Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02778 and ECD_02779 overlap by 1 nucleotides ECD_02779 and ECD_02780 are separated by 183 nucleotides ECD_02780 and ECD_02781 are separated by 17 nucleotides ECD_02781 and ECD_02782 are separated by 17 nucleotides
ECD_02778: ECD_02778 - uncharacterized protein, at 2,923,795 to 2,924,358
_02778
ECD_02779: ECD_02779 - putative Holliday junction resolvase, at 2,924,358 to 2,924,774
_02779
ECD_02780: ECD_02780 - putative PilT family AAA+ ATPase, at 2,924,958 to 2,925,938
_02780
ECD_02781: ECD_02781 - UPF0001 family protein, PLP-binding, at 2,925,956 to 2,926,660
_02781
ECD_02782: ECD_02782 - putative inner membrane protein; compensates for loss in K+ uptake, at 2,926,678 to 2,927,244
_02782
Position (kb)
2924
2925
2926 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2924.165 kb on + strand, within ECD_02778 at 2924.259 kb on + strand, within ECD_02778 at 2924.371 kb on + strand at 2924.772 kb on + strand at 2924.772 kb on + strand at 2924.773 kb on - strand at 2924.800 kb on + strand at 2924.804 kb on + strand at 2924.804 kb on + strand at 2924.804 kb on + strand at 2924.805 kb on - strand at 2924.805 kb on - strand at 2924.807 kb on + strand at 2924.873 kb on + strand at 2924.873 kb on + strand at 2924.874 kb on - strand at 2924.882 kb on + strand at 2924.911 kb on + strand at 2924.911 kb on + strand at 2924.911 kb on + strand at 2924.912 kb on - strand at 2924.923 kb on - strand at 2924.923 kb on - strand at 2924.931 kb on + strand at 2924.931 kb on + strand at 2924.990 kb on - strand at 2925.033 kb on - strand at 2925.260 kb on + strand, within ECD_02780 at 2925.261 kb on - strand, within ECD_02780 at 2925.264 kb on + strand, within ECD_02780 at 2925.401 kb on + strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.451 kb on + strand, within ECD_02780 at 2925.458 kb on - strand, within ECD_02780 at 2925.458 kb on - strand, within ECD_02780 at 2925.511 kb on + strand, within ECD_02780 at 2925.651 kb on + strand, within ECD_02780 at 2925.762 kb on + strand, within ECD_02780 at 2925.798 kb on + strand, within ECD_02780 at 2925.798 kb on + strand, within ECD_02780 at 2925.885 kb on + strand at 2925.886 kb on - strand at 2925.899 kb on + strand at 2925.899 kb on + strand at 2925.900 kb on - strand at 2925.907 kb on - strand at 2925.912 kb on - strand at 2925.933 kb on - strand at 2925.933 kb on - strand at 2925.933 kb on - strand at 2925.938 kb on + strand at 2925.939 kb on - strand at 2925.942 kb on - strand at 2926.148 kb on - strand, within ECD_02781 at 2926.186 kb on - strand, within ECD_02781 at 2926.217 kb on - strand, within ECD_02781 at 2926.219 kb on + strand, within ECD_02781 at 2926.258 kb on + strand, within ECD_02781 at 2926.258 kb on + strand, within ECD_02781 at 2926.363 kb on + strand, within ECD_02781 at 2926.419 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.473 kb on - strand, within ECD_02781 at 2926.473 kb on - strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.477 kb on - strand, within ECD_02781 at 2926.509 kb on + strand, within ECD_02781 at 2926.600 kb on + strand at 2926.722 kb on + strand at 2926.885 kb on + strand, within ECD_02782
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,924,165 + ECD_02778 0.66 -0.9 2,924,259 + ECD_02778 0.82 +0.3 2,924,371 + -0.4 2,924,772 + -0.8 2,924,772 + -0.4 2,924,773 - -0.7 2,924,800 + -1.1 2,924,804 + -1.0 2,924,804 + -0.1 2,924,804 + -1.0 2,924,805 - -0.3 2,924,805 - +0.2 2,924,807 + -1.3 2,924,873 + -1.5 2,924,873 + +0.2 2,924,874 - +5.5 2,924,882 + +0.5 2,924,911 + +0.3 2,924,911 + -0.6 2,924,911 + -0.1 2,924,912 - -0.5 2,924,923 - -0.2 2,924,923 - -1.2 2,924,931 + -0.2 2,924,931 + +0.3 2,924,990 - -0.9 2,925,033 - -2.7 2,925,260 + ECD_02780 0.31 -0.3 2,925,261 - ECD_02780 0.31 +0.2 2,925,264 + ECD_02780 0.31 -1.2 2,925,401 + ECD_02780 0.45 -1.3 2,925,402 - ECD_02780 0.45 -1.1 2,925,402 - ECD_02780 0.45 -1.4 2,925,402 - ECD_02780 0.45 +0.2 2,925,451 + ECD_02780 0.50 -0.3 2,925,458 - ECD_02780 0.51 -0.6 2,925,458 - ECD_02780 0.51 -1.2 2,925,511 + ECD_02780 0.56 +0.2 2,925,651 + ECD_02780 0.71 -0.6 2,925,762 + ECD_02780 0.82 -0.8 2,925,798 + ECD_02780 0.86 -1.8 2,925,798 + ECD_02780 0.86 +1.2 2,925,885 + +0.4 2,925,886 - -1.1 2,925,899 + -0.7 2,925,899 + -2.5 2,925,900 - +0.2 2,925,907 - +0.6 2,925,912 - +1.5 2,925,933 - +0.0 2,925,933 - -0.1 2,925,933 - +0.4 2,925,938 + -0.5 2,925,939 - -1.7 2,925,942 - -1.5 2,926,148 - ECD_02781 0.27 -0.4 2,926,186 - ECD_02781 0.33 +0.4 2,926,217 - ECD_02781 0.37 -1.1 2,926,219 + ECD_02781 0.37 -1.4 2,926,258 + ECD_02781 0.43 +1.5 2,926,258 + ECD_02781 0.43 +0.6 2,926,363 + ECD_02781 0.58 -0.6 2,926,419 + ECD_02781 0.66 +0.2 2,926,472 + ECD_02781 0.73 +0.3 2,926,472 + ECD_02781 0.73 +1.0 2,926,472 + ECD_02781 0.73 -0.8 2,926,473 - ECD_02781 0.73 -0.2 2,926,473 - ECD_02781 0.73 -1.9 2,926,476 + ECD_02781 0.74 +0.1 2,926,476 + ECD_02781 0.74 +1.2 2,926,476 + ECD_02781 0.74 -0.6 2,926,476 + ECD_02781 0.74 +0.8 2,926,476 + ECD_02781 0.74 -0.1 2,926,476 + ECD_02781 0.74 -0.2 2,926,477 - ECD_02781 0.74 -0.1 2,926,509 + ECD_02781 0.78 -0.5 2,926,600 + +0.6 2,926,722 + +1.0 2,926,885 + ECD_02782 0.37 -0.7
Or see this region's nucleotide sequence