Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02984 and ECD_02985 are separated by 98 nucleotides ECD_02985 and ECD_02986 are separated by 314 nucleotides ECD_02986 and ECD_02987 are separated by 255 nucleotides
ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327
_02984
ECD_02985: ECD_02985 - tdc operon transcriptional activator, at 3,132,426 to 3,133,364
_02985
ECD_02986: ECD_02986 - L-threonine dehydratase operon activator protein, at 3,133,679 to 3,133,897
_02986
ECD_02987: ECD_02987 - uncharacterized protein, at 3,134,153 to 3,134,692
_02987
Position (kb)
3132
3133
3134 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3131.509 kb on + strand, within ECD_02984 at 3131.654 kb on - strand, within ECD_02984 at 3131.808 kb on - strand, within ECD_02984 at 3132.139 kb on - strand, within ECD_02984 at 3132.588 kb on - strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.731 kb on + strand, within ECD_02985 at 3132.745 kb on + strand, within ECD_02985 at 3132.748 kb on + strand, within ECD_02985 at 3132.758 kb on + strand, within ECD_02985 at 3132.876 kb on + strand, within ECD_02985 at 3132.904 kb on - strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.974 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3133.032 kb on - strand, within ECD_02985 at 3133.095 kb on - strand, within ECD_02985 at 3133.177 kb on - strand, within ECD_02985 at 3134.110 kb on + strand at 3134.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,131,509 + ECD_02984 0.17 -1.9 3,131,654 - ECD_02984 0.32 +0.8 3,131,808 - ECD_02984 0.47 +0.2 3,132,139 - ECD_02984 0.81 -0.0 3,132,588 - ECD_02985 0.17 +0.9 3,132,728 + ECD_02985 0.32 +0.9 3,132,728 + ECD_02985 0.32 +1.7 3,132,731 + ECD_02985 0.32 +0.6 3,132,745 + ECD_02985 0.34 +0.5 3,132,748 + ECD_02985 0.34 +0.7 3,132,758 + ECD_02985 0.35 +0.1 3,132,876 + ECD_02985 0.48 +0.8 3,132,904 - ECD_02985 0.51 +0.4 3,132,973 + ECD_02985 0.58 +0.3 3,132,973 + ECD_02985 0.58 +2.1 3,132,974 - ECD_02985 0.58 +1.5 3,132,978 - ECD_02985 0.59 +0.3 3,132,978 - ECD_02985 0.59 +0.3 3,132,978 - ECD_02985 0.59 +0.0 3,133,032 - ECD_02985 0.65 +0.6 3,133,095 - ECD_02985 0.71 -0.7 3,133,177 - ECD_02985 0.80 -1.6 3,134,110 + -0.2 3,134,121 + +1.1
Or see this region's nucleotide sequence