Strain Fitness in Escherichia coli BL21 around ECD_03369

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03368 and ECD_03369 are separated by 447 nucleotidesECD_03369 and ECD_03370 are separated by 48 nucleotides ECD_03368: ECD_03368 - putative DNA-binding transcriptional response regulator, at 3,532,480 to 3,533,082 _03368 ECD_03369: ECD_03369 - LysR family putative transcriptional regulator, at 3,533,530 to 3,534,501 _03369 ECD_03370: ECD_03370 - inner membrane putative BrbK family alternate lipid exporter, at 3,534,550 to 3,535,563 _03370 Position (kb) 3533 3534 3535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3532.564 kb on + strand, within ECD_03368at 3532.674 kb on + strand, within ECD_03368at 3532.674 kb on + strand, within ECD_03368at 3532.675 kb on - strand, within ECD_03368at 3532.738 kb on - strand, within ECD_03368at 3532.738 kb on - strand, within ECD_03368at 3532.797 kb on + strand, within ECD_03368at 3532.807 kb on - strand, within ECD_03368at 3532.816 kb on + strand, within ECD_03368at 3532.898 kb on + strand, within ECD_03368at 3532.932 kb on + strand, within ECD_03368at 3532.932 kb on + strand, within ECD_03368at 3532.933 kb on - strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.937 kb on - strand, within ECD_03368at 3532.937 kb on - strand, within ECD_03368at 3532.970 kb on - strand, within ECD_03368at 3533.013 kb on + strand, within ECD_03368at 3533.046 kb on + strandat 3533.050 kb on + strandat 3533.075 kb on - strandat 3533.075 kb on - strandat 3533.219 kb on + strandat 3533.220 kb on - strandat 3533.220 kb on - strandat 3533.289 kb on - strandat 3533.289 kb on - strandat 3533.462 kb on + strandat 3533.568 kb on - strandat 3533.711 kb on + strand, within ECD_03369at 3533.711 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.795 kb on - strand, within ECD_03369at 3533.795 kb on - strand, within ECD_03369at 3533.798 kb on - strand, within ECD_03369at 3533.869 kb on - strand, within ECD_03369at 3533.869 kb on - strand, within ECD_03369at 3533.883 kb on - strand, within ECD_03369at 3533.921 kb on + strand, within ECD_03369at 3533.997 kb on - strand, within ECD_03369at 3534.000 kb on + strand, within ECD_03369at 3534.168 kb on - strand, within ECD_03369at 3534.177 kb on + strand, within ECD_03369at 3534.177 kb on + strand, within ECD_03369at 3534.177 kb on + strand, within ECD_03369at 3534.178 kb on - strand, within ECD_03369at 3534.178 kb on - strand, within ECD_03369at 3534.178 kb on - strand, within ECD_03369at 3534.195 kb on - strand, within ECD_03369at 3534.243 kb on + strand, within ECD_03369at 3534.243 kb on + strand, within ECD_03369at 3534.244 kb on - strand, within ECD_03369at 3534.367 kb on - strand, within ECD_03369at 3534.374 kb on + strand, within ECD_03369at 3534.374 kb on + strand, within ECD_03369at 3534.375 kb on - strand, within ECD_03369at 3534.377 kb on + strand, within ECD_03369at 3534.449 kb on + strandat 3534.450 kb on - strandat 3534.480 kb on - strandat 3534.509 kb on + strandat 3534.510 kb on - strandat 3534.510 kb on - strandat 3534.510 kb on - strandat 3534.517 kb on - strandat 3534.643 kb on - strandat 3534.857 kb on + strand, within ECD_03370at 3534.857 kb on + strand, within ECD_03370at 3534.951 kb on + strand, within ECD_03370at 3534.960 kb on - strand, within ECD_03370at 3535.088 kb on + strand, within ECD_03370at 3535.188 kb on + strand, within ECD_03370at 3535.274 kb on - strand, within ECD_03370at 3535.274 kb on - strand, within ECD_03370at 3535.274 kb on - strand, within ECD_03370at 3535.274 kb on - strand, within ECD_03370at 3535.359 kb on + strand, within ECD_03370at 3535.393 kb on + strand, within ECD_03370at 3535.394 kb on - strand, within ECD_03370at 3535.394 kb on - strand, within ECD_03370

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,532,564 + ECD_03368 0.14 +0.6
3,532,674 + ECD_03368 0.32 +0.5
3,532,674 + ECD_03368 0.32 -0.1
3,532,675 - ECD_03368 0.32 -0.2
3,532,738 - ECD_03368 0.43 +0.3
3,532,738 - ECD_03368 0.43 +0.9
3,532,797 + ECD_03368 0.53 -1.4
3,532,807 - ECD_03368 0.54 +0.3
3,532,816 + ECD_03368 0.56 +0.0
3,532,898 + ECD_03368 0.69 +1.9
3,532,932 + ECD_03368 0.75 +0.6
3,532,932 + ECD_03368 0.75 +0.8
3,532,933 - ECD_03368 0.75 +0.7
3,532,936 + ECD_03368 0.76 -0.1
3,532,936 + ECD_03368 0.76 -0.2
3,532,936 + ECD_03368 0.76 +0.1
3,532,936 + ECD_03368 0.76 -0.3
3,532,936 + ECD_03368 0.76 +0.9
3,532,937 - ECD_03368 0.76 +0.2
3,532,937 - ECD_03368 0.76 +0.1
3,532,970 - ECD_03368 0.81 +0.8
3,533,013 + ECD_03368 0.88 -3.1
3,533,046 + -1.0
3,533,050 + -1.1
3,533,075 - -3.5
3,533,075 - +0.7
3,533,219 + +0.6
3,533,220 - +0.0
3,533,220 - +1.3
3,533,289 - +1.0
3,533,289 - +0.6
3,533,462 + -1.9
3,533,568 - +0.4
3,533,711 + ECD_03369 0.19 -0.4
3,533,711 + ECD_03369 0.19 -0.2
3,533,794 + ECD_03369 0.27 -0.6
3,533,794 + ECD_03369 0.27 -0.7
3,533,794 + ECD_03369 0.27 -0.2
3,533,794 + ECD_03369 0.27 +0.1
3,533,795 - ECD_03369 0.27 -0.4
3,533,795 - ECD_03369 0.27 -1.4
3,533,798 - ECD_03369 0.28 -0.3
3,533,869 - ECD_03369 0.35 -0.9
3,533,869 - ECD_03369 0.35 +0.4
3,533,883 - ECD_03369 0.36 -1.4
3,533,921 + ECD_03369 0.40 +0.1
3,533,997 - ECD_03369 0.48 -0.8
3,534,000 + ECD_03369 0.48 -0.2
3,534,168 - ECD_03369 0.66 -0.8
3,534,177 + ECD_03369 0.67 -0.4
3,534,177 + ECD_03369 0.67 -0.8
3,534,177 + ECD_03369 0.67 +0.9
3,534,178 - ECD_03369 0.67 +0.1
3,534,178 - ECD_03369 0.67 -0.5
3,534,178 - ECD_03369 0.67 +0.1
3,534,195 - ECD_03369 0.68 +0.9
3,534,243 + ECD_03369 0.73 -2.1
3,534,243 + ECD_03369 0.73 -1.1
3,534,244 - ECD_03369 0.73 -0.8
3,534,367 - ECD_03369 0.86 -0.3
3,534,374 + ECD_03369 0.87 +1.2
3,534,374 + ECD_03369 0.87 -0.7
3,534,375 - ECD_03369 0.87 +0.2
3,534,377 + ECD_03369 0.87 +0.4
3,534,449 + +0.6
3,534,450 - -1.5
3,534,480 - +1.7
3,534,509 + +0.4
3,534,510 - -1.4
3,534,510 - -1.0
3,534,510 - -1.1
3,534,517 - -0.3
3,534,643 - -0.7
3,534,857 + ECD_03370 0.30 -1.1
3,534,857 + ECD_03370 0.30 -1.0
3,534,951 + ECD_03370 0.40 +0.9
3,534,960 - ECD_03370 0.40 -0.6
3,535,088 + ECD_03370 0.53 +5.1
3,535,188 + ECD_03370 0.63 -0.3
3,535,274 - ECD_03370 0.71 -0.5
3,535,274 - ECD_03370 0.71 -0.1
3,535,274 - ECD_03370 0.71 -0.6
3,535,274 - ECD_03370 0.71 -1.7
3,535,359 + ECD_03370 0.80 -1.1
3,535,393 + ECD_03370 0.83 +0.4
3,535,394 - ECD_03370 0.83 -1.6
3,535,394 - ECD_03370 0.83 +0.4

Or see this region's nucleotide sequence