 3624.647 kb on - strand, within ECD_03445at 3624.812 kb on - strand, within ECD_03445at 3624.962 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.026 kb on + strand, within ECD_03445at 3625.027 kb on - strand, within ECD_03445at 3625.027 kb on - strand, within ECD_03445at 3625.029 kb on - strand, within ECD_03445at 3625.041 kb on + strand, within ECD_03445at 3625.042 kb on - strand, within ECD_03445at 3625.043 kb on + strand, within ECD_03445at 3625.044 kb on - strand, within ECD_03445at 3625.044 kb on - strand, within ECD_03445at 3625.197 kb on - strand, within ECD_03445

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,622,075 + ECD_03443 0.46 +1.9
3,622,076 - ECD_03443 0.46 +0.4
3,622,076 - ECD_03443 0.46 +0.7
3,622,076 - ECD_03443 0.46 +0.1
3,622,114 + ECD_03443 0.49 +0.5
3,622,138 + ECD_03443 0.50 +1.1
3,622,139 - ECD_03443 0.50 +1.1
3,622,218 - ECD_03443 0.56 +0.7
3,622,283 + ECD_03443 0.60 +1.3
3,622,293 - ECD_03443 0.60 +0.6
3,622,530 - ECD_03443 0.76 +0.7
3,622,672 + ECD_03443 0.85 -1.0
3,622,673 - ECD_03443 0.85 +0.4
3,622,673 - ECD_03443 0.85 -1.2
3,622,673 - ECD_03443 0.85 -0.5
3,622,779 + -0.1
3,622,817 - -0.4
3,622,870 + -0.2
3,622,871 - -0.3
3,622,892 - -1.6
3,622,924 + +1.2
3,622,924 + -0.9
3,622,924 + +1.1
3,622,926 + -1.4
3,622,927 - -1.6
3,622,936 - +0.2
3,622,985 + -0.8
3,622,986 - -0.2
3,622,986 - -0.2
3,622,986 - +0.7
3,622,996 + +0.2
3,623,017 + -0.0
3,623,017 + -1.2
3,623,017 + -0.4
3,623,017 + +0.0
3,623,017 + +0.7
3,623,018 - -0.2
3,623,018 - -0.3
3,623,066 + +0.4
3,623,124 + +1.9
3,623,125 - +0.1
3,623,151 + +1.1
3,623,348 - ECD_03444 0.25 -0.4
3,623,377 - ECD_03444 0.27 +0.1
3,623,377 - ECD_03444 0.27 +0.8
3,623,380 + ECD_03444 0.27 +0.3
3,623,380 + ECD_03444 0.27 +0.8
3,623,381 - ECD_03444 0.27 +0.5
3,623,381 - ECD_03444 0.27 -0.6
3,623,400 - ECD_03444 0.29 +1.0
3,623,436 - ECD_03444 0.32 -0.1
3,623,483 + ECD_03444 0.36 -1.0
3,623,484 - ECD_03444 0.36 +0.5
3,623,484 - ECD_03444 0.36 -0.5
3,623,511 + ECD_03444 0.39 +0.3
3,623,609 + ECD_03444 0.47 +0.4
3,623,609 + ECD_03444 0.47 -0.3
3,623,610 - ECD_03444 0.47 -2.5
3,623,610 - ECD_03444 0.47 +0.1
3,623,610 - ECD_03444 0.47 +0.8
3,623,610 - ECD_03444 0.47 -0.3
3,623,671 - ECD_03444 0.53 +0.4
3,623,721 + ECD_03444 0.57 +0.1
3,623,722 - ECD_03444 0.57 +0.7
3,624,083 - ECD_03444 0.88 -0.2
3,624,112 + -0.7
3,624,217 - -0.7
3,624,235 + +0.6
3,624,585 + -0.7
3,624,617 + ECD_03445 0.11 +1.4
3,624,618 - ECD_03445 0.11 -0.0
3,624,647 - ECD_03445 0.13 -0.4
3,624,812 - ECD_03445 0.22 +0.8
3,624,962 + ECD_03445 0.30 -2.3
3,625,026 + ECD_03445 0.34 +1.0
3,625,026 + ECD_03445 0.34 +0.1
3,625,026 + ECD_03445 0.34 -0.9
3,625,026 + ECD_03445 0.34 -0.5
3,625,027 - ECD_03445 0.34 +0.2
3,625,027 - ECD_03445 0.34 -0.6
3,625,029 - ECD_03445 0.34 -1.9
3,625,041 + ECD_03445 0.34 -1.8
3,625,042 - ECD_03445 0.34 +0.6
3,625,043 + ECD_03445 0.35 -0.9
3,625,044 - ECD_03445 0.35 -0.0
3,625,044 - ECD_03445 0.35 -0.1
3,625,197 - ECD_03445 0.43 -0.2

Or see this region's nucleotide sequence