Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03323 and ECD_03324 are separated by 54 nucleotides ECD_03324 and ECD_03325 are separated by 110 nucleotides ECD_03325 and ECD_03326 overlap by 1 nucleotides ECD_03326 and ECD_03327 overlap by 4 nucleotides
ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298
_03323
ECD_03324: ECD_03324 - 4'-phosphopantetheinyl transferase, at 3,475,353 to 3,475,940
_03324
ECD_03325: ECD_03325 - nickel/heme ABC transporter periplasmic binding protein, at 3,476,051 to 3,477,625
_03325
ECD_03326: ECD_03326 - nickel ABC transporter permease, at 3,477,625 to 3,478,569
_03326
ECD_03327: ECD_03327 - nickel ABC transporter permease, at 3,478,566 to 3,479,399
_03327
Position (kb)
3476
3477
3478 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3475.054 kb on + strand, within ECD_03323 at 3475.085 kb on - strand, within ECD_03323 at 3475.132 kb on + strand, within ECD_03323 at 3475.133 kb on - strand, within ECD_03323 at 3475.147 kb on + strand, within ECD_03323 at 3475.148 kb on - strand, within ECD_03323 at 3475.183 kb on + strand, within ECD_03323 at 3475.184 kb on - strand, within ECD_03323 at 3475.184 kb on - strand, within ECD_03323 at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.312 kb on - strand at 3475.312 kb on - strand at 3475.353 kb on - strand at 3475.356 kb on + strand at 3475.356 kb on + strand at 3475.357 kb on - strand at 3475.357 kb on - strand at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.811 kb on - strand, within ECD_03324 at 3475.822 kb on - strand, within ECD_03324 at 3475.886 kb on + strand at 3475.895 kb on + strand at 3475.896 kb on - strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.964 kb on - strand at 3475.964 kb on - strand at 3475.964 kb on - strand at 3475.980 kb on + strand at 3475.981 kb on - strand at 3475.981 kb on - strand at 3475.997 kb on - strand at 3476.001 kb on - strand at 3476.012 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.034 kb on - strand at 3476.076 kb on + strand at 3476.217 kb on - strand, within ECD_03325 at 3476.338 kb on + strand, within ECD_03325 at 3476.459 kb on - strand, within ECD_03325 at 3476.492 kb on + strand, within ECD_03325 at 3476.493 kb on - strand, within ECD_03325 at 3476.493 kb on - strand, within ECD_03325 at 3476.496 kb on - strand, within ECD_03325 at 3476.585 kb on - strand, within ECD_03325 at 3476.585 kb on - strand, within ECD_03325 at 3476.639 kb on + strand, within ECD_03325 at 3476.667 kb on - strand, within ECD_03325 at 3476.784 kb on + strand, within ECD_03325 at 3476.785 kb on - strand, within ECD_03325 at 3476.787 kb on + strand, within ECD_03325 at 3476.797 kb on + strand, within ECD_03325 at 3476.813 kb on - strand, within ECD_03325 at 3476.828 kb on + strand, within ECD_03325 at 3476.924 kb on - strand, within ECD_03325 at 3476.924 kb on - strand, within ECD_03325 at 3476.967 kb on - strand, within ECD_03325 at 3476.967 kb on - strand, within ECD_03325 at 3477.014 kb on + strand, within ECD_03325 at 3477.256 kb on + strand, within ECD_03325 at 3477.257 kb on - strand, within ECD_03325 at 3477.260 kb on + strand, within ECD_03325 at 3477.260 kb on + strand, within ECD_03325 at 3477.260 kb on + strand, within ECD_03325 at 3477.260 kb on + strand, within ECD_03325 at 3477.261 kb on - strand, within ECD_03325 at 3477.320 kb on + strand, within ECD_03325 at 3477.354 kb on + strand, within ECD_03325 at 3477.515 kb on - strand at 3477.521 kb on + strand at 3477.521 kb on + strand at 3477.522 kb on - strand at 3477.522 kb on - strand at 3477.522 kb on - strand at 3477.522 kb on - strand at 3477.522 kb on - strand at 3477.522 kb on - strand at 3477.569 kb on + strand at 3477.608 kb on - strand at 3477.608 kb on - strand at 3477.638 kb on + strand at 3477.638 kb on + strand at 3477.638 kb on + strand at 3477.638 kb on + strand at 3477.639 kb on - strand at 3477.639 kb on - strand at 3477.639 kb on - strand at 3477.639 kb on - strand at 3477.639 kb on - strand at 3477.639 kb on - strand at 3477.639 kb on - strand at 3477.736 kb on + strand, within ECD_03326 at 3477.817 kb on + strand, within ECD_03326 at 3477.817 kb on + strand, within ECD_03326 at 3477.817 kb on + strand, within ECD_03326 at 3477.904 kb on - strand, within ECD_03326 at 3477.954 kb on - strand, within ECD_03326 at 3478.028 kb on + strand, within ECD_03326 at 3478.105 kb on + strand, within ECD_03326 at 3478.179 kb on + strand, within ECD_03326 at 3478.179 kb on + strand, within ECD_03326 at 3478.194 kb on + strand, within ECD_03326 at 3478.465 kb on - strand, within ECD_03326 at 3478.465 kb on - strand, within ECD_03326 at 3478.465 kb on - strand, within ECD_03326
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,475,054 + ECD_03323 0.77 -0.1 3,475,085 - ECD_03323 0.80 -0.1 3,475,132 + ECD_03323 0.84 -0.7 3,475,133 - ECD_03323 0.84 +1.0 3,475,147 + ECD_03323 0.86 +0.0 3,475,148 - ECD_03323 0.86 -1.1 3,475,183 + ECD_03323 0.89 -0.8 3,475,184 - ECD_03323 0.89 -0.9 3,475,184 - ECD_03323 0.89 -0.4 3,475,311 + -0.2 3,475,311 + +0.1 3,475,311 + -1.9 3,475,311 + -1.3 3,475,312 - -0.0 3,475,312 - -0.4 3,475,353 - -0.1 3,475,356 + -0.1 3,475,356 + -0.7 3,475,357 - -2.4 3,475,357 - +0.6 3,475,510 - ECD_03324 0.27 -0.9 3,475,510 - ECD_03324 0.27 +1.4 3,475,510 - ECD_03324 0.27 -1.6 3,475,510 - ECD_03324 0.27 -0.1 3,475,811 - ECD_03324 0.78 +0.1 3,475,822 - ECD_03324 0.80 -0.3 3,475,886 + +0.4 3,475,895 + -0.4 3,475,896 - -1.0 3,475,963 + -0.3 3,475,963 + +0.5 3,475,963 + -0.3 3,475,963 + -0.4 3,475,963 + +0.6 3,475,963 + -0.5 3,475,963 + +0.3 3,475,964 - +0.5 3,475,964 - +0.4 3,475,964 - -1.7 3,475,980 + -0.0 3,475,981 - +1.6 3,475,981 - +0.0 3,475,997 - +0.2 3,476,001 - -0.2 3,476,012 - -0.3 3,476,016 - -0.4 3,476,016 - -1.2 3,476,016 - +0.0 3,476,016 - +0.6 3,476,034 - -1.0 3,476,076 + -1.3 3,476,217 - ECD_03325 0.11 -0.6 3,476,338 + ECD_03325 0.18 -2.2 3,476,459 - ECD_03325 0.26 -1.7 3,476,492 + ECD_03325 0.28 -1.2 3,476,493 - ECD_03325 0.28 -1.2 3,476,493 - ECD_03325 0.28 -0.4 3,476,496 - ECD_03325 0.28 -2.2 3,476,585 - ECD_03325 0.34 +0.0 3,476,585 - ECD_03325 0.34 -0.6 3,476,639 + ECD_03325 0.37 -0.9 3,476,667 - ECD_03325 0.39 -0.0 3,476,784 + ECD_03325 0.47 +0.1 3,476,785 - ECD_03325 0.47 -0.9 3,476,787 + ECD_03325 0.47 -0.4 3,476,797 + ECD_03325 0.47 +1.0 3,476,813 - ECD_03325 0.48 -0.8 3,476,828 + ECD_03325 0.49 +0.0 3,476,924 - ECD_03325 0.55 -1.5 3,476,924 - ECD_03325 0.55 +1.0 3,476,967 - ECD_03325 0.58 -1.7 3,476,967 - ECD_03325 0.58 -2.0 3,477,014 + ECD_03325 0.61 -0.3 3,477,256 + ECD_03325 0.77 -0.6 3,477,257 - ECD_03325 0.77 -2.0 3,477,260 + ECD_03325 0.77 +0.1 3,477,260 + ECD_03325 0.77 -0.5 3,477,260 + ECD_03325 0.77 -0.7 3,477,260 + ECD_03325 0.77 -0.9 3,477,261 - ECD_03325 0.77 -1.0 3,477,320 + ECD_03325 0.81 -0.8 3,477,354 + ECD_03325 0.83 +1.3 3,477,515 - +0.3 3,477,521 + -0.3 3,477,521 + -0.7 3,477,522 - -0.1 3,477,522 - +0.7 3,477,522 - -0.5 3,477,522 - -0.4 3,477,522 - -0.6 3,477,522 - -0.8 3,477,569 + -2.6 3,477,608 - -1.4 3,477,608 - +0.3 3,477,638 + -0.9 3,477,638 + +1.0 3,477,638 + -3.3 3,477,638 + +0.7 3,477,639 - -0.2 3,477,639 - -0.7 3,477,639 - -0.9 3,477,639 - -1.3 3,477,639 - -1.0 3,477,639 - +0.2 3,477,639 - -1.9 3,477,736 + ECD_03326 0.12 -0.9 3,477,817 + ECD_03326 0.20 -1.4 3,477,817 + ECD_03326 0.20 -0.4 3,477,817 + ECD_03326 0.20 +0.2 3,477,904 - ECD_03326 0.30 -0.4 3,477,954 - ECD_03326 0.35 -0.4 3,478,028 + ECD_03326 0.43 -1.0 3,478,105 + ECD_03326 0.51 +0.3 3,478,179 + ECD_03326 0.59 +1.0 3,478,179 + ECD_03326 0.59 -3.2 3,478,194 + ECD_03326 0.60 +0.3 3,478,465 - ECD_03326 0.89 -2.8 3,478,465 - ECD_03326 0.89 -1.4 3,478,465 - ECD_03326 0.89 +0.2
Or see this region's nucleotide sequence