Strain Fitness in Escherichia coli BL21 around ECD_03356

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03354 and ECD_03355 are separated by 155 nucleotidesECD_03355 and ECD_03356 are separated by 41 nucleotidesECD_03356 and ECD_03357 are separated by 63 nucleotidesECD_03357 and ECD_03358 are separated by 115 nucleotides ECD_03354: ECD_03354 - outer membrane lipoprotein, at 3,515,148 to 3,515,714 _03354 ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400 _03355 ECD_03356: ECD_03356 - putative Mg(2+) transport ATPase, inner membrane protein, at 3,516,442 to 3,517,089 _03356 ECD_03357: ECD_03357 - acid-resistance protein, at 3,517,153 to 3,517,479 _03357 ECD_03358: ECD_03358 - stress response protein acid-resistance protein, at 3,517,595 to 3,517,927 _03358 Position (kb) 3516 3517 3518Strain fitness (log2 ratio) -1 0 1 2at 3515.523 kb on - strand, within ECD_03354at 3515.528 kb on + strand, within ECD_03354at 3515.538 kb on + strand, within ECD_03354at 3515.539 kb on - strand, within ECD_03354at 3515.540 kb on + strand, within ECD_03354at 3515.540 kb on + strand, within ECD_03354at 3515.540 kb on + strand, within ECD_03354at 3515.558 kb on + strand, within ECD_03354at 3515.607 kb on + strand, within ECD_03354at 3515.607 kb on + strand, within ECD_03354at 3515.607 kb on + strand, within ECD_03354at 3515.608 kb on - strand, within ECD_03354at 3515.671 kb on - strandat 3515.775 kb on - strandat 3516.145 kb on + strand, within ECD_03355at 3516.369 kb on + strandat 3516.383 kb on - strandat 3516.447 kb on + strandat 3516.729 kb on - strand, within ECD_03356at 3516.729 kb on - strand, within ECD_03356at 3516.729 kb on - strand, within ECD_03356at 3516.769 kb on + strand, within ECD_03356at 3516.769 kb on + strand, within ECD_03356at 3517.290 kb on - strand, within ECD_03357at 3517.682 kb on - strand, within ECD_03358at 3517.946 kb on - strandat 3518.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,515,523 - ECD_03354 0.66 -0.6
3,515,528 + ECD_03354 0.67 -0.2
3,515,538 + ECD_03354 0.69 +0.4
3,515,539 - ECD_03354 0.69 +0.6
3,515,540 + ECD_03354 0.69 +0.7
3,515,540 + ECD_03354 0.69 +0.8
3,515,540 + ECD_03354 0.69 +1.5
3,515,558 + ECD_03354 0.72 +1.0
3,515,607 + ECD_03354 0.81 +1.6
3,515,607 + ECD_03354 0.81 +0.5
3,515,607 + ECD_03354 0.81 +0.2
3,515,608 - ECD_03354 0.81 +0.8
3,515,671 - +0.2
3,515,775 - +1.2
3,516,145 + ECD_03355 0.52 +0.5
3,516,369 + +0.3
3,516,383 - -0.2
3,516,447 + -0.5
3,516,729 - ECD_03356 0.44 +0.3
3,516,729 - ECD_03356 0.44 +1.8
3,516,729 - ECD_03356 0.44 +1.1
3,516,769 + ECD_03356 0.50 +2.0
3,516,769 + ECD_03356 0.50 +1.4
3,517,290 - ECD_03357 0.42 +1.0
3,517,682 - ECD_03358 0.26 +0.8
3,517,946 - +1.2
3,518,007 - +1.3

Or see this region's nucleotide sequence