Strain Fitness in Escherichia coli BL21 around ECD_02689

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02687 and ECD_02688 overlap by 14 nucleotidesECD_02688 and ECD_02689 are separated by 128 nucleotidesECD_02689 and ECD_04282 are separated by 559 nucleotides ECD_02687: ECD_02687 - transcriptional activator of lysA; autorepressor, at 2,817,303 to 2,818,238 _02687 ECD_02688: ECD_02688 - Asp/Glu_racemase family protein, at 2,818,225 to 2,818,917 _02688 ECD_02689: ECD_02689 - arabinose transporter, at 2,819,046 to 2,820,464 _02689 ECD_04282: ECD_04282 - IS150 hypothetical protein, at 2,821,024 to 2,821,545 _04282 Position (kb) 2819 2820 2821Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2818.048 kb on + strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.089 kb on - strand, within ECD_02687at 2818.089 kb on - strand, within ECD_02687at 2818.160 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.172 kb on - strandat 2818.172 kb on - strandat 2818.172 kb on - strandat 2818.211 kb on + strandat 2818.211 kb on + strandat 2818.212 kb on - strandat 2818.226 kb on + strandat 2818.236 kb on + strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.386 kb on - strand, within ECD_02688at 2818.389 kb on - strand, within ECD_02688at 2818.408 kb on - strand, within ECD_02688at 2818.477 kb on - strand, within ECD_02688at 2818.538 kb on + strand, within ECD_02688at 2818.539 kb on - strand, within ECD_02688at 2818.539 kb on - strand, within ECD_02688at 2818.612 kb on + strand, within ECD_02688at 2818.613 kb on - strand, within ECD_02688at 2818.656 kb on + strand, within ECD_02688at 2818.657 kb on - strand, within ECD_02688at 2818.657 kb on - strand, within ECD_02688at 2818.666 kb on - strand, within ECD_02688at 2818.671 kb on + strand, within ECD_02688at 2818.672 kb on - strand, within ECD_02688at 2818.675 kb on + strand, within ECD_02688at 2818.675 kb on + strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.683 kb on + strand, within ECD_02688at 2818.683 kb on + strand, within ECD_02688at 2818.684 kb on - strand, within ECD_02688at 2818.684 kb on - strand, within ECD_02688at 2818.705 kb on + strand, within ECD_02688at 2818.743 kb on + strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.794 kb on + strand, within ECD_02688at 2818.794 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.799 kb on - strand, within ECD_02688at 2818.840 kb on - strand, within ECD_02688at 2818.853 kb on - strandat 2818.853 kb on - strandat 2818.853 kb on - strandat 2818.862 kb on + strandat 2818.862 kb on + strandat 2818.865 kb on + strandat 2818.999 kb on + strandat 2819.000 kb on - strandat 2819.000 kb on - strandat 2819.023 kb on + strandat 2819.023 kb on + strandat 2819.023 kb on + strandat 2819.024 kb on - strandat 2819.024 kb on - strandat 2819.024 kb on - strandat 2819.096 kb on + strandat 2819.097 kb on - strandat 2819.097 kb on - strandat 2819.173 kb on + strandat 2819.240 kb on + strand, within ECD_02689at 2819.273 kb on + strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.277 kb on - strand, within ECD_02689at 2819.360 kb on + strand, within ECD_02689at 2819.360 kb on + strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.438 kb on - strand, within ECD_02689at 2819.438 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.543 kb on + strand, within ECD_02689at 2819.626 kb on + strand, within ECD_02689at 2819.629 kb on + strand, within ECD_02689at 2819.629 kb on + strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.706 kb on - strand, within ECD_02689at 2819.718 kb on - strand, within ECD_02689at 2819.807 kb on + strand, within ECD_02689at 2819.807 kb on + strand, within ECD_02689at 2819.808 kb on - strand, within ECD_02689at 2819.808 kb on - strand, within ECD_02689at 2819.808 kb on - strand, within ECD_02689at 2819.815 kb on - strand, within ECD_02689at 2819.831 kb on + strand, within ECD_02689at 2819.832 kb on - strand, within ECD_02689at 2819.945 kb on + strand, within ECD_02689at 2819.947 kb on + strand, within ECD_02689at 2819.947 kb on + strand, within ECD_02689at 2819.947 kb on + strand, within ECD_02689at 2819.947 kb on + strand, within ECD_02689at 2819.948 kb on - strand, within ECD_02689at 2820.008 kb on - strand, within ECD_02689at 2820.008 kb on - strand, within ECD_02689at 2820.011 kb on + strand, within ECD_02689at 2820.011 kb on + strand, within ECD_02689at 2820.012 kb on - strand, within ECD_02689at 2820.012 kb on - strand, within ECD_02689at 2820.012 kb on - strand, within ECD_02689at 2820.059 kb on - strand, within ECD_02689at 2820.120 kb on + strand, within ECD_02689at 2820.120 kb on + strand, within ECD_02689at 2820.154 kb on - strand, within ECD_02689at 2820.154 kb on - strand, within ECD_02689at 2820.155 kb on + strand, within ECD_02689at 2820.156 kb on - strand, within ECD_02689at 2820.165 kb on + strand, within ECD_02689at 2820.166 kb on - strand, within ECD_02689at 2820.197 kb on - strand, within ECD_02689at 2820.197 kb on - strand, within ECD_02689at 2820.201 kb on - strand, within ECD_02689at 2820.230 kb on + strand, within ECD_02689at 2820.230 kb on + strand, within ECD_02689at 2820.266 kb on + strand, within ECD_02689at 2820.266 kb on + strand, within ECD_02689at 2820.269 kb on + strand, within ECD_02689at 2820.270 kb on - strand, within ECD_02689at 2820.361 kb on - strandat 2820.361 kb on - strandat 2820.398 kb on + strandat 2820.398 kb on + strandat 2820.399 kb on - strandat 2820.399 kb on - strandat 2820.399 kb on - strandat 2820.399 kb on - strandat 2820.404 kb on + strandat 2820.404 kb on + strandat 2820.405 kb on - strandat 2820.455 kb on + strandat 2820.456 kb on - strandat 2820.456 kb on - strandat 2820.458 kb on + strandat 2820.459 kb on - strandat 2820.486 kb on - strandat 2820.681 kb on + strandat 2820.761 kb on - strandat 2820.814 kb on + strandat 2820.814 kb on + strandat 2820.815 kb on - strandat 2820.815 kb on - strandat 2820.815 kb on - strandat 2820.815 kb on - strandat 2820.815 kb on - strandat 2820.815 kb on - strandat 2820.828 kb on + strandat 2820.829 kb on - strandat 2820.926 kb on - strandat 2820.955 kb on + strandat 2820.956 kb on - strandat 2820.973 kb on - strandat 2821.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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2,818,048 + ECD_02687 0.80 -1.1
2,818,054 - ECD_02687 0.80 -0.3
2,818,054 - ECD_02687 0.80 +0.4
2,818,054 - ECD_02687 0.80 +0.3
2,818,089 - ECD_02687 0.84 -3.0
2,818,089 - ECD_02687 0.84 -1.0
2,818,160 + -0.3
2,818,171 + -0.0
2,818,171 + -0.4
2,818,171 + +0.8
2,818,171 + +1.0
2,818,172 - -0.1
2,818,172 - +1.3
2,818,172 - -1.0
2,818,211 + +0.1
2,818,211 + -0.2
2,818,212 - +0.3
2,818,226 + +0.4
2,818,236 + +0.2
2,818,237 - -0.6
2,818,237 - -1.0
2,818,237 - -1.7
2,818,237 - -0.5
2,818,237 - +0.4
2,818,386 - ECD_02688 0.23 -1.1
2,818,389 - ECD_02688 0.24 +0.2
2,818,408 - ECD_02688 0.26 +0.3
2,818,477 - ECD_02688 0.36 -0.8
2,818,538 + ECD_02688 0.45 -0.9
2,818,539 - ECD_02688 0.45 -0.9
2,818,539 - ECD_02688 0.45 -0.3
2,818,612 + ECD_02688 0.56 -1.3
2,818,613 - ECD_02688 0.56 -0.2
2,818,656 + ECD_02688 0.62 -0.2
2,818,657 - ECD_02688 0.62 -0.2
2,818,657 - ECD_02688 0.62 -1.6
2,818,666 - ECD_02688 0.64 -1.6
2,818,671 + ECD_02688 0.64 -0.3
2,818,672 - ECD_02688 0.65 -0.1
2,818,675 + ECD_02688 0.65 +0.1
2,818,675 + ECD_02688 0.65 -2.0
2,818,676 - ECD_02688 0.65 -1.0
2,818,676 - ECD_02688 0.65 -1.3
2,818,676 - ECD_02688 0.65 -0.1
2,818,676 - ECD_02688 0.65 -1.0
2,818,676 - ECD_02688 0.65 +0.4
2,818,676 - ECD_02688 0.65 -1.3
2,818,683 + ECD_02688 0.66 -0.8
2,818,683 + ECD_02688 0.66 +0.2
2,818,684 - ECD_02688 0.66 -0.4
2,818,684 - ECD_02688 0.66 +0.3
2,818,705 + ECD_02688 0.69 -1.2
2,818,743 + ECD_02688 0.75 +1.3
2,818,775 - ECD_02688 0.79 -0.1
2,818,775 - ECD_02688 0.79 +0.6
2,818,775 - ECD_02688 0.79 +0.8
2,818,775 - ECD_02688 0.79 -0.3
2,818,775 - ECD_02688 0.79 -0.4
2,818,794 + ECD_02688 0.82 +0.9
2,818,794 + ECD_02688 0.82 +0.5
2,818,798 + ECD_02688 0.83 -1.4
2,818,798 + ECD_02688 0.83 -0.0
2,818,798 + ECD_02688 0.83 +0.4
2,818,798 + ECD_02688 0.83 -0.4
2,818,799 - ECD_02688 0.83 +0.4
2,818,840 - ECD_02688 0.89 -1.1
2,818,853 - +0.6
2,818,853 - -1.2
2,818,853 - -0.6
2,818,862 + +0.3
2,818,862 + -0.9
2,818,865 + +0.1
2,818,999 + -0.8
2,819,000 - +0.6
2,819,000 - -0.0
2,819,023 + -0.2
2,819,023 + -1.6
2,819,023 + +0.7
2,819,024 - -1.1
2,819,024 - -0.6
2,819,024 - +1.0
2,819,096 + -0.8
2,819,097 - -0.4
2,819,097 - +0.8
2,819,173 + +0.2
2,819,240 + ECD_02689 0.14 -0.1
2,819,273 + ECD_02689 0.16 -0.5
2,819,274 - ECD_02689 0.16 -1.1
2,819,274 - ECD_02689 0.16 -0.6
2,819,274 - ECD_02689 0.16 -1.8
2,819,274 - ECD_02689 0.16 +1.0
2,819,274 - ECD_02689 0.16 -0.0
2,819,274 - ECD_02689 0.16 +0.3
2,819,274 - ECD_02689 0.16 +0.4
2,819,274 - ECD_02689 0.16 +0.2
2,819,274 - ECD_02689 0.16 -1.2
2,819,274 - ECD_02689 0.16 +0.5
2,819,277 - ECD_02689 0.16 -2.4
2,819,360 + ECD_02689 0.22 +2.3
2,819,360 + ECD_02689 0.22 +0.2
2,819,361 - ECD_02689 0.22 +0.1
2,819,361 - ECD_02689 0.22 +2.0
2,819,361 - ECD_02689 0.22 +0.2
2,819,361 - ECD_02689 0.22 -0.7
2,819,438 - ECD_02689 0.28 -0.1
2,819,438 - ECD_02689 0.28 -0.7
2,819,508 - ECD_02689 0.33 -2.8
2,819,508 - ECD_02689 0.33 +0.3
2,819,508 - ECD_02689 0.33 +0.9
2,819,508 - ECD_02689 0.33 +0.3
2,819,508 - ECD_02689 0.33 +1.0
2,819,543 + ECD_02689 0.35 -0.4
2,819,626 + ECD_02689 0.41 -0.2
2,819,629 + ECD_02689 0.41 +0.6
2,819,629 + ECD_02689 0.41 +0.7
2,819,630 - ECD_02689 0.41 +1.1
2,819,630 - ECD_02689 0.41 -0.3
2,819,630 - ECD_02689 0.41 -0.1
2,819,630 - ECD_02689 0.41 +1.0
2,819,630 - ECD_02689 0.41 -0.9
2,819,706 - ECD_02689 0.47 -0.2
2,819,718 - ECD_02689 0.47 +1.3
2,819,807 + ECD_02689 0.54 +0.3
2,819,807 + ECD_02689 0.54 +0.5
2,819,808 - ECD_02689 0.54 -0.3
2,819,808 - ECD_02689 0.54 -1.5
2,819,808 - ECD_02689 0.54 -0.5
2,819,815 - ECD_02689 0.54 -1.0
2,819,831 + ECD_02689 0.55 +0.2
2,819,832 - ECD_02689 0.55 +0.0
2,819,945 + ECD_02689 0.63 -1.5
2,819,947 + ECD_02689 0.63 +1.0
2,819,947 + ECD_02689 0.63 -0.1
2,819,947 + ECD_02689 0.63 +0.2
2,819,947 + ECD_02689 0.63 -1.6
2,819,948 - ECD_02689 0.64 +0.6
2,820,008 - ECD_02689 0.68 -0.5
2,820,008 - ECD_02689 0.68 -0.2
2,820,011 + ECD_02689 0.68 -0.1
2,820,011 + ECD_02689 0.68 +1.3
2,820,012 - ECD_02689 0.68 -1.9
2,820,012 - ECD_02689 0.68 -0.2
2,820,012 - ECD_02689 0.68 -0.3
2,820,059 - ECD_02689 0.71 -1.1
2,820,120 + ECD_02689 0.76 +0.1
2,820,120 + ECD_02689 0.76 +0.2
2,820,154 - ECD_02689 0.78 -0.1
2,820,154 - ECD_02689 0.78 -0.4
2,820,155 + ECD_02689 0.78 +0.3
2,820,156 - ECD_02689 0.78 +0.8
2,820,165 + ECD_02689 0.79 -0.6
2,820,166 - ECD_02689 0.79 -1.4
2,820,197 - ECD_02689 0.81 -1.1
2,820,197 - ECD_02689 0.81 +0.1
2,820,201 - ECD_02689 0.81 -1.0
2,820,230 + ECD_02689 0.83 +0.1
2,820,230 + ECD_02689 0.83 -1.2
2,820,266 + ECD_02689 0.86 -0.9
2,820,266 + ECD_02689 0.86 +3.0
2,820,269 + ECD_02689 0.86 +0.1
2,820,270 - ECD_02689 0.86 +0.6
2,820,361 - -0.2
2,820,361 - -0.8
2,820,398 + -0.1
2,820,398 + -0.2
2,820,399 - +0.2
2,820,399 - -0.9
2,820,399 - -1.4
2,820,399 - -0.9
2,820,404 + -0.3
2,820,404 + +0.4
2,820,405 - -0.4
2,820,455 + +0.3
2,820,456 - -0.8
2,820,456 - -1.7
2,820,458 + +1.4
2,820,459 - -1.1
2,820,486 - +0.4
2,820,681 + +0.3
2,820,761 - -0.2
2,820,814 + +0.3
2,820,814 + +0.6
2,820,815 - +0.2
2,820,815 - -1.4
2,820,815 - -1.6
2,820,815 - +0.2
2,820,815 - +1.0
2,820,815 - +0.6
2,820,828 + +0.2
2,820,829 - -0.6
2,820,926 - +0.7
2,820,955 + +2.0
2,820,956 - +0.7
2,820,973 - +0.7
2,821,014 - -0.7

Or see this region's nucleotide sequence