Strain Fitness in Escherichia coli BL21 around ECD_03325

Experiment: Laval1257

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03323 and ECD_03324 are separated by 54 nucleotidesECD_03324 and ECD_03325 are separated by 110 nucleotidesECD_03325 and ECD_03326 overlap by 1 nucleotidesECD_03326 and ECD_03327 overlap by 4 nucleotides ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298 _03323 ECD_03324: ECD_03324 - 4'-phosphopantetheinyl transferase, at 3,475,353 to 3,475,940 _03324 ECD_03325: ECD_03325 - nickel/heme ABC transporter periplasmic binding protein, at 3,476,051 to 3,477,625 _03325 ECD_03326: ECD_03326 - nickel ABC transporter permease, at 3,477,625 to 3,478,569 _03326 ECD_03327: ECD_03327 - nickel ABC transporter permease, at 3,478,566 to 3,479,399 _03327 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -3 -2 -1 0 1at 3475.054 kb on + strand, within ECD_03323at 3475.085 kb on - strand, within ECD_03323at 3475.132 kb on + strand, within ECD_03323at 3475.133 kb on - strand, within ECD_03323at 3475.147 kb on + strand, within ECD_03323at 3475.148 kb on - strand, within ECD_03323at 3475.183 kb on + strand, within ECD_03323at 3475.184 kb on - strand, within ECD_03323at 3475.184 kb on - strand, within ECD_03323at 3475.311 kb on + strandat 3475.311 kb on + strandat 3475.311 kb on + strandat 3475.311 kb on + strandat 3475.312 kb on - strandat 3475.312 kb on - strandat 3475.353 kb on - strandat 3475.356 kb on + strandat 3475.356 kb on + strandat 3475.357 kb on - strandat 3475.357 kb on - strandat 3475.510 kb on - strand, within ECD_03324at 3475.510 kb on - strand, within ECD_03324at 3475.510 kb on - strand, within ECD_03324at 3475.510 kb on - strand, within ECD_03324at 3475.811 kb on - strand, within ECD_03324at 3475.822 kb on - strand, within ECD_03324at 3475.886 kb on + strandat 3475.895 kb on + strandat 3475.896 kb on - strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.964 kb on - strandat 3475.964 kb on - strandat 3475.964 kb on - strandat 3475.980 kb on + strandat 3475.981 kb on - strandat 3475.981 kb on - strandat 3475.997 kb on - strandat 3476.001 kb on - strandat 3476.012 kb on - strandat 3476.016 kb on - strandat 3476.016 kb on - strandat 3476.016 kb on - strandat 3476.016 kb on - strandat 3476.034 kb on - strandat 3476.076 kb on + strandat 3476.217 kb on - strand, within ECD_03325at 3476.338 kb on + strand, within ECD_03325at 3476.459 kb on - strand, within ECD_03325at 3476.492 kb on + strand, within ECD_03325at 3476.493 kb on - strand, within ECD_03325at 3476.493 kb on - strand, within ECD_03325at 3476.496 kb on - strand, within ECD_03325at 3476.585 kb on - strand, within ECD_03325at 3476.585 kb on - strand, within ECD_03325at 3476.639 kb on + strand, within ECD_03325at 3476.667 kb on - strand, within ECD_03325at 3476.784 kb on + strand, within ECD_03325at 3476.785 kb on - strand, within ECD_03325at 3476.787 kb on + strand, within ECD_03325at 3476.797 kb on + strand, within ECD_03325at 3476.813 kb on - strand, within ECD_03325at 3476.828 kb on + strand, within ECD_03325at 3476.924 kb on - strand, within ECD_03325at 3476.924 kb on - strand, within ECD_03325at 3476.967 kb on - strand, within ECD_03325at 3476.967 kb on - strand, within ECD_03325at 3477.014 kb on + strand, within ECD_03325at 3477.256 kb on + strand, within ECD_03325at 3477.257 kb on - strand, within ECD_03325at 3477.260 kb on + strand, within ECD_03325at 3477.260 kb on + strand, within ECD_03325at 3477.260 kb on + strand, within ECD_03325at 3477.260 kb on + strand, within ECD_03325at 3477.261 kb on - strand, within ECD_03325at 3477.320 kb on + strand, within ECD_03325at 3477.354 kb on + strand, within ECD_03325at 3477.515 kb on - strandat 3477.521 kb on + strandat 3477.521 kb on + strandat 3477.522 kb on - strandat 3477.522 kb on - strandat 3477.522 kb on - strandat 3477.522 kb on - strandat 3477.522 kb on - strandat 3477.522 kb on - strandat 3477.569 kb on + strandat 3477.608 kb on - strandat 3477.608 kb on - strandat 3477.638 kb on + strandat 3477.638 kb on + strandat 3477.638 kb on + strandat 3477.638 kb on + strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.736 kb on + strand, within ECD_03326at 3477.817 kb on + strand, within ECD_03326at 3477.817 kb on + strand, within ECD_03326at 3477.817 kb on + strand, within ECD_03326at 3477.904 kb on - strand, within ECD_03326at 3477.954 kb on - strand, within ECD_03326at 3478.028 kb on + strand, within ECD_03326at 3478.105 kb on + strand, within ECD_03326at 3478.179 kb on + strand, within ECD_03326at 3478.179 kb on + strand, within ECD_03326at 3478.194 kb on + strand, within ECD_03326at 3478.465 kb on - strand, within ECD_03326at 3478.465 kb on - strand, within ECD_03326at 3478.465 kb on - strand, within ECD_03326

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
remove
3,475,054 + ECD_03323 0.77 -0.1
3,475,085 - ECD_03323 0.80 -0.1
3,475,132 + ECD_03323 0.84 -0.7
3,475,133 - ECD_03323 0.84 +1.0
3,475,147 + ECD_03323 0.86 +0.0
3,475,148 - ECD_03323 0.86 -1.1
3,475,183 + ECD_03323 0.89 -0.8
3,475,184 - ECD_03323 0.89 -0.9
3,475,184 - ECD_03323 0.89 -0.4
3,475,311 + -0.2
3,475,311 + +0.1
3,475,311 + -1.9
3,475,311 + -1.3
3,475,312 - -0.0
3,475,312 - -0.4
3,475,353 - -0.1
3,475,356 + -0.1
3,475,356 + -0.7
3,475,357 - -2.4
3,475,357 - +0.6
3,475,510 - ECD_03324 0.27 -0.9
3,475,510 - ECD_03324 0.27 +1.4
3,475,510 - ECD_03324 0.27 -1.6
3,475,510 - ECD_03324 0.27 -0.1
3,475,811 - ECD_03324 0.78 +0.1
3,475,822 - ECD_03324 0.80 -0.3
3,475,886 + +0.4
3,475,895 + -0.4
3,475,896 - -1.0
3,475,963 + -0.3
3,475,963 + +0.5
3,475,963 + -0.3
3,475,963 + -0.4
3,475,963 + +0.6
3,475,963 + -0.5
3,475,963 + +0.3
3,475,964 - +0.5
3,475,964 - +0.4
3,475,964 - -1.7
3,475,980 + -0.0
3,475,981 - +1.6
3,475,981 - +0.0
3,475,997 - +0.2
3,476,001 - -0.2
3,476,012 - -0.3
3,476,016 - -0.4
3,476,016 - -1.2
3,476,016 - +0.0
3,476,016 - +0.6
3,476,034 - -1.0
3,476,076 + -1.3
3,476,217 - ECD_03325 0.11 -0.6
3,476,338 + ECD_03325 0.18 -2.2
3,476,459 - ECD_03325 0.26 -1.7
3,476,492 + ECD_03325 0.28 -1.2
3,476,493 - ECD_03325 0.28 -1.2
3,476,493 - ECD_03325 0.28 -0.4
3,476,496 - ECD_03325 0.28 -2.2
3,476,585 - ECD_03325 0.34 +0.0
3,476,585 - ECD_03325 0.34 -0.6
3,476,639 + ECD_03325 0.37 -0.9
3,476,667 - ECD_03325 0.39 -0.0
3,476,784 + ECD_03325 0.47 +0.1
3,476,785 - ECD_03325 0.47 -0.9
3,476,787 + ECD_03325 0.47 -0.4
3,476,797 + ECD_03325 0.47 +1.0
3,476,813 - ECD_03325 0.48 -0.8
3,476,828 + ECD_03325 0.49 +0.0
3,476,924 - ECD_03325 0.55 -1.5
3,476,924 - ECD_03325 0.55 +1.0
3,476,967 - ECD_03325 0.58 -1.7
3,476,967 - ECD_03325 0.58 -2.0
3,477,014 + ECD_03325 0.61 -0.3
3,477,256 + ECD_03325 0.77 -0.6
3,477,257 - ECD_03325 0.77 -2.0
3,477,260 + ECD_03325 0.77 +0.1
3,477,260 + ECD_03325 0.77 -0.5
3,477,260 + ECD_03325 0.77 -0.7
3,477,260 + ECD_03325 0.77 -0.9
3,477,261 - ECD_03325 0.77 -1.0
3,477,320 + ECD_03325 0.81 -0.8
3,477,354 + ECD_03325 0.83 +1.3
3,477,515 - +0.3
3,477,521 + -0.3
3,477,521 + -0.7
3,477,522 - -0.1
3,477,522 - +0.7
3,477,522 - -0.5
3,477,522 - -0.4
3,477,522 - -0.6
3,477,522 - -0.8
3,477,569 + -2.6
3,477,608 - -1.4
3,477,608 - +0.3
3,477,638 + -0.9
3,477,638 + +1.0
3,477,638 + -3.3
3,477,638 + +0.7
3,477,639 - -0.2
3,477,639 - -0.7
3,477,639 - -0.9
3,477,639 - -1.3
3,477,639 - -1.0
3,477,639 - +0.2
3,477,639 - -1.9
3,477,736 + ECD_03326 0.12 -0.9
3,477,817 + ECD_03326 0.20 -1.4
3,477,817 + ECD_03326 0.20 -0.4
3,477,817 + ECD_03326 0.20 +0.2
3,477,904 - ECD_03326 0.30 -0.4
3,477,954 - ECD_03326 0.35 -0.4
3,478,028 + ECD_03326 0.43 -1.0
3,478,105 + ECD_03326 0.51 +0.3
3,478,179 + ECD_03326 0.59 +1.0
3,478,179 + ECD_03326 0.59 -3.2
3,478,194 + ECD_03326 0.60 +0.3
3,478,465 - ECD_03326 0.89 -2.8
3,478,465 - ECD_03326 0.89 -1.4
3,478,465 - ECD_03326 0.89 +0.2

Or see this region's nucleotide sequence