Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02904 and ECD_02905 are separated by 24 nucleotides ECD_02905 and ECD_02906 are separated by 0 nucleotides ECD_02906 and ECD_02907 are separated by 204 nucleotides
ECD_02904: ECD_02904 - 3',5' cAMP phosphodiesterase, at 3,043,443 to 3,044,270
_02904
ECD_02905: ECD_02905 - DUF1249 protein YqiB, at 3,044,295 to 3,044,717
_02905
ECD_02906: ECD_02906 - ADP-ribose pyrophosphatase, at 3,044,718 to 3,045,347
_02906
ECD_02907: ECD_02907 - transport channel, at 3,045,552 to 3,047,033
_02907
Position (kb)
3044
3045
3046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3043.754 kb on + strand, within ECD_02904 at 3043.755 kb on - strand, within ECD_02904 at 3043.755 kb on - strand, within ECD_02904 at 3043.796 kb on + strand, within ECD_02904 at 3043.797 kb on - strand, within ECD_02904 at 3043.797 kb on - strand, within ECD_02904 at 3043.797 kb on - strand, within ECD_02904 at 3043.919 kb on + strand, within ECD_02904 at 3044.051 kb on - strand, within ECD_02904 at 3044.077 kb on - strand, within ECD_02904 at 3044.163 kb on + strand, within ECD_02904 at 3044.211 kb on - strand at 3044.281 kb on + strand at 3044.282 kb on - strand at 3044.282 kb on - strand at 3044.300 kb on - strand at 3044.300 kb on - strand at 3044.329 kb on - strand at 3044.407 kb on + strand, within ECD_02905 at 3044.476 kb on + strand, within ECD_02905 at 3044.476 kb on + strand, within ECD_02905 at 3044.476 kb on + strand, within ECD_02905 at 3044.477 kb on - strand, within ECD_02905 at 3044.477 kb on - strand, within ECD_02905 at 3044.477 kb on - strand, within ECD_02905 at 3044.477 kb on - strand, within ECD_02905 at 3044.535 kb on + strand, within ECD_02905 at 3044.535 kb on + strand, within ECD_02905 at 3044.536 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.610 kb on + strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.707 kb on + strand at 3044.719 kb on + strand at 3044.719 kb on + strand at 3044.720 kb on - strand at 3044.808 kb on + strand, within ECD_02906 at 3044.809 kb on - strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.853 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.964 kb on + strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3045.100 kb on + strand, within ECD_02906 at 3045.229 kb on - strand, within ECD_02906 at 3045.229 kb on - strand, within ECD_02906 at 3045.246 kb on - strand, within ECD_02906 at 3045.320 kb on + strand at 3045.342 kb on - strand at 3045.351 kb on + strand at 3045.351 kb on + strand at 3045.365 kb on + strand at 3045.365 kb on + strand at 3045.369 kb on - strand at 3045.369 kb on - strand at 3045.376 kb on + strand at 3045.425 kb on + strand at 3045.448 kb on + strand at 3045.501 kb on + strand at 3045.502 kb on - strand at 3045.653 kb on + strand at 3045.672 kb on - strand at 3045.710 kb on + strand, within ECD_02907 at 3045.748 kb on + strand, within ECD_02907 at 3045.765 kb on + strand, within ECD_02907 at 3045.765 kb on + strand, within ECD_02907 at 3045.765 kb on + strand, within ECD_02907 at 3045.829 kb on + strand, within ECD_02907 at 3046.027 kb on + strand, within ECD_02907 at 3046.027 kb on + strand, within ECD_02907 at 3046.098 kb on + strand, within ECD_02907 at 3046.133 kb on + strand, within ECD_02907 at 3046.133 kb on + strand, within ECD_02907 at 3046.133 kb on + strand, within ECD_02907 at 3046.182 kb on + strand, within ECD_02907 at 3046.182 kb on + strand, within ECD_02907 at 3046.288 kb on + strand, within ECD_02907
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 3,043,754 + ECD_02904 0.38 -2.3 3,043,755 - ECD_02904 0.38 -0.2 3,043,755 - ECD_02904 0.38 -1.7 3,043,796 + ECD_02904 0.43 +0.2 3,043,797 - ECD_02904 0.43 +0.8 3,043,797 - ECD_02904 0.43 +0.4 3,043,797 - ECD_02904 0.43 +0.8 3,043,919 + ECD_02904 0.57 -1.0 3,044,051 - ECD_02904 0.73 -1.5 3,044,077 - ECD_02904 0.77 -1.6 3,044,163 + ECD_02904 0.87 -1.6 3,044,211 - -1.8 3,044,281 + -1.9 3,044,282 - -2.5 3,044,282 - -0.3 3,044,300 - -0.5 3,044,300 - +0.3 3,044,329 - -0.4 3,044,407 + ECD_02905 0.26 -0.6 3,044,476 + ECD_02905 0.43 -0.8 3,044,476 + ECD_02905 0.43 +0.5 3,044,476 + ECD_02905 0.43 -0.4 3,044,477 - ECD_02905 0.43 +0.8 3,044,477 - ECD_02905 0.43 -0.5 3,044,477 - ECD_02905 0.43 -0.3 3,044,477 - ECD_02905 0.43 +0.2 3,044,535 + ECD_02905 0.57 -1.2 3,044,535 + ECD_02905 0.57 -0.2 3,044,536 - ECD_02905 0.57 -1.1 3,044,606 - ECD_02905 0.74 +0.4 3,044,606 - ECD_02905 0.74 +0.3 3,044,606 - ECD_02905 0.74 +0.2 3,044,606 - ECD_02905 0.74 +1.4 3,044,610 + ECD_02905 0.74 -0.6 3,044,611 - ECD_02905 0.75 +0.6 3,044,611 - ECD_02905 0.75 -1.0 3,044,611 - ECD_02905 0.75 -0.7 3,044,611 - ECD_02905 0.75 +0.5 3,044,707 + -1.4 3,044,719 + +0.9 3,044,719 + -0.2 3,044,720 - +0.1 3,044,808 + ECD_02906 0.14 +0.1 3,044,809 - ECD_02906 0.14 +0.9 3,044,818 + ECD_02906 0.16 +0.1 3,044,818 + ECD_02906 0.16 +0.1 3,044,818 + ECD_02906 0.16 +0.3 3,044,818 + ECD_02906 0.16 +0.2 3,044,819 - ECD_02906 0.16 +0.9 3,044,819 - ECD_02906 0.16 +0.0 3,044,819 - ECD_02906 0.16 -1.8 3,044,819 - ECD_02906 0.16 +0.9 3,044,853 - ECD_02906 0.21 +0.4 3,044,919 - ECD_02906 0.32 -1.6 3,044,919 - ECD_02906 0.32 +0.7 3,044,919 - ECD_02906 0.32 +0.8 3,044,919 - ECD_02906 0.32 +0.1 3,044,919 - ECD_02906 0.32 -0.7 3,044,964 + ECD_02906 0.39 -0.2 3,044,965 - ECD_02906 0.39 -1.2 3,044,965 - ECD_02906 0.39 +1.0 3,044,965 - ECD_02906 0.39 +1.5 3,044,965 - ECD_02906 0.39 +0.2 3,045,100 + ECD_02906 0.61 +0.5 3,045,229 - ECD_02906 0.81 +0.3 3,045,229 - ECD_02906 0.81 +0.5 3,045,246 - ECD_02906 0.84 -0.2 3,045,320 + +0.5 3,045,342 - +0.8 3,045,351 + +0.6 3,045,351 + -1.2 3,045,365 + -0.3 3,045,365 + +0.2 3,045,369 - +0.2 3,045,369 - -1.0 3,045,376 + -2.6 3,045,425 + -0.3 3,045,448 + -1.5 3,045,501 + +0.1 3,045,502 - +0.7 3,045,653 + +0.8 3,045,672 - +1.8 3,045,710 + ECD_02907 0.11 +2.0 3,045,748 + ECD_02907 0.13 +0.7 3,045,765 + ECD_02907 0.14 +1.1 3,045,765 + ECD_02907 0.14 +2.1 3,045,765 + ECD_02907 0.14 -1.0 3,045,829 + ECD_02907 0.19 +0.5 3,046,027 + ECD_02907 0.32 +2.6 3,046,027 + ECD_02907 0.32 +0.5 3,046,098 + ECD_02907 0.37 -0.0 3,046,133 + ECD_02907 0.39 -1.0 3,046,133 + ECD_02907 0.39 +0.1 3,046,133 + ECD_02907 0.39 +0.5 3,046,182 + ECD_02907 0.43 -0.2 3,046,182 + ECD_02907 0.43 +0.8 3,046,288 + ECD_02907 0.50 +1.1
Or see this region's nucleotide sequence