Strain Fitness in Escherichia coli BL21 around ECD_03036

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03035 and ECD_03036 are separated by 24 nucleotidesECD_03036 and ECD_03037 are separated by 27 nucleotidesECD_03037 and ECD_t00057 are separated by 206 nucleotides ECD_03035: ECD_03035 - translation initiation factor IF-2, at 3,181,841 to 3,184,513 _03035 ECD_03036: ECD_03036 - transcription termination/antitermination L factor, at 3,184,538 to 3,186,025 _03036 ECD_03037: ECD_03037 - ribosome maturation factor for 30S subunits, at 3,186,053 to 3,186,505 _03037 ECD_t00057: ECD_t00057 - tRNA-Met, at 3,186,712 to 3,186,788 _t00057 Position (kb) 3184 3185 3186 3187Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3184.530 kb on - strandat 3184.530 kb on - strandat 3184.530 kb on - strandat 3184.537 kb on - strandat 3184.537 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.664 kb on - strandat 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.870 kb on - strand, within ECD_03036at 3184.942 kb on - strand, within ECD_03036at 3186.125 kb on - strand, within ECD_03037at 3186.290 kb on - strand, within ECD_03037at 3186.292 kb on - strand, within ECD_03037at 3186.292 kb on - strand, within ECD_03037at 3186.292 kb on - strand, within ECD_03037at 3186.333 kb on - strand, within ECD_03037at 3186.333 kb on - strand, within ECD_03037at 3186.333 kb on - strand, within ECD_03037at 3186.391 kb on - strand, within ECD_03037at 3186.391 kb on - strand, within ECD_03037at 3186.391 kb on - strand, within ECD_03037at 3186.470 kb on - strandat 3186.470 kb on - strandat 3186.523 kb on - strandat 3186.547 kb on - strandat 3186.591 kb on - strandat 3186.661 kb on - strandat 3186.684 kb on - strandat 3186.809 kb on - strandat 3186.853 kb on - strandat 3186.883 kb on + strandat 3186.883 kb on + strandat 3186.883 kb on + strandat 3186.885 kb on + strandat 3186.886 kb on - strandat 3186.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,184,530 - -0.1
3,184,530 - -1.2
3,184,530 - -0.5
3,184,537 - -0.1
3,184,537 - -0.7
3,184,664 - -0.5
3,184,664 - -1.0
3,184,664 - +0.3
3,184,664 - -0.9
3,184,664 - +0.7
3,184,870 - ECD_03036 0.22 -0.4
3,184,870 - ECD_03036 0.22 +0.1
3,184,870 - ECD_03036 0.22 +0.1
3,184,870 - ECD_03036 0.22 -2.4
3,184,870 - ECD_03036 0.22 -1.0
3,184,870 - ECD_03036 0.22 -1.3
3,184,942 - ECD_03036 0.27 -2.2
3,186,125 - ECD_03037 0.16 +1.8
3,186,290 - ECD_03037 0.52 +2.5
3,186,292 - ECD_03037 0.53 +2.9
3,186,292 - ECD_03037 0.53 +1.1
3,186,292 - ECD_03037 0.53 +0.6
3,186,333 - ECD_03037 0.62 +0.3
3,186,333 - ECD_03037 0.62 +2.7
3,186,333 - ECD_03037 0.62 +1.8
3,186,391 - ECD_03037 0.75 +0.6
3,186,391 - ECD_03037 0.75 +0.6
3,186,391 - ECD_03037 0.75 +0.6
3,186,470 - +1.1
3,186,470 - +1.4
3,186,523 - +0.4
3,186,547 - +0.5
3,186,591 - -2.1
3,186,661 - -0.3
3,186,684 - -0.4
3,186,809 - +0.2
3,186,853 - -1.4
3,186,883 + +1.7
3,186,883 + -1.3
3,186,883 + -1.2
3,186,885 + +0.6
3,186,886 - -0.6
3,186,964 - -0.5

Or see this region's nucleotide sequence