Strain Fitness in Escherichia coli BL21 around ECD_03055

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03054 and ECD_03055 are separated by 54 nucleotidesECD_03055 and ECD_03056 are separated by 159 nucleotidesECD_03056 and ECD_03057 overlap by 1 nucleotides ECD_03054: ECD_03054 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,203,735 to 3,204,994 _03054 ECD_03055: ECD_03055 - acid stress protein; putative BolA family transcriptional regulator, at 3,205,049 to 3,205,303 _03055 ECD_03056: ECD_03056 - ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component, at 3,205,463 to 3,205,756 _03056 ECD_03057: ECD_03057 - ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein, at 3,205,756 to 3,206,391 _03057 Position (kb) 3205 3206Strain fitness (log2 ratio) -1 0 1 2 3at 3205.096 kb on - strand, within ECD_03055at 3205.136 kb on - strand, within ECD_03055at 3205.138 kb on - strand, within ECD_03055at 3205.138 kb on - strand, within ECD_03055at 3205.138 kb on - strand, within ECD_03055at 3205.138 kb on - strand, within ECD_03055at 3205.138 kb on - strand, within ECD_03055at 3205.138 kb on - strand, within ECD_03055at 3205.327 kb on - strandat 3205.345 kb on - strandat 3205.366 kb on - strandat 3205.370 kb on - strandat 3205.512 kb on + strand, within ECD_03056at 3205.512 kb on + strand, within ECD_03056at 3205.512 kb on + strand, within ECD_03056at 3205.513 kb on - strand, within ECD_03056at 3205.513 kb on - strand, within ECD_03056at 3205.574 kb on - strand, within ECD_03056at 3205.640 kb on - strand, within ECD_03056at 3205.833 kb on + strand, within ECD_03057at 3205.901 kb on + strand, within ECD_03057at 3205.901 kb on + strand, within ECD_03057at 3205.902 kb on - strand, within ECD_03057at 3206.043 kb on - strand, within ECD_03057at 3206.043 kb on - strand, within ECD_03057at 3206.043 kb on - strand, within ECD_03057at 3206.057 kb on + strand, within ECD_03057at 3206.057 kb on + strand, within ECD_03057at 3206.058 kb on - strand, within ECD_03057at 3206.058 kb on - strand, within ECD_03057at 3206.058 kb on - strand, within ECD_03057at 3206.058 kb on - strand, within ECD_03057at 3206.058 kb on - strand, within ECD_03057at 3206.078 kb on + strand, within ECD_03057at 3206.078 kb on + strand, within ECD_03057at 3206.079 kb on - strand, within ECD_03057at 3206.115 kb on - strand, within ECD_03057at 3206.115 kb on - strand, within ECD_03057at 3206.115 kb on - strand, within ECD_03057at 3206.147 kb on + strand, within ECD_03057at 3206.148 kb on - strand, within ECD_03057at 3206.148 kb on - strand, within ECD_03057at 3206.189 kb on - strand, within ECD_03057at 3206.189 kb on - strand, within ECD_03057at 3206.189 kb on - strand, within ECD_03057at 3206.192 kb on + strand, within ECD_03057at 3206.192 kb on + strand, within ECD_03057at 3206.193 kb on - strand, within ECD_03057at 3206.193 kb on - strand, within ECD_03057at 3206.221 kb on - strand, within ECD_03057at 3206.228 kb on + strand, within ECD_03057at 3206.229 kb on - strand, within ECD_03057

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,205,096 - ECD_03055 0.18 +1.1
3,205,136 - ECD_03055 0.34 +1.0
3,205,138 - ECD_03055 0.35 -1.6
3,205,138 - ECD_03055 0.35 +0.3
3,205,138 - ECD_03055 0.35 +0.5
3,205,138 - ECD_03055 0.35 -0.5
3,205,138 - ECD_03055 0.35 +0.8
3,205,138 - ECD_03055 0.35 +3.1
3,205,327 - -1.1
3,205,345 - -0.5
3,205,366 - -0.9
3,205,370 - -0.5
3,205,512 + ECD_03056 0.17 +2.1
3,205,512 + ECD_03056 0.17 -0.8
3,205,512 + ECD_03056 0.17 -0.3
3,205,513 - ECD_03056 0.17 +0.4
3,205,513 - ECD_03056 0.17 +0.0
3,205,574 - ECD_03056 0.38 -1.0
3,205,640 - ECD_03056 0.60 -0.5
3,205,833 + ECD_03057 0.12 -0.9
3,205,901 + ECD_03057 0.23 -0.5
3,205,901 + ECD_03057 0.23 +0.5
3,205,902 - ECD_03057 0.23 +1.1
3,206,043 - ECD_03057 0.45 -0.2
3,206,043 - ECD_03057 0.45 +0.7
3,206,043 - ECD_03057 0.45 +0.1
3,206,057 + ECD_03057 0.47 +0.9
3,206,057 + ECD_03057 0.47 +1.1
3,206,058 - ECD_03057 0.47 -0.8
3,206,058 - ECD_03057 0.47 +0.5
3,206,058 - ECD_03057 0.47 +0.3
3,206,058 - ECD_03057 0.47 -0.8
3,206,058 - ECD_03057 0.47 -0.5
3,206,078 + ECD_03057 0.51 +2.7
3,206,078 + ECD_03057 0.51 -0.1
3,206,079 - ECD_03057 0.51 +0.5
3,206,115 - ECD_03057 0.56 -1.4
3,206,115 - ECD_03057 0.56 +0.0
3,206,115 - ECD_03057 0.56 -0.2
3,206,147 + ECD_03057 0.61 +0.6
3,206,148 - ECD_03057 0.62 +0.5
3,206,148 - ECD_03057 0.62 -0.5
3,206,189 - ECD_03057 0.68 +0.8
3,206,189 - ECD_03057 0.68 +0.1
3,206,189 - ECD_03057 0.68 -0.5
3,206,192 + ECD_03057 0.69 +0.1
3,206,192 + ECD_03057 0.69 +0.3
3,206,193 - ECD_03057 0.69 -0.2
3,206,193 - ECD_03057 0.69 -1.4
3,206,221 - ECD_03057 0.73 -0.8
3,206,228 + ECD_03057 0.74 +0.2
3,206,229 - ECD_03057 0.74 +0.0

Or see this region's nucleotide sequence