Strain Fitness in Escherichia coli BL21 around ECD_03309

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03308 and ECD_03309 are separated by 198 nucleotidesECD_03309 and ECD_03310 are separated by 270 nucleotides ECD_03308: ECD_03308 - PanD autocleavage accelerator, panothenate synthesis, at 3,460,354 to 3,460,737 _03308 ECD_03309: ECD_03309 - branched-chain amino acid ABC transporter periplasmic binding protein, at 3,460,936 to 3,462,039 _03309 ECD_03310: ECD_03310 - RNA polymerase, sigma 32 (sigma H) factor, at 3,462,310 to 3,463,164 _03310 Position (kb) 3460 3461 3462 3463Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3459.980 kb on - strandat 3460.245 kb on - strandat 3460.340 kb on + strandat 3460.430 kb on - strand, within ECD_03308at 3460.467 kb on + strand, within ECD_03308at 3460.591 kb on + strand, within ECD_03308at 3460.704 kb on + strandat 3460.862 kb on + strandat 3460.888 kb on + strandat 3460.888 kb on + strandat 3460.898 kb on + strandat 3460.930 kb on + strandat 3460.937 kb on + strandat 3460.938 kb on - strandat 3460.938 kb on - strandat 3460.979 kb on - strandat 3461.129 kb on + strand, within ECD_03309at 3461.129 kb on + strand, within ECD_03309at 3461.216 kb on + strand, within ECD_03309at 3461.217 kb on - strand, within ECD_03309at 3461.217 kb on - strand, within ECD_03309at 3461.269 kb on - strand, within ECD_03309at 3461.375 kb on + strand, within ECD_03309at 3461.469 kb on + strand, within ECD_03309at 3461.551 kb on - strand, within ECD_03309at 3461.551 kb on - strand, within ECD_03309at 3461.577 kb on + strand, within ECD_03309at 3461.578 kb on - strand, within ECD_03309at 3461.578 kb on - strand, within ECD_03309at 3461.578 kb on - strand, within ECD_03309at 3461.579 kb on + strand, within ECD_03309at 3461.579 kb on + strand, within ECD_03309at 3461.579 kb on + strand, within ECD_03309at 3461.580 kb on - strand, within ECD_03309at 3461.639 kb on + strand, within ECD_03309at 3461.639 kb on + strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.643 kb on + strand, within ECD_03309at 3461.686 kb on + strand, within ECD_03309at 3461.705 kb on + strand, within ECD_03309at 3461.757 kb on - strand, within ECD_03309at 3461.761 kb on - strand, within ECD_03309at 3461.825 kb on + strand, within ECD_03309at 3461.826 kb on - strand, within ECD_03309at 3461.919 kb on - strand, within ECD_03309at 3461.961 kb on + strandat 3461.962 kb on - strandat 3461.964 kb on + strandat 3461.965 kb on - strandat 3461.983 kb on - strandat 3461.983 kb on - strandat 3462.032 kb on - strandat 3462.034 kb on - strandat 3462.068 kb on - strandat 3462.139 kb on - strandat 3462.244 kb on - strandat 3462.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,459,980 - -0.4
3,460,245 - -0.6
3,460,340 + -1.5
3,460,430 - ECD_03308 0.20 -1.3
3,460,467 + ECD_03308 0.29 -2.6
3,460,591 + ECD_03308 0.62 -1.6
3,460,704 + +1.0
3,460,862 + -0.2
3,460,888 + -0.9
3,460,888 + -0.8
3,460,898 + -0.6
3,460,930 + -0.1
3,460,937 + +0.4
3,460,938 - -0.3
3,460,938 - -2.2
3,460,979 - -2.1
3,461,129 + ECD_03309 0.17 -0.4
3,461,129 + ECD_03309 0.17 -0.6
3,461,216 + ECD_03309 0.25 -3.0
3,461,217 - ECD_03309 0.25 +0.1
3,461,217 - ECD_03309 0.25 -1.2
3,461,269 - ECD_03309 0.30 +0.3
3,461,375 + ECD_03309 0.40 +0.5
3,461,469 + ECD_03309 0.48 -0.1
3,461,551 - ECD_03309 0.56 +0.6
3,461,551 - ECD_03309 0.56 -0.3
3,461,577 + ECD_03309 0.58 +0.3
3,461,578 - ECD_03309 0.58 -0.9
3,461,578 - ECD_03309 0.58 +0.0
3,461,578 - ECD_03309 0.58 -0.3
3,461,579 + ECD_03309 0.58 -1.4
3,461,579 + ECD_03309 0.58 -1.2
3,461,579 + ECD_03309 0.58 +0.8
3,461,580 - ECD_03309 0.58 -1.0
3,461,639 + ECD_03309 0.64 +0.3
3,461,639 + ECD_03309 0.64 +1.0
3,461,640 - ECD_03309 0.64 -3.4
3,461,640 - ECD_03309 0.64 -1.2
3,461,640 - ECD_03309 0.64 -0.3
3,461,640 - ECD_03309 0.64 +1.8
3,461,643 + ECD_03309 0.64 -0.6
3,461,686 + ECD_03309 0.68 +0.4
3,461,705 + ECD_03309 0.70 +0.7
3,461,757 - ECD_03309 0.74 -0.3
3,461,761 - ECD_03309 0.75 -0.6
3,461,825 + ECD_03309 0.81 -0.0
3,461,826 - ECD_03309 0.81 +6.4
3,461,919 - ECD_03309 0.89 +0.7
3,461,961 + +0.1
3,461,962 - +2.0
3,461,964 + -1.0
3,461,965 - -0.0
3,461,983 - +6.0
3,461,983 - +0.5
3,462,032 - -0.6
3,462,034 - -0.2
3,462,068 - -0.8
3,462,139 - -0.8
3,462,244 - -1.1
3,462,312 - -0.0

Or see this region's nucleotide sequence