Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03368 and ECD_03369 are separated by 447 nucleotides ECD_03369 and ECD_03370 are separated by 48 nucleotides
ECD_03368: ECD_03368 - putative DNA-binding transcriptional response regulator, at 3,532,480 to 3,533,082
_03368
ECD_03369: ECD_03369 - LysR family putative transcriptional regulator, at 3,533,530 to 3,534,501
_03369
ECD_03370: ECD_03370 - inner membrane putative BrbK family alternate lipid exporter, at 3,534,550 to 3,535,563
_03370
Position (kb)
3533
3534
3535 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3532.564 kb on + strand, within ECD_03368 at 3532.674 kb on + strand, within ECD_03368 at 3532.674 kb on + strand, within ECD_03368 at 3532.675 kb on - strand, within ECD_03368 at 3532.738 kb on - strand, within ECD_03368 at 3532.738 kb on - strand, within ECD_03368 at 3532.797 kb on + strand, within ECD_03368 at 3532.807 kb on - strand, within ECD_03368 at 3532.816 kb on + strand, within ECD_03368 at 3532.898 kb on + strand, within ECD_03368 at 3532.932 kb on + strand, within ECD_03368 at 3532.932 kb on + strand, within ECD_03368 at 3532.933 kb on - strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.937 kb on - strand, within ECD_03368 at 3532.937 kb on - strand, within ECD_03368 at 3532.970 kb on - strand, within ECD_03368 at 3533.013 kb on + strand, within ECD_03368 at 3533.046 kb on + strand at 3533.050 kb on + strand at 3533.075 kb on - strand at 3533.075 kb on - strand at 3533.219 kb on + strand at 3533.220 kb on - strand at 3533.220 kb on - strand at 3533.289 kb on - strand at 3533.289 kb on - strand at 3533.462 kb on + strand at 3533.568 kb on - strand at 3533.711 kb on + strand, within ECD_03369 at 3533.711 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.795 kb on - strand, within ECD_03369 at 3533.795 kb on - strand, within ECD_03369 at 3533.798 kb on - strand, within ECD_03369 at 3533.869 kb on - strand, within ECD_03369 at 3533.869 kb on - strand, within ECD_03369 at 3533.883 kb on - strand, within ECD_03369 at 3533.921 kb on + strand, within ECD_03369 at 3533.997 kb on - strand, within ECD_03369 at 3534.000 kb on + strand, within ECD_03369 at 3534.168 kb on - strand, within ECD_03369 at 3534.177 kb on + strand, within ECD_03369 at 3534.177 kb on + strand, within ECD_03369 at 3534.177 kb on + strand, within ECD_03369 at 3534.178 kb on - strand, within ECD_03369 at 3534.178 kb on - strand, within ECD_03369 at 3534.178 kb on - strand, within ECD_03369 at 3534.195 kb on - strand, within ECD_03369 at 3534.243 kb on + strand, within ECD_03369 at 3534.243 kb on + strand, within ECD_03369 at 3534.244 kb on - strand, within ECD_03369 at 3534.367 kb on - strand, within ECD_03369 at 3534.374 kb on + strand, within ECD_03369 at 3534.374 kb on + strand, within ECD_03369 at 3534.375 kb on - strand, within ECD_03369 at 3534.377 kb on + strand, within ECD_03369 at 3534.449 kb on + strand at 3534.450 kb on - strand at 3534.480 kb on - strand at 3534.509 kb on + strand at 3534.510 kb on - strand at 3534.510 kb on - strand at 3534.510 kb on - strand at 3534.517 kb on - strand at 3534.643 kb on - strand at 3534.857 kb on + strand, within ECD_03370 at 3534.857 kb on + strand, within ECD_03370 at 3534.951 kb on + strand, within ECD_03370 at 3534.960 kb on - strand, within ECD_03370 at 3535.088 kb on + strand, within ECD_03370 at 3535.188 kb on + strand, within ECD_03370 at 3535.274 kb on - strand, within ECD_03370 at 3535.274 kb on - strand, within ECD_03370 at 3535.274 kb on - strand, within ECD_03370 at 3535.274 kb on - strand, within ECD_03370 at 3535.359 kb on + strand, within ECD_03370 at 3535.393 kb on + strand, within ECD_03370 at 3535.394 kb on - strand, within ECD_03370 at 3535.394 kb on - strand, within ECD_03370
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,532,564 + ECD_03368 0.14 +0.6 3,532,674 + ECD_03368 0.32 +0.5 3,532,674 + ECD_03368 0.32 -0.1 3,532,675 - ECD_03368 0.32 -0.2 3,532,738 - ECD_03368 0.43 +0.3 3,532,738 - ECD_03368 0.43 +0.9 3,532,797 + ECD_03368 0.53 -1.4 3,532,807 - ECD_03368 0.54 +0.3 3,532,816 + ECD_03368 0.56 +0.0 3,532,898 + ECD_03368 0.69 +1.9 3,532,932 + ECD_03368 0.75 +0.6 3,532,932 + ECD_03368 0.75 +0.8 3,532,933 - ECD_03368 0.75 +0.7 3,532,936 + ECD_03368 0.76 -0.1 3,532,936 + ECD_03368 0.76 -0.2 3,532,936 + ECD_03368 0.76 +0.1 3,532,936 + ECD_03368 0.76 -0.3 3,532,936 + ECD_03368 0.76 +0.9 3,532,937 - ECD_03368 0.76 +0.2 3,532,937 - ECD_03368 0.76 +0.1 3,532,970 - ECD_03368 0.81 +0.8 3,533,013 + ECD_03368 0.88 -3.1 3,533,046 + -1.0 3,533,050 + -1.1 3,533,075 - -3.5 3,533,075 - +0.7 3,533,219 + +0.6 3,533,220 - +0.0 3,533,220 - +1.3 3,533,289 - +1.0 3,533,289 - +0.6 3,533,462 + -1.9 3,533,568 - +0.4 3,533,711 + ECD_03369 0.19 -0.4 3,533,711 + ECD_03369 0.19 -0.2 3,533,794 + ECD_03369 0.27 -0.6 3,533,794 + ECD_03369 0.27 -0.7 3,533,794 + ECD_03369 0.27 -0.2 3,533,794 + ECD_03369 0.27 +0.1 3,533,795 - ECD_03369 0.27 -0.4 3,533,795 - ECD_03369 0.27 -1.4 3,533,798 - ECD_03369 0.28 -0.3 3,533,869 - ECD_03369 0.35 -0.9 3,533,869 - ECD_03369 0.35 +0.4 3,533,883 - ECD_03369 0.36 -1.4 3,533,921 + ECD_03369 0.40 +0.1 3,533,997 - ECD_03369 0.48 -0.8 3,534,000 + ECD_03369 0.48 -0.2 3,534,168 - ECD_03369 0.66 -0.8 3,534,177 + ECD_03369 0.67 -0.4 3,534,177 + ECD_03369 0.67 -0.8 3,534,177 + ECD_03369 0.67 +0.9 3,534,178 - ECD_03369 0.67 +0.1 3,534,178 - ECD_03369 0.67 -0.5 3,534,178 - ECD_03369 0.67 +0.1 3,534,195 - ECD_03369 0.68 +0.9 3,534,243 + ECD_03369 0.73 -2.1 3,534,243 + ECD_03369 0.73 -1.1 3,534,244 - ECD_03369 0.73 -0.8 3,534,367 - ECD_03369 0.86 -0.3 3,534,374 + ECD_03369 0.87 +1.2 3,534,374 + ECD_03369 0.87 -0.7 3,534,375 - ECD_03369 0.87 +0.2 3,534,377 + ECD_03369 0.87 +0.4 3,534,449 + +0.6 3,534,450 - -1.5 3,534,480 - +1.7 3,534,509 + +0.4 3,534,510 - -1.4 3,534,510 - -1.0 3,534,510 - -1.1 3,534,517 - -0.3 3,534,643 - -0.7 3,534,857 + ECD_03370 0.30 -1.1 3,534,857 + ECD_03370 0.30 -1.0 3,534,951 + ECD_03370 0.40 +0.9 3,534,960 - ECD_03370 0.40 -0.6 3,535,088 + ECD_03370 0.53 +5.1 3,535,188 + ECD_03370 0.63 -0.3 3,535,274 - ECD_03370 0.71 -0.5 3,535,274 - ECD_03370 0.71 -0.1 3,535,274 - ECD_03370 0.71 -0.6 3,535,274 - ECD_03370 0.71 -1.7 3,535,359 + ECD_03370 0.80 -1.1 3,535,393 + ECD_03370 0.83 +0.4 3,535,394 - ECD_03370 0.83 -1.6 3,535,394 - ECD_03370 0.83 +0.4
Or see this region's nucleotide sequence