Strain Fitness in Escherichia coli BL21 around ECD_02883

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02881 and ECD_02882 are separated by 139 nucleotidesECD_02882 and ECD_02883 are separated by 39 nucleotidesECD_02883 and ECD_02884 are separated by 136 nucleotides ECD_02881: ECD_02881 - cystathionine beta-lyase, PLP-dependent, at 3,019,673 to 3,020,860 _02881 ECD_02882: ECD_02882 - general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter, at 3,021,000 to 3,021,659 _02882 ECD_02883: ECD_02883 - transcriptional activator of yqhD, at 3,021,699 to 3,022,655 _02883 ECD_02884: ECD_02884 - aldehyde reductase, NADPH-dependent, at 3,022,792 to 3,023,955 _02884 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3020.734 kb on + strand, within ECD_02881at 3020.794 kb on + strandat 3020.794 kb on + strandat 3020.795 kb on - strandat 3020.856 kb on + strandat 3020.857 kb on - strandat 3020.857 kb on - strandat 3020.893 kb on + strandat 3020.894 kb on - strandat 3020.909 kb on + strandat 3020.954 kb on + strandat 3020.954 kb on + strandat 3020.954 kb on + strandat 3020.955 kb on - strandat 3020.955 kb on - strandat 3020.959 kb on + strandat 3020.959 kb on + strandat 3020.960 kb on - strandat 3020.968 kb on - strandat 3020.968 kb on - strandat 3020.968 kb on - strandat 3020.975 kb on + strandat 3020.976 kb on - strandat 3021.008 kb on + strandat 3021.008 kb on + strandat 3021.017 kb on + strandat 3021.018 kb on - strandat 3021.018 kb on - strandat 3021.069 kb on - strand, within ECD_02882at 3021.075 kb on - strand, within ECD_02882at 3021.084 kb on + strand, within ECD_02882at 3021.084 kb on + strand, within ECD_02882at 3021.084 kb on + strand, within ECD_02882at 3021.164 kb on - strand, within ECD_02882at 3021.209 kb on + strand, within ECD_02882at 3021.258 kb on + strand, within ECD_02882at 3021.258 kb on + strand, within ECD_02882at 3021.258 kb on + strand, within ECD_02882at 3021.259 kb on - strand, within ECD_02882at 3021.259 kb on - strand, within ECD_02882at 3021.261 kb on - strand, within ECD_02882at 3021.261 kb on - strand, within ECD_02882at 3021.284 kb on + strand, within ECD_02882at 3021.323 kb on + strand, within ECD_02882at 3021.324 kb on - strand, within ECD_02882at 3021.327 kb on + strand, within ECD_02882at 3021.328 kb on - strand, within ECD_02882at 3021.328 kb on - strand, within ECD_02882at 3021.407 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.524 kb on - strand, within ECD_02882at 3021.527 kb on + strand, within ECD_02882at 3021.528 kb on - strand, within ECD_02882at 3021.528 kb on - strand, within ECD_02882at 3021.636 kb on - strandat 3021.645 kb on + strandat 3021.697 kb on - strandat 3021.697 kb on - strandat 3021.700 kb on + strandat 3021.701 kb on - strandat 3021.758 kb on - strandat 3021.758 kb on - strandat 3021.758 kb on - strandat 3021.764 kb on + strandat 3021.860 kb on + strand, within ECD_02883at 3021.871 kb on + strand, within ECD_02883at 3021.872 kb on - strand, within ECD_02883at 3021.884 kb on - strand, within ECD_02883at 3021.914 kb on + strand, within ECD_02883at 3021.915 kb on - strand, within ECD_02883at 3021.989 kb on - strand, within ECD_02883at 3021.989 kb on - strand, within ECD_02883at 3021.992 kb on + strand, within ECD_02883at 3021.993 kb on - strand, within ECD_02883at 3022.090 kb on + strand, within ECD_02883at 3022.090 kb on + strand, within ECD_02883at 3022.090 kb on + strand, within ECD_02883at 3022.091 kb on - strand, within ECD_02883at 3022.091 kb on - strand, within ECD_02883at 3022.091 kb on - strand, within ECD_02883at 3022.093 kb on + strand, within ECD_02883at 3022.128 kb on - strand, within ECD_02883at 3022.179 kb on + strand, within ECD_02883at 3022.276 kb on - strand, within ECD_02883at 3022.287 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.390 kb on + strand, within ECD_02883at 3022.444 kb on - strand, within ECD_02883at 3022.766 kb on + strandat 3022.766 kb on + strandat 3022.767 kb on - strandat 3022.887 kb on - strandat 3022.887 kb on - strandat 3022.897 kb on + strandat 3022.898 kb on - strandat 3022.983 kb on + strand, within ECD_02884at 3023.119 kb on + strand, within ECD_02884at 3023.173 kb on - strand, within ECD_02884at 3023.254 kb on - strand, within ECD_02884at 3023.326 kb on + strand, within ECD_02884at 3023.326 kb on + strand, within ECD_02884at 3023.327 kb on - strand, within ECD_02884at 3023.328 kb on + strand, within ECD_02884at 3023.328 kb on + strand, within ECD_02884at 3023.329 kb on - strand, within ECD_02884at 3023.332 kb on + strand, within ECD_02884at 3023.332 kb on + strand, within ECD_02884at 3023.333 kb on - strand, within ECD_02884at 3023.333 kb on - strand, within ECD_02884at 3023.381 kb on + strand, within ECD_02884at 3023.382 kb on - strand, within ECD_02884at 3023.398 kb on + strand, within ECD_02884at 3023.398 kb on + strand, within ECD_02884at 3023.398 kb on + strand, within ECD_02884at 3023.398 kb on + strand, within ECD_02884at 3023.399 kb on - strand, within ECD_02884at 3023.404 kb on - strand, within ECD_02884at 3023.404 kb on - strand, within ECD_02884at 3023.462 kb on + strand, within ECD_02884at 3023.503 kb on + strand, within ECD_02884at 3023.504 kb on - strand, within ECD_02884at 3023.592 kb on + strand, within ECD_02884at 3023.592 kb on + strand, within ECD_02884

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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3,020,734 + ECD_02881 0.89 +1.8
3,020,794 + +0.5
3,020,794 + -1.1
3,020,795 - -0.4
3,020,856 + -0.1
3,020,857 - +0.6
3,020,857 - +0.2
3,020,893 + -1.0
3,020,894 - -0.5
3,020,909 + -0.4
3,020,954 + +0.2
3,020,954 + +0.2
3,020,954 + -0.5
3,020,955 - +0.2
3,020,955 - -1.8
3,020,959 + +0.2
3,020,959 + -0.3
3,020,960 - -0.9
3,020,968 - -2.2
3,020,968 - +1.9
3,020,968 - -0.5
3,020,975 + -1.9
3,020,976 - -2.6
3,021,008 + +1.2
3,021,008 + -2.3
3,021,017 + -1.7
3,021,018 - +0.0
3,021,018 - -0.9
3,021,069 - ECD_02882 0.10 +0.8
3,021,075 - ECD_02882 0.11 -1.3
3,021,084 + ECD_02882 0.13 -1.0
3,021,084 + ECD_02882 0.13 -0.3
3,021,084 + ECD_02882 0.13 +0.4
3,021,164 - ECD_02882 0.25 -0.2
3,021,209 + ECD_02882 0.32 -3.0
3,021,258 + ECD_02882 0.39 -1.7
3,021,258 + ECD_02882 0.39 -2.5
3,021,258 + ECD_02882 0.39 -1.3
3,021,259 - ECD_02882 0.39 -1.2
3,021,259 - ECD_02882 0.39 -0.4
3,021,261 - ECD_02882 0.40 -1.8
3,021,261 - ECD_02882 0.40 -0.4
3,021,284 + ECD_02882 0.43 -2.4
3,021,323 + ECD_02882 0.49 -0.4
3,021,324 - ECD_02882 0.49 -0.3
3,021,327 + ECD_02882 0.50 -1.2
3,021,328 - ECD_02882 0.50 -1.2
3,021,328 - ECD_02882 0.50 -0.5
3,021,407 + ECD_02882 0.62 -3.2
3,021,523 + ECD_02882 0.79 -0.5
3,021,523 + ECD_02882 0.79 +0.9
3,021,523 + ECD_02882 0.79 -1.5
3,021,523 + ECD_02882 0.79 -0.2
3,021,523 + ECD_02882 0.79 +0.3
3,021,524 - ECD_02882 0.79 +0.5
3,021,527 + ECD_02882 0.80 -0.4
3,021,528 - ECD_02882 0.80 -1.4
3,021,528 - ECD_02882 0.80 -1.2
3,021,636 - -0.4
3,021,645 + -1.8
3,021,697 - -0.6
3,021,697 - +1.1
3,021,700 + -0.8
3,021,701 - -0.8
3,021,758 - -0.3
3,021,758 - -0.8
3,021,758 - -0.1
3,021,764 + -1.8
3,021,860 + ECD_02883 0.17 +0.9
3,021,871 + ECD_02883 0.18 -0.1
3,021,872 - ECD_02883 0.18 -0.2
3,021,884 - ECD_02883 0.19 -0.5
3,021,914 + ECD_02883 0.22 -1.0
3,021,915 - ECD_02883 0.23 -0.0
3,021,989 - ECD_02883 0.30 -1.9
3,021,989 - ECD_02883 0.30 -1.5
3,021,992 + ECD_02883 0.31 -0.6
3,021,993 - ECD_02883 0.31 +0.9
3,022,090 + ECD_02883 0.41 +0.1
3,022,090 + ECD_02883 0.41 -1.4
3,022,090 + ECD_02883 0.41 -1.2
3,022,091 - ECD_02883 0.41 -0.8
3,022,091 - ECD_02883 0.41 +0.6
3,022,091 - ECD_02883 0.41 -0.4
3,022,093 + ECD_02883 0.41 -0.6
3,022,128 - ECD_02883 0.45 -2.0
3,022,179 + ECD_02883 0.50 -0.4
3,022,276 - ECD_02883 0.60 -2.3
3,022,287 - ECD_02883 0.61 -0.1
3,022,376 - ECD_02883 0.71 +1.6
3,022,376 - ECD_02883 0.71 +0.3
3,022,376 - ECD_02883 0.71 +1.2
3,022,376 - ECD_02883 0.71 +0.8
3,022,376 - ECD_02883 0.71 +0.4
3,022,390 + ECD_02883 0.72 -1.1
3,022,444 - ECD_02883 0.78 +1.0
3,022,766 + +0.2
3,022,766 + -0.3
3,022,767 - +0.0
3,022,887 - -0.7
3,022,887 - -1.5
3,022,897 + -0.5
3,022,898 - +0.6
3,022,983 + ECD_02884 0.16 -2.6
3,023,119 + ECD_02884 0.28 -0.7
3,023,173 - ECD_02884 0.33 -2.2
3,023,254 - ECD_02884 0.40 -1.0
3,023,326 + ECD_02884 0.46 -0.1
3,023,326 + ECD_02884 0.46 -1.4
3,023,327 - ECD_02884 0.46 -0.8
3,023,328 + ECD_02884 0.46 -0.2
3,023,328 + ECD_02884 0.46 -0.6
3,023,329 - ECD_02884 0.46 +2.4
3,023,332 + ECD_02884 0.46 -0.7
3,023,332 + ECD_02884 0.46 -0.1
3,023,333 - ECD_02884 0.46 -1.0
3,023,333 - ECD_02884 0.46 -1.4
3,023,381 + ECD_02884 0.51 -0.6
3,023,382 - ECD_02884 0.51 -0.2
3,023,398 + ECD_02884 0.52 -0.4
3,023,398 + ECD_02884 0.52 +0.1
3,023,398 + ECD_02884 0.52 +0.9
3,023,398 + ECD_02884 0.52 -1.0
3,023,399 - ECD_02884 0.52 -0.7
3,023,404 - ECD_02884 0.53 +0.9
3,023,404 - ECD_02884 0.53 +0.2
3,023,462 + ECD_02884 0.58 +0.5
3,023,503 + ECD_02884 0.61 -0.6
3,023,504 - ECD_02884 0.61 -0.6
3,023,592 + ECD_02884 0.69 -1.0
3,023,592 + ECD_02884 0.69 -2.0

Or see this region's nucleotide sequence