Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02611 and ECD_02612 overlap by 10 nucleotides ECD_02612 and ECD_02613 are separated by 16 nucleotides ECD_02613 and ECD_02614 are separated by 147 nucleotides ECD_02614 and ECD_02615 overlap by 4 nucleotides ECD_02615 and ECD_02616 overlap by 23 nucleotides
ECD_02611: ECD_02611 - putative oxidoreductase, at 2,724,818 to 2,726,089
_02611
ECD_02612: ECD_02612 - putative 4Fe-4S cluster-containing protein, at 2,726,080 to 2,726,340
_02612
ECD_02613: ECD_02613 - putative antiterminator regulatory protein, at 2,726,357 to 2,726,932
_02613
ECD_02614: ECD_02614 - putative flavoprotein, at 2,727,080 to 2,727,940
_02614
ECD_02615: ECD_02615 - putative flavoprotein, at 2,727,937 to 2,728,716
_02615
ECD_02616: ECD_02616 - putative MFS sugar transporter; membrane protein, at 2,728,694 to 2,730,031
_02616
Position (kb)
2727
2728 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2726.087 kb on + strand at 2726.214 kb on + strand, within ECD_02612 at 2726.214 kb on + strand, within ECD_02612 at 2726.214 kb on + strand, within ECD_02612 at 2726.214 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.219 kb on + strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.220 kb on - strand, within ECD_02612 at 2726.223 kb on + strand, within ECD_02612 at 2726.223 kb on + strand, within ECD_02612 at 2726.223 kb on + strand, within ECD_02612 at 2726.223 kb on + strand, within ECD_02612 at 2726.223 kb on + strand, within ECD_02612 at 2726.224 kb on - strand, within ECD_02612 at 2726.224 kb on - strand, within ECD_02612 at 2726.224 kb on - strand, within ECD_02612 at 2726.224 kb on - strand, within ECD_02612 at 2726.224 kb on - strand, within ECD_02612 at 2726.231 kb on - strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.285 kb on + strand, within ECD_02612 at 2726.286 kb on - strand, within ECD_02612 at 2726.286 kb on - strand, within ECD_02612 at 2726.286 kb on - strand, within ECD_02612 at 2726.286 kb on - strand, within ECD_02612 at 2726.286 kb on - strand, within ECD_02612 at 2726.286 kb on - strand, within ECD_02612 at 2726.326 kb on + strand at 2726.327 kb on - strand at 2726.342 kb on + strand at 2726.342 kb on + strand at 2726.342 kb on + strand at 2726.342 kb on + strand at 2726.343 kb on - strand at 2726.343 kb on - strand at 2726.343 kb on - strand at 2726.343 kb on - strand at 2726.343 kb on - strand at 2726.343 kb on - strand at 2726.343 kb on - strand at 2726.351 kb on + strand at 2726.352 kb on - strand at 2726.352 kb on - strand at 2726.356 kb on + strand at 2726.367 kb on + strand at 2726.367 kb on + strand at 2726.368 kb on - strand at 2726.411 kb on - strand at 2726.453 kb on - strand, within ECD_02613 at 2726.453 kb on - strand, within ECD_02613 at 2726.453 kb on - strand, within ECD_02613 at 2726.489 kb on - strand, within ECD_02613 at 2726.489 kb on - strand, within ECD_02613 at 2726.489 kb on - strand, within ECD_02613 at 2726.489 kb on - strand, within ECD_02613 at 2726.498 kb on - strand, within ECD_02613 at 2726.506 kb on + strand, within ECD_02613 at 2726.506 kb on + strand, within ECD_02613 at 2726.563 kb on + strand, within ECD_02613 at 2726.563 kb on + strand, within ECD_02613 at 2726.563 kb on + strand, within ECD_02613 at 2726.563 kb on + strand, within ECD_02613 at 2726.668 kb on + strand, within ECD_02613 at 2726.669 kb on - strand, within ECD_02613 at 2726.746 kb on + strand, within ECD_02613 at 2726.768 kb on - strand, within ECD_02613 at 2726.855 kb on - strand, within ECD_02613 at 2727.025 kb on - strand at 2727.034 kb on - strand at 2727.056 kb on + strand at 2727.057 kb on - strand at 2727.082 kb on - strand at 2727.212 kb on - strand, within ECD_02614 at 2727.212 kb on - strand, within ECD_02614 at 2727.262 kb on + strand, within ECD_02614 at 2727.262 kb on + strand, within ECD_02614 at 2727.262 kb on + strand, within ECD_02614 at 2727.262 kb on + strand, within ECD_02614 at 2727.262 kb on + strand, within ECD_02614 at 2727.262 kb on + strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.263 kb on - strand, within ECD_02614 at 2727.348 kb on + strand, within ECD_02614 at 2727.349 kb on - strand, within ECD_02614 at 2727.349 kb on - strand, within ECD_02614 at 2727.383 kb on - strand, within ECD_02614 at 2727.398 kb on - strand, within ECD_02614 at 2727.657 kb on - strand, within ECD_02614 at 2727.667 kb on + strand, within ECD_02614 at 2727.668 kb on - strand, within ECD_02614 at 2727.668 kb on - strand, within ECD_02614 at 2727.668 kb on - strand, within ECD_02614 at 2727.668 kb on - strand, within ECD_02614 at 2727.671 kb on + strand, within ECD_02614 at 2727.671 kb on + strand, within ECD_02614 at 2727.672 kb on - strand, within ECD_02614 at 2727.704 kb on + strand, within ECD_02614 at 2727.704 kb on + strand, within ECD_02614 at 2727.704 kb on + strand, within ECD_02614 at 2727.704 kb on + strand, within ECD_02614 at 2727.705 kb on - strand, within ECD_02614 at 2727.705 kb on - strand, within ECD_02614 at 2727.705 kb on - strand, within ECD_02614 at 2727.705 kb on - strand, within ECD_02614 at 2727.705 kb on - strand, within ECD_02614 at 2727.825 kb on - strand, within ECD_02614 at 2727.859 kb on + strand at 2727.859 kb on + strand at 2727.860 kb on - strand at 2727.896 kb on + strand at 2727.897 kb on - strand at 2727.897 kb on - strand at 2727.897 kb on - strand at 2727.918 kb on - strand at 2727.918 kb on - strand at 2727.918 kb on - strand at 2727.918 kb on - strand at 2727.918 kb on - strand at 2727.935 kb on - strand at 2727.959 kb on - strand at 2727.959 kb on - strand at 2727.962 kb on + strand at 2727.962 kb on + strand at 2727.963 kb on - strand at 2727.963 kb on - strand at 2727.963 kb on - strand at 2727.963 kb on - strand at 2727.963 kb on - strand at 2727.974 kb on - strand at 2727.974 kb on - strand at 2728.221 kb on + strand, within ECD_02615 at 2728.222 kb on - strand, within ECD_02615 at 2728.222 kb on - strand, within ECD_02615 at 2728.354 kb on - strand, within ECD_02615 at 2728.358 kb on - strand, within ECD_02615 at 2728.358 kb on - strand, within ECD_02615 at 2728.358 kb on - strand, within ECD_02615 at 2728.396 kb on - strand, within ECD_02615 at 2728.451 kb on - strand, within ECD_02615 at 2728.451 kb on - strand, within ECD_02615 at 2728.542 kb on + strand, within ECD_02615 at 2728.621 kb on - strand, within ECD_02615 at 2728.696 kb on - strand at 2728.727 kb on + strand at 2728.727 kb on + strand at 2728.728 kb on - strand at 2728.728 kb on - strand at 2728.760 kb on - strand at 2728.760 kb on - strand at 2728.823 kb on + strand at 2728.823 kb on + strand at 2728.873 kb on + strand, within ECD_02616 at 2728.873 kb on + strand, within ECD_02616 at 2728.874 kb on - strand, within ECD_02616
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 2,726,087 + +1.0 2,726,214 + ECD_02612 0.51 +0.8 2,726,214 + ECD_02612 0.51 -1.0 2,726,214 + ECD_02612 0.51 -0.2 2,726,214 + ECD_02612 0.51 +1.8 2,726,219 + ECD_02612 0.53 +0.0 2,726,219 + ECD_02612 0.53 +0.4 2,726,219 + ECD_02612 0.53 -0.3 2,726,219 + ECD_02612 0.53 +0.7 2,726,219 + ECD_02612 0.53 +0.9 2,726,219 + ECD_02612 0.53 -0.9 2,726,219 + ECD_02612 0.53 +1.1 2,726,219 + ECD_02612 0.53 +0.1 2,726,219 + ECD_02612 0.53 +0.7 2,726,219 + ECD_02612 0.53 +1.3 2,726,219 + ECD_02612 0.53 +0.9 2,726,220 - ECD_02612 0.54 +0.3 2,726,220 - ECD_02612 0.54 +0.1 2,726,220 - ECD_02612 0.54 -0.6 2,726,220 - ECD_02612 0.54 +0.2 2,726,220 - ECD_02612 0.54 +0.3 2,726,220 - ECD_02612 0.54 +0.7 2,726,220 - ECD_02612 0.54 -2.0 2,726,220 - ECD_02612 0.54 +0.4 2,726,220 - ECD_02612 0.54 +1.1 2,726,220 - ECD_02612 0.54 +0.2 2,726,223 + ECD_02612 0.55 +1.0 2,726,223 + ECD_02612 0.55 +0.8 2,726,223 + ECD_02612 0.55 -1.4 2,726,223 + ECD_02612 0.55 -0.1 2,726,223 + ECD_02612 0.55 +1.9 2,726,224 - ECD_02612 0.55 -0.8 2,726,224 - ECD_02612 0.55 +0.8 2,726,224 - ECD_02612 0.55 +0.4 2,726,224 - ECD_02612 0.55 +0.4 2,726,224 - ECD_02612 0.55 +2.9 2,726,231 - ECD_02612 0.58 +1.7 2,726,285 + ECD_02612 0.79 -0.6 2,726,285 + ECD_02612 0.79 -1.5 2,726,285 + ECD_02612 0.79 -0.2 2,726,285 + ECD_02612 0.79 +0.1 2,726,285 + ECD_02612 0.79 -0.9 2,726,285 + ECD_02612 0.79 -0.7 2,726,285 + ECD_02612 0.79 -0.2 2,726,286 - ECD_02612 0.79 -1.4 2,726,286 - ECD_02612 0.79 +0.2 2,726,286 - ECD_02612 0.79 +0.2 2,726,286 - ECD_02612 0.79 -1.3 2,726,286 - ECD_02612 0.79 +0.9 2,726,286 - ECD_02612 0.79 -0.4 2,726,326 + -0.9 2,726,327 - +0.6 2,726,342 + -1.0 2,726,342 + -0.4 2,726,342 + -0.6 2,726,342 + -0.5 2,726,343 - +0.5 2,726,343 - -0.3 2,726,343 - -1.6 2,726,343 - +0.9 2,726,343 - -1.4 2,726,343 - +0.1 2,726,343 - +0.5 2,726,351 + -0.5 2,726,352 - +0.3 2,726,352 - -1.6 2,726,356 + -0.7 2,726,367 + -2.1 2,726,367 + +0.0 2,726,368 - -1.2 2,726,411 - +1.0 2,726,453 - ECD_02613 0.17 +0.6 2,726,453 - ECD_02613 0.17 +0.9 2,726,453 - ECD_02613 0.17 -0.1 2,726,489 - ECD_02613 0.23 +0.7 2,726,489 - ECD_02613 0.23 +0.9 2,726,489 - ECD_02613 0.23 -1.2 2,726,489 - ECD_02613 0.23 -0.1 2,726,498 - ECD_02613 0.24 -1.5 2,726,506 + ECD_02613 0.26 -2.5 2,726,506 + ECD_02613 0.26 -0.4 2,726,563 + ECD_02613 0.36 -0.1 2,726,563 + ECD_02613 0.36 -0.8 2,726,563 + ECD_02613 0.36 +0.1 2,726,563 + ECD_02613 0.36 +0.3 2,726,668 + ECD_02613 0.54 +0.2 2,726,669 - ECD_02613 0.54 -1.8 2,726,746 + ECD_02613 0.68 -1.8 2,726,768 - ECD_02613 0.71 +0.8 2,726,855 - ECD_02613 0.86 -0.9 2,727,025 - +0.5 2,727,034 - +1.0 2,727,056 + -1.4 2,727,057 - +0.5 2,727,082 - +0.6 2,727,212 - ECD_02614 0.15 +0.5 2,727,212 - ECD_02614 0.15 +0.1 2,727,262 + ECD_02614 0.21 -0.9 2,727,262 + ECD_02614 0.21 +0.5 2,727,262 + ECD_02614 0.21 -0.1 2,727,262 + ECD_02614 0.21 -0.6 2,727,262 + ECD_02614 0.21 +0.5 2,727,262 + ECD_02614 0.21 +1.6 2,727,263 - ECD_02614 0.21 +0.5 2,727,263 - ECD_02614 0.21 -0.7 2,727,263 - ECD_02614 0.21 -0.1 2,727,263 - ECD_02614 0.21 +1.1 2,727,263 - ECD_02614 0.21 +0.6 2,727,263 - ECD_02614 0.21 +2.0 2,727,263 - ECD_02614 0.21 +0.4 2,727,348 + ECD_02614 0.31 +1.2 2,727,349 - ECD_02614 0.31 +1.3 2,727,349 - ECD_02614 0.31 +1.0 2,727,383 - ECD_02614 0.35 +1.1 2,727,398 - ECD_02614 0.37 +0.4 2,727,657 - ECD_02614 0.67 +1.0 2,727,667 + ECD_02614 0.68 +0.1 2,727,668 - ECD_02614 0.68 +0.7 2,727,668 - ECD_02614 0.68 -1.8 2,727,668 - ECD_02614 0.68 +0.7 2,727,668 - ECD_02614 0.68 +0.3 2,727,671 + ECD_02614 0.69 +1.3 2,727,671 + ECD_02614 0.69 +0.9 2,727,672 - ECD_02614 0.69 +0.7 2,727,704 + ECD_02614 0.72 -0.3 2,727,704 + ECD_02614 0.72 -0.5 2,727,704 + ECD_02614 0.72 -1.3 2,727,704 + ECD_02614 0.72 -0.2 2,727,705 - ECD_02614 0.73 +0.3 2,727,705 - ECD_02614 0.73 +2.3 2,727,705 - ECD_02614 0.73 +0.4 2,727,705 - ECD_02614 0.73 -1.7 2,727,705 - ECD_02614 0.73 +2.1 2,727,825 - ECD_02614 0.87 +1.4 2,727,859 + -2.9 2,727,859 + +0.2 2,727,860 - -0.4 2,727,896 + -1.7 2,727,897 - +0.9 2,727,897 - -0.9 2,727,897 - -0.9 2,727,918 - +0.3 2,727,918 - -0.2 2,727,918 - +1.1 2,727,918 - -0.5 2,727,918 - +0.0 2,727,935 - -1.4 2,727,959 - +1.2 2,727,959 - +0.6 2,727,962 + -1.6 2,727,962 + -0.3 2,727,963 - +0.3 2,727,963 - +0.3 2,727,963 - -2.1 2,727,963 - -1.0 2,727,963 - +0.1 2,727,974 - -0.1 2,727,974 - -0.4 2,728,221 + ECD_02615 0.36 -1.4 2,728,222 - ECD_02615 0.37 +2.0 2,728,222 - ECD_02615 0.37 +0.3 2,728,354 - ECD_02615 0.53 -0.3 2,728,358 - ECD_02615 0.54 -0.1 2,728,358 - ECD_02615 0.54 -0.1 2,728,358 - ECD_02615 0.54 +0.1 2,728,396 - ECD_02615 0.59 -1.0 2,728,451 - ECD_02615 0.66 -1.0 2,728,451 - ECD_02615 0.66 -1.3 2,728,542 + ECD_02615 0.78 +0.1 2,728,621 - ECD_02615 0.88 +1.7 2,728,696 - +0.6 2,728,727 + +1.5 2,728,727 + +1.0 2,728,728 - -0.3 2,728,728 - -0.1 2,728,760 - -2.1 2,728,760 - -1.2 2,728,823 + -0.7 2,728,823 + +1.3 2,728,873 + ECD_02616 0.13 -1.1 2,728,873 + ECD_02616 0.13 -2.4 2,728,874 - ECD_02616 0.13 +0.4
Or see this region's nucleotide sequence