Strain Fitness in Escherichia coli BL21 around ECD_02899

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02898 and ECD_02899 are separated by 45 nucleotidesECD_02899 and ECD_02900 are separated by 318 nucleotidesECD_02900 and ECD_02901 are separated by 30 nucleotides ECD_02898: ECD_02898 - quorum sensing sensory histidine kinase in two-component regulatory system with QseB, at 3,037,921 to 3,039,270 _02898 ECD_02899: ECD_02899 - inner membrane protein, at 3,039,316 to 3,039,648 _02899 ECD_02900: ECD_02900 - NADPH quinone reductase, at 3,039,967 to 3,040,548 _02900 ECD_02901: ECD_02901 - quinol monooxygenase, at 3,040,579 to 3,040,893 _02901 Position (kb) 3039 3040Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3038.371 kb on + strand, within ECD_02898at 3038.371 kb on + strand, within ECD_02898at 3038.444 kb on + strand, within ECD_02898at 3038.459 kb on + strand, within ECD_02898at 3038.459 kb on + strand, within ECD_02898at 3038.462 kb on + strand, within ECD_02898at 3038.507 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.512 kb on - strand, within ECD_02898at 3038.641 kb on - strand, within ECD_02898at 3038.756 kb on + strand, within ECD_02898at 3038.756 kb on + strand, within ECD_02898at 3038.756 kb on + strand, within ECD_02898at 3038.889 kb on + strand, within ECD_02898at 3038.893 kb on + strand, within ECD_02898at 3038.978 kb on + strand, within ECD_02898at 3039.133 kb on + strand, within ECD_02898at 3039.133 kb on + strand, within ECD_02898at 3039.282 kb on - strandat 3039.392 kb on - strand, within ECD_02899at 3039.929 kb on + strandat 3039.929 kb on + strandat 3039.930 kb on - strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.932 kb on + strandat 3039.933 kb on - strandat 3039.934 kb on + strandat 3040.220 kb on + strand, within ECD_02900at 3040.220 kb on + strand, within ECD_02900at 3040.221 kb on - strand, within ECD_02900at 3040.246 kb on + strand, within ECD_02900at 3040.323 kb on + strand, within ECD_02900at 3040.323 kb on + strand, within ECD_02900at 3040.409 kb on - strand, within ECD_02900at 3040.409 kb on - strand, within ECD_02900at 3040.464 kb on + strand, within ECD_02900at 3040.465 kb on - strand, within ECD_02900at 3040.506 kb on + strandat 3040.506 kb on + strandat 3040.507 kb on - strandat 3040.546 kb on + strandat 3040.550 kb on + strandat 3040.550 kb on + strandat 3040.550 kb on + strandat 3040.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,038,371 + ECD_02898 0.33 +3.5
3,038,371 + ECD_02898 0.33 +1.0
3,038,444 + ECD_02898 0.39 +2.9
3,038,459 + ECD_02898 0.40 +0.9
3,038,459 + ECD_02898 0.40 +1.6
3,038,462 + ECD_02898 0.40 +1.1
3,038,507 + ECD_02898 0.43 +1.4
3,038,511 + ECD_02898 0.44 +2.6
3,038,511 + ECD_02898 0.44 +2.8
3,038,511 + ECD_02898 0.44 +0.6
3,038,511 + ECD_02898 0.44 +1.9
3,038,511 + ECD_02898 0.44 +3.7
3,038,511 + ECD_02898 0.44 +1.7
3,038,511 + ECD_02898 0.44 +2.0
3,038,511 + ECD_02898 0.44 +1.9
3,038,511 + ECD_02898 0.44 +1.7
3,038,512 - ECD_02898 0.44 +1.4
3,038,641 - ECD_02898 0.53 +1.9
3,038,756 + ECD_02898 0.62 +2.7
3,038,756 + ECD_02898 0.62 +0.8
3,038,756 + ECD_02898 0.62 +1.4
3,038,889 + ECD_02898 0.72 -0.4
3,038,893 + ECD_02898 0.72 +1.6
3,038,978 + ECD_02898 0.78 +2.3
3,039,133 + ECD_02898 0.90 +1.5
3,039,133 + ECD_02898 0.90 +2.1
3,039,282 - +2.5
3,039,392 - ECD_02899 0.23 -0.9
3,039,929 + +0.1
3,039,929 + +0.1
3,039,930 - -0.2
3,039,932 + -1.7
3,039,932 + +0.1
3,039,932 + -2.9
3,039,932 + +0.0
3,039,932 + -0.9
3,039,933 - -0.5
3,039,934 + -0.5
3,040,220 + ECD_02900 0.43 -0.1
3,040,220 + ECD_02900 0.43 -0.3
3,040,221 - ECD_02900 0.44 +0.8
3,040,246 + ECD_02900 0.48 +0.5
3,040,323 + ECD_02900 0.61 -0.0
3,040,323 + ECD_02900 0.61 -0.6
3,040,409 - ECD_02900 0.76 +0.9
3,040,409 - ECD_02900 0.76 +0.0
3,040,464 + ECD_02900 0.85 -0.6
3,040,465 - ECD_02900 0.86 +0.8
3,040,506 + +0.6
3,040,506 + +0.2
3,040,507 - +0.2
3,040,546 + -0.4
3,040,550 + -0.1
3,040,550 + +1.7
3,040,550 + +1.8
3,040,564 + +0.8

Or see this region's nucleotide sequence