Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03033 and ECD_03034 overlap by 1 nucleotides ECD_03034 and ECD_03035 are separated by 163 nucleotides ECD_03035 and ECD_03036 are separated by 24 nucleotides
ECD_03033: ECD_03033 - tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase, at 3,180,332 to 3,181,276
_03033
ECD_03034: ECD_03034 - 30s ribosome binding factor, at 3,181,276 to 3,181,677
_03034
ECD_03035: ECD_03035 - translation initiation factor IF-2, at 3,181,841 to 3,184,513
_03035
ECD_03036: ECD_03036 - transcription termination/antitermination L factor, at 3,184,538 to 3,186,025
_03036
Position (kb)
3181
3182
3183
3184
3185 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3180.886 kb on - strand, within ECD_03033 at 3180.901 kb on - strand, within ECD_03033 at 3181.168 kb on + strand, within ECD_03033 at 3181.169 kb on - strand, within ECD_03033 at 3181.169 kb on - strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.170 kb on + strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.171 kb on - strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.172 kb on + strand, within ECD_03033 at 3181.173 kb on - strand, within ECD_03033 at 3181.173 kb on - strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.174 kb on + strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.175 kb on - strand, within ECD_03033 at 3181.210 kb on + strand at 3181.211 kb on - strand at 3181.278 kb on - strand at 3181.278 kb on - strand at 3181.278 kb on - strand at 3181.762 kb on - strand at 3181.853 kb on - strand at 3181.853 kb on - strand at 3181.853 kb on - strand at 3181.853 kb on - strand at 3184.530 kb on - strand at 3184.530 kb on - strand at 3184.530 kb on - strand at 3184.537 kb on - strand at 3184.537 kb on - strand at 3184.664 kb on - strand at 3184.664 kb on - strand at 3184.664 kb on - strand at 3184.664 kb on - strand at 3184.664 kb on - strand at 3184.870 kb on - strand, within ECD_03036 at 3184.870 kb on - strand, within ECD_03036 at 3184.870 kb on - strand, within ECD_03036 at 3184.870 kb on - strand, within ECD_03036 at 3184.870 kb on - strand, within ECD_03036 at 3184.870 kb on - strand, within ECD_03036 at 3184.942 kb on - strand, within ECD_03036
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,180,886 - ECD_03033 0.59 +0.2 3,180,901 - ECD_03033 0.60 -2.1 3,181,168 + ECD_03033 0.88 -2.0 3,181,169 - ECD_03033 0.89 +1.0 3,181,169 - ECD_03033 0.89 -2.4 3,181,170 + ECD_03033 0.89 +0.8 3,181,170 + ECD_03033 0.89 -0.9 3,181,170 + ECD_03033 0.89 +0.0 3,181,170 + ECD_03033 0.89 +0.8 3,181,170 + ECD_03033 0.89 -1.4 3,181,170 + ECD_03033 0.89 -0.0 3,181,170 + ECD_03033 0.89 -0.0 3,181,170 + ECD_03033 0.89 +0.4 3,181,171 - ECD_03033 0.89 -1.5 3,181,171 - ECD_03033 0.89 +2.7 3,181,171 - ECD_03033 0.89 +0.1 3,181,171 - ECD_03033 0.89 -0.2 3,181,171 - ECD_03033 0.89 -1.0 3,181,171 - ECD_03033 0.89 -0.4 3,181,171 - ECD_03033 0.89 -0.4 3,181,171 - ECD_03033 0.89 -0.9 3,181,172 + ECD_03033 0.89 +0.3 3,181,172 + ECD_03033 0.89 +0.6 3,181,172 + ECD_03033 0.89 -1.4 3,181,172 + ECD_03033 0.89 +0.3 3,181,172 + ECD_03033 0.89 +1.0 3,181,172 + ECD_03033 0.89 +1.6 3,181,172 + ECD_03033 0.89 +0.4 3,181,173 - ECD_03033 0.89 -1.7 3,181,173 - ECD_03033 0.89 -0.1 3,181,174 + ECD_03033 0.89 -1.4 3,181,174 + ECD_03033 0.89 -0.9 3,181,174 + ECD_03033 0.89 -0.2 3,181,174 + ECD_03033 0.89 -0.7 3,181,175 - ECD_03033 0.89 -1.0 3,181,175 - ECD_03033 0.89 -0.4 3,181,175 - ECD_03033 0.89 -0.2 3,181,175 - ECD_03033 0.89 +3.1 3,181,175 - ECD_03033 0.89 +0.4 3,181,175 - ECD_03033 0.89 +1.7 3,181,210 + -0.4 3,181,211 - -0.8 3,181,278 - +0.2 3,181,278 - +0.9 3,181,278 - -0.1 3,181,762 - -0.6 3,181,853 - +1.0 3,181,853 - -0.2 3,181,853 - +2.3 3,181,853 - +0.1 3,184,530 - -0.1 3,184,530 - -1.2 3,184,530 - -0.5 3,184,537 - -0.1 3,184,537 - -0.7 3,184,664 - -0.5 3,184,664 - -1.0 3,184,664 - +0.3 3,184,664 - -0.9 3,184,664 - +0.7 3,184,870 - ECD_03036 0.22 -0.4 3,184,870 - ECD_03036 0.22 +0.1 3,184,870 - ECD_03036 0.22 +0.1 3,184,870 - ECD_03036 0.22 -2.4 3,184,870 - ECD_03036 0.22 -1.0 3,184,870 - ECD_03036 0.22 -1.3 3,184,942 - ECD_03036 0.27 -2.2
Or see this region's nucleotide sequence